Guide to the Human Genome
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Name: LOC100132396 Sequence: fasta or formatted (300aa) NCBI GI: 239743475
Description:

PREDICTED: hypothetical protein LOC100132396

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0          9           1
 C cysteine            5.3         16           1
 D aspartate           4.3         13           1
 E glutamate           6.7         20           2
 F phenylalanine       3.7         11           1
 G glycine             5.7         17           1
 H histidine           5.7         17           1
 I isoleucine          5.0         15           2
 K lysine              9.7         29           3
 L leucine             9.0         27           2
 M methionine          3.0          9           2
 N asparagine          3.0          9           1
 P proline             3.3         10           2
 Q glutamine           5.0         15           1
 R arginine            6.0         18           2
 S serine              9.3         28           2
 T threonine           6.0         18           1
 V valine              2.0          6           1
 W tryptophan          1.0          3           2
 Y tyrosine            3.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100132396 
ZNF705D               0.982   zinc finger protein 705D 
ZNF705A               0.931   zinc finger protein 705A 
LOC100131539          0.910   PREDICTED: similar to Putative zinc finger protein ...
ZNF705G               0.903   PREDICTED: zinc finger protein 705G-like 
ZNF705G               0.902   PREDICTED: zinc finger protein 705G-like 
LOC100131539          0.892   PREDICTED: similar to Putative zinc finger protein ...
LOC100131539          0.670   PREDICTED: similar to Putative zinc finger protein ...
ZNF705G               0.666   PREDICTED: zinc finger protein 705G-like 
ZNF596                0.428   zinc finger protein 596 
ZNF596                0.428   zinc finger protein 596 
ZNF596                0.428   zinc finger protein 596 
ZNF177                0.354   zinc finger protein 177 
ZNF558                0.343   zinc finger protein 558 
ZNF317                0.339   zinc finger protein 317 
ZNF829                0.339   zinc finger protein 829 
ZNF557                0.336   zinc finger protein 557 isoform a 
ZNF557                0.336   zinc finger protein 557 isoform a 
ZNF557                0.336   zinc finger protein 557 isoform b 
ZNF566                0.325   zinc finger protein 566 isoform 1 
ZNF566                0.325   zinc finger protein 566 isoform 1 
ZNF566                0.325   zinc finger protein 566 isoform 1 
ZNF184                0.323   zinc finger protein 184 
ZNF679                0.320   zinc finger protein 679 
ZNF708                0.320   zinc finger protein 708 
ZNF140                0.318   zinc finger protein 140 
ZNF566                0.316   zinc finger protein 566 isoform 2 
ZNF568                0.315   zinc finger protein 568 
ZFP30                 0.313   zinc finger protein 30 homolog 
ZNF30                 0.311   zinc finger protein 30 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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