Guide to the Human Genome
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Name: LOC100131539 Sequence: fasta or formatted (302aa) NCBI GI: 239755638
Description:

PREDICTED: similar to Putative zinc finger protein 705H

Not currently referenced in the text

Other entries for this name:
alt prot {300aa} PREDICTED: similar to Putative zinc finger protein 705H
alt prot {239aa} PREDICTED: similar to Putative zinc finger protein 705H
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         10           1
 C cysteine            5.0         15           1
 D aspartate           4.0         12           1
 E glutamate           7.0         21           2
 F phenylalanine       3.6         11           1
 G glycine             5.3         16           1
 H histidine           6.3         19           1
 I isoleucine          5.0         15           2
 K lysine              9.3         28           2
 L leucine             9.3         28           2
 M methionine          2.6          8           2
 N asparagine          3.3         10           1
 P proline             3.6         11           1
 Q glutamine           5.0         15           1
 R arginine            5.6         17           2
 S serine              9.3         28           2
 T threonine           6.6         20           1
 V valine              2.0          6           1
 W tryptophan          0.7          2           1
 X unknown             0.3          1           1
 Y tyrosine            3.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative zinc finger protein ... 
LOC100131539          0.985   PREDICTED: similar to Putative zinc finger protein ...
ZNF705A               0.921   zinc finger protein 705A 
ZNF705G               0.905   PREDICTED: zinc finger protein 705G-like 
ZNF705D               0.903   zinc finger protein 705D 
ZNF705G               0.903   PREDICTED: zinc finger protein 705G-like 
LOC100132396          0.893   PREDICTED: hypothetical protein LOC100132396 
LOC100131539          0.745   PREDICTED: similar to Putative zinc finger protein ...
ZNF705G               0.677   PREDICTED: zinc finger protein 705G-like 
ZNF596                0.414   zinc finger protein 596 
ZNF596                0.414   zinc finger protein 596 
ZNF596                0.414   zinc finger protein 596 
ZNF177                0.350   zinc finger protein 177 
ZNF558                0.346   zinc finger protein 558 
ZNF829                0.338   zinc finger protein 829 
ZNF557                0.332   zinc finger protein 557 isoform a 
ZNF557                0.332   zinc finger protein 557 isoform a 
ZNF557                0.332   zinc finger protein 557 isoform b 
ZNF25                 0.322   zinc finger protein 25 
ZNF317                0.322   zinc finger protein 317 
ZNF140                0.314   zinc finger protein 140 
ZNF420                0.312   zinc finger protein 420 
ZNF679                0.307   zinc finger protein 679 
ZNF566                0.305   zinc finger protein 566 isoform 2 
ZNF566                0.305   zinc finger protein 566 isoform 1 
ZNF566                0.305   zinc finger protein 566 isoform 1 
ZNF566                0.305   zinc finger protein 566 isoform 1 
ZFP30                 0.302   zinc finger protein 30 homolog 
ZNF709                0.302   zinc finger protein 709 isoform a 
ZNF30                 0.302   zinc finger protein 30 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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