Guide to the Human Genome
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Name: LOC100133315 Sequence: fasta or formatted (210aa) NCBI GI: 169202280
Description:

PREDICTED: similar to hCG1640299

Not currently referenced in the text

Other entries for this name:
alt mRNA {210aa} PREDICTED: similar to hCG1640299
alt prot {187aa} PREDICTED: similar to hCG1640299
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         10           1
 C cysteine            3.8          8           1
 D aspartate           6.2         13           2
 E glutamate           2.4          5           1
 F phenylalanine       5.7         12           1
 G glycine             7.6         16           1
 H histidine           1.4          3           1
 I isoleucine          1.9          4           1
 K lysine              5.7         12           1
 L leucine            12.9         27           2
 M methionine          1.9          4           1
 N asparagine          3.3          7           1
 P proline             7.1         15           1
 Q glutamine           3.8          8           1
 R arginine            6.7         14           2
 S serine             11.4         24           3
 T threonine           3.8          8           2
 V valine              6.2         13           2
 W tryptophan          1.4          3           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1640299 
LOC100133315          1.000   PREDICTED: similar to hCG1640299 
LOC100133315          0.403   PREDICTED: similar to hCG1640299 
XRCC1                 0.139   X-ray repair cross complementing protein 1 
GBA                   0.010   glucocerebrosidase precursor 
GBA                   0.010   glucocerebrosidase precursor 
GBA                   0.010   glucocerebrosidase precursor 
GBA                   0.010   glucocerebrosidase precursor 
GBA                   0.010   glucocerebrosidase precursor 
VPS4B                 0.010   vacuolar protein sorting factor 4B 
CCDC157               0.007   coiled-coil domain containing 157 
PSIP1                 0.005   PC4 and SFRS1 interacting protein 1 isoform 2 [Homo...
PSIP1                 0.005   PC4 and SFRS1 interacting protein 1 isoform 1 [Homo...
PSIP1                 0.005   PC4 and SFRS1 interacting protein 1 isoform 2 
LOC100288270          0.005   PREDICTED: hypothetical protein 
LOC100288270          0.005   PREDICTED: hypothetical protein XP_002343262 
GREB1                 0.005   GREB1 protein isoform c 
GREB1                 0.005   GREB1 protein isoform b 
GREB1                 0.005   GREB1 protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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