Search of human proteins with 239755636

Search of human proteins with 239755636

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755636 PREDICTED: similar to hCG1640299 [Homo sapiens]
         (187 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755636 PREDICTED: similar to hCG1640299 [Homo sapiens]          384   e-107
gi|169203492 PREDICTED: similar to hCG1640299 [Homo sapiens]          190   5e-49
gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens]          190   5e-49
gi|190684675 X-ray repair cross complementing protein 1 [Homo sa...    45   3e-05
gi|110349719 titin isoform N2-A [Homo sapiens]                         29   2.1  
gi|239755159 PREDICTED: similar to tubulin tyrosine ligase-like ...    29   2.1  
gi|212720861 tubulin tyrosine ligase-like family, member 11 a [H...    29   2.1  
gi|157168329 formin 1 [Homo sapiens]                                   29   2.7  
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          28   6.0  
gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]     28   6.0  
gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens]     28   6.0  
gi|116734676 GREB1 protein isoform c [Homo sapiens]                    27   7.9  
gi|23397644 GREB1 protein isoform b [Homo sapiens]                     27   7.9  
gi|23397642 GREB1 protein isoform a [Homo sapiens]                     27   7.9  
gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]              27   7.9  
gi|6912236 angiopoietin-like 2 precursor [Homo sapiens]                27   7.9  

>gi|239755636 PREDICTED: similar to hCG1640299 [Homo sapiens]
          Length = 187

 Score =  384 bits (987), Expect = e-107
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MGAFQNGQLSRRSLSLGSKERDVGTRNYVSQAALRLTRKFKFRSLHERVVQLLEAPERIP 60
           MGAFQNGQLSRRSLSLGSKERDVGTRNYVSQAALRLTRKFKFRSLHERVVQLLEAPERIP
Sbjct: 1   MGAFQNGQLSRRSLSLGSKERDVGTRNYVSQAALRLTRKFKFRSLHERVVQLLEAPERIP 60

Query: 61  VLRKTEEIPSNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVG 120
           VLRKTEEIPSNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVG
Sbjct: 61  VLRKTEEIPSNPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVG 120

Query: 121 HSSWPLDRPFITLLPATTLMSLTDSKQGKNRSGVRMFKDGKEGKSRKDGGGLYEKQRCST 180
           HSSWPLDRPFITLLPATTLMSLTDSKQGKNRSGVRMFKDGKEGKSRKDGGGLYEKQRCST
Sbjct: 121 HSSWPLDRPFITLLPATTLMSLTDSKQGKNRSGVRMFKDGKEGKSRKDGGGLYEKQRCST 180

Query: 181 KEDCECY 187
           KEDCECY
Sbjct: 181 KEDCECY 187


>gi|169203492 PREDICTED: similar to hCG1640299 [Homo sapiens]
          Length = 210

 Score =  190 bits (483), Expect = 5e-49
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 71  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 130
           NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF
Sbjct: 57  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 116

Query: 131 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 159
           ITLLPATTLMSLTDSKQGKNRSGVRMFKD
Sbjct: 117 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 145


>gi|169202280 PREDICTED: similar to hCG1640299 [Homo sapiens]
          Length = 210

 Score =  190 bits (483), Expect = 5e-49
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 71  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 130
           NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF
Sbjct: 57  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPF 116

Query: 131 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 159
           ITLLPATTLMSLTDSKQGKNRSGVRMFKD
Sbjct: 117 ITLLPATTLMSLTDSKQGKNRSGVRMFKD 145


>gi|190684675 X-ray repair cross complementing protein 1 [Homo
           sapiens]
          Length = 633

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 86  KSGQ--LKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPL-DRPFITLLPATTLMSL 142
           K+G+  + V LQLE+      +D+GN G AF+++ VG S+    ++ +  LL  ++ MS 
Sbjct: 37  KAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSP 96

Query: 143 TDSKQGKNRSGVRMFKDGK 161
           ++S+ G N + VRMF   K
Sbjct: 97  SESRSGSNPNRVRMFGPDK 115


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 57   ERIPVLRKTEEIPSNPDSPRRPWLGCPQDK 86
            ER PV RK EE+P  P  P  P    P++K
Sbjct: 9410 ERKPVPRKEEEVPPPPKVPALPKKPVPEEK 9439


>gi|239755159 PREDICTED: similar to tubulin tyrosine ligase-like
           family, member 11 a [Homo sapiens]
          Length = 259

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 9   LSRRSLSLGSKERDVGT--RNYVSQAALRLTRKFKFRSLHERVVQLLEAPERIPVLRKTE 66
           ++RR  S+   +RD G   + +V        RKFK   LHE+V  L++  E    L   +
Sbjct: 148 ITRRWNSMTLDQRDSGMCLQAFVEAFFFLAQRKFKMLPLHEQVASLIDLCEYHLSLLDEK 207

Query: 67  EIPSN---PDSPRRPWLGCPQDKS 87
            +      P   R P  G PQ+ S
Sbjct: 208 RLVCGRGVPSGGRPPHRGPPQEPS 231


>gi|212720861 tubulin tyrosine ligase-like family, member 11 a [Homo
           sapiens]
          Length = 800

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 9   LSRRSLSLGSKERDVGT--RNYVSQAALRLTRKFKFRSLHERVVQLLEAPERIPVLRKTE 66
           ++RR  S+   +RD G   + +V        RKFK   LHE+V  L++  E    L   +
Sbjct: 689 ITRRWNSMTLDQRDSGMCLQAFVEAFFFLAQRKFKMLPLHEQVASLIDLCEYHLSLLDEK 748

Query: 67  EIPSN---PDSPRRPWLGCPQDKS 87
            +      P   R P  G PQ+ S
Sbjct: 749 RLVCGRGVPSGGRPPHRGPPQEPS 772


>gi|157168329 formin 1 [Homo sapiens]
          Length = 1196

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 64  KTEEIPSNPDSPRRPWLGCPQDKSGQ 89
           KTE   ++P+SPRR  +GC  D+  Q
Sbjct: 355 KTEPKGADPESPRREEMGCNADQESQ 380


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 143 TDSKQGKNRSGVRMFKDGKEGKSRKDGGGLYEKQRCST 180
           TDS  G+N SG   +   + G S+  GG  YE Q+ S+
Sbjct: 42  TDSSYGQNYSGYSSYGQSQSGYSQSYGG--YENQKQSS 77


>gi|50593110 5' nucleotidase, cytosolic IB isoform 1 [Homo sapiens]
          Length = 610

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 140 MSLTDSKQGKNRSGVRMFKDGKEGKSRKD 168
           MS T  KQ KN  G+R  K+  E + RK+
Sbjct: 1   MSQTSLKQKKNEPGMRSSKESLEAEKRKE 29


>gi|50593108 5' nucleotidase, cytosolic IB isoform 2 [Homo sapiens]
          Length = 550

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 140 MSLTDSKQGKNRSGVRMFKDGKEGKSRKD 168
           MS T  KQ KN  G+R  K+  E + RK+
Sbjct: 1   MSQTSLKQKKNEPGMRSSKESLEAEKRKE 29


>gi|116734676 GREB1 protein isoform c [Homo sapiens]
          Length = 409

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 71  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 129
           +P+SP  P  GCPQ    + K E      VP     VG  G A +   V  S  P+  P
Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371


>gi|23397644 GREB1 protein isoform b [Homo sapiens]
          Length = 457

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 71  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 129
           +P+SP  P  GCPQ    + K E      VP     VG  G A +   V  S  P+  P
Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371


>gi|23397642 GREB1 protein isoform a [Homo sapiens]
          Length = 1949

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 71  NPDSPRRPWLGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRP 129
           +P+SP  P  GCPQ    + K E      VP     VG  G A +   V  S  P+  P
Sbjct: 317 SPESPSAPDGGCPQGGGNRAKYESAGMSCVP----QVGLVGPASVTFPVVASGEPVSVP 371


>gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]
          Length = 802

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 31/116 (26%), Positives = 43/116 (37%), Gaps = 19/116 (16%)

Query: 20  ERDVGTRNYVSQAALRLTRKFKFRSLHERVVQLLEAPERIPVLRKTEEIPSNPDSPRRPW 79
           + +  + N +  AAL   R   F S          APE + V+  +EE+P         +
Sbjct: 353 QEECSSTNPLFTAALGAPRSTSFPS----------APE-LSVVSASEELPRPSKELDFSY 401

Query: 80  LGCPQDKSGQLKVELQLERAVPTGYIDVGNCGCAFLQIDVGHSSWPLDRPFITLLP 135
           L  P      L+ EL  +      Y      GCAFL        + L  PF T LP
Sbjct: 402 LTFPSGPEPSLQAELSKDLVCTPPYTPHQPGGCAFL--------FSLHEPFQTHLP 449


>gi|6912236 angiopoietin-like 2 precursor [Homo sapiens]
          Length = 493

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 56  PERIPVLRKTEEIPSNPDSPRRPWLGCPQ 84
           P  +P +     +PS+ D P  PW  C Q
Sbjct: 252 PPPLPTMPTLTSLPSSTDKPSGPWRDCLQ 280


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,411,798
Number of Sequences: 37866
Number of extensions: 327976
Number of successful extensions: 906
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 22
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.