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Search of human proteins with 239755555
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755555 PREDICTED: similar to NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 4 [Homo sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755555 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 178 9e-46
gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo ... 178 9e-46
gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo ... 178 9e-46
gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens] 126 3e-30
gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens] 126 3e-30
gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo ... 126 3e-30
gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4... 120 3e-28
gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog ... 90 3e-19
gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens] 34 0.029
gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens] 34 0.029
gi|68342038 CD34 antigen isoform a [Homo sapiens] 27 3.5
gi|4502661 CD34 antigen isoform b [Homo sapiens] 27 3.5
gi|197245440 hypothetical protein LOC23285 [Homo sapiens] 26 6.0
gi|192447434 carbonic anhydrase I [Homo sapiens] 26 7.8
gi|192447432 carbonic anhydrase I [Homo sapiens] 26 7.8
gi|192447430 carbonic anhydrase I [Homo sapiens] 26 7.8
gi|4502517 carbonic anhydrase I [Homo sapiens] 26 7.8
gi|46877066 plasticity related gene 3 [Homo sapiens] 26 7.8
gi|46877064 plasticity related gene 3 [Homo sapiens] 26 7.8
>gi|239755555 PREDICTED: similar to NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 4 [Homo sapiens]
Length = 82
Score = 178 bits (451), Expect = 9e-46
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN
Sbjct: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
Query: 61 DQYKSYSVNVDYSKLKKEGPDF 82
DQYKSYSVNVDYSKLKKEGPDF
Sbjct: 61 DQYKSYSVNVDYSKLKKEGPDF 82
>gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo
sapiens]
Length = 82
Score = 178 bits (451), Expect = 9e-46
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN
Sbjct: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
Query: 61 DQYKSYSVNVDYSKLKKEGPDF 82
DQYKSYSVNVDYSKLKKEGPDF
Sbjct: 61 DQYKSYSVNVDYSKLKKEGPDF 82
>gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo
sapiens]
Length = 82
Score = 178 bits (451), Expect = 9e-46
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN
Sbjct: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
Query: 61 DQYKSYSVNVDYSKLKKEGPDF 82
DQYKSYSVNVDYSKLKKEGPDF
Sbjct: 61 DQYKSYSVNVDYSKLKKEGPDF 82
>gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens]
Length = 100
Score = 126 bits (317), Expect = 3e-30
Identities = 58/79 (73%), Positives = 65/79 (82%)
Query: 4 QTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQY 63
Q +SQ KK+PSL+ F+FIG G TGAA Y+L LA F+PDV+W R NN EPWNKL PNDQY
Sbjct: 22 QIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQY 81
Query: 64 KSYSVNVDYSKLKKEGPDF 82
K YSVNVDYSKLKKEGPDF
Sbjct: 82 KFYSVNVDYSKLKKEGPDF 100
>gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens]
Length = 100
Score = 126 bits (317), Expect = 3e-30
Identities = 58/79 (73%), Positives = 65/79 (82%)
Query: 4 QTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQY 63
Q +SQ KK+PSL+ F+FIG G TGAA Y+L LA F+PDV+W R NN EPWNKL PNDQY
Sbjct: 22 QIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQY 81
Query: 64 KSYSVNVDYSKLKKEGPDF 82
K YSVNVDYSKLKKEGPDF
Sbjct: 82 KFYSVNVDYSKLKKEGPDF 100
>gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo
sapiens]
Length = 100
Score = 126 bits (317), Expect = 3e-30
Identities = 58/79 (73%), Positives = 65/79 (82%)
Query: 4 QTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQY 63
Q +SQ KK+PSL+ F+FIG G TGAA Y+L LA F+PDV+W R NN EPWNKL PNDQY
Sbjct: 22 QIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQY 81
Query: 64 KSYSVNVDYSKLKKEGPDF 82
K YSVNVDYSKLKKEGPDF
Sbjct: 82 KFYSVNVDYSKLKKEGPDF 100
>gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4,
9kDa [Homo sapiens]
Length = 81
Score = 120 bits (300), Expect = 3e-28
Identities = 58/82 (70%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 1 MPHQTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPN 60
M Q + Q KK+PSLI F+FIG G+TGA Y+L LA F+PDV W RNN PEPWNKL PN
Sbjct: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNN-PEPWNKLGPN 59
Query: 61 DQYKSYSVNVDYSKLKKEGPDF 82
DQYK YSVNVDYSKLKKE PDF
Sbjct: 60 DQYKFYSVNVDYSKLKKERPDF 81
>gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog
[Homo sapiens]
Length = 87
Score = 90.1 bits (222), Expect = 3e-19
Identities = 43/75 (57%), Positives = 51/75 (68%)
Query: 8 QTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYS 67
Q K++P +I I G AA Y+L LA SPDV W R NNPEPWN+LSPNDQYK +
Sbjct: 13 QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
Query: 68 VNVDYSKLKKEGPDF 82
V+ DY KLKK+ PDF
Sbjct: 73 VSTDYKKLKKDRPDF 87
>gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens]
Length = 83
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 11 KNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYSVNV 70
K LI +F+ + GA+ + + + + DV R NPEPW + P K ++N
Sbjct: 9 KRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
Query: 71 DYSKLKK 77
+ +++
Sbjct: 68 QWKPIEE 74
>gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens]
Length = 83
Score = 33.9 bits (76), Expect = 0.029
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 11 KNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYSVNV 70
K LI +F+ + GA+ + + + + DV R NPEPW + P K ++N
Sbjct: 9 KRKELIPLVVFMTVAAGGASSFAV-YSLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
Query: 71 DYSKLKK 77
+ +++
Sbjct: 68 QWKPIEE 74
>gi|68342038 CD34 antigen isoform a [Homo sapiens]
Length = 385
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 31 WYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYSVNVDYSK 74
W LCL S P + +NN +L + + S NV Y +
Sbjct: 17 WTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE 60
>gi|4502661 CD34 antigen isoform b [Homo sapiens]
Length = 328
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 31 WYVLCLASFSPDVSWARNNNPEPWNKLSPNDQYKSYSVNVDYSK 74
W LCL S P + +NN +L + + S NV Y +
Sbjct: 17 WTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQE 60
>gi|197245440 hypothetical protein LOC23285 [Homo sapiens]
Length = 1354
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 44 SWARNNNPEPWNKLSPNDQYKS 65
SW NN E W+ LS N + KS
Sbjct: 122 SWRGNNKKECWSYLSTNKKMKS 143
>gi|192447434 carbonic anhydrase I [Homo sapiens]
Length = 261
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 40 SPDVSWARNNNPEPWNKLSP 59
SPD + N PE W+KL P
Sbjct: 3 SPDWGYDDKNGPEQWSKLYP 22
>gi|192447432 carbonic anhydrase I [Homo sapiens]
Length = 261
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 40 SPDVSWARNNNPEPWNKLSP 59
SPD + N PE W+KL P
Sbjct: 3 SPDWGYDDKNGPEQWSKLYP 22
>gi|192447430 carbonic anhydrase I [Homo sapiens]
Length = 261
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 40 SPDVSWARNNNPEPWNKLSP 59
SPD + N PE W+KL P
Sbjct: 3 SPDWGYDDKNGPEQWSKLYP 22
>gi|4502517 carbonic anhydrase I [Homo sapiens]
Length = 261
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 40 SPDVSWARNNNPEPWNKLSP 59
SPD + N PE W+KL P
Sbjct: 3 SPDWGYDDKNGPEQWSKLYP 22
>gi|46877066 plasticity related gene 3 [Homo sapiens]
Length = 325
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 7 SQTKKNPSLISCFIF----IGAGSTGAAWYVLCLASF 39
+ T+++ S+I CFIF I AG+ A+Y C +F
Sbjct: 5 NNTQRSYSIIPCFIFVELVIMAGTVLLAYYFECTDTF 41
>gi|46877064 plasticity related gene 3 [Homo sapiens]
Length = 325
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 7 SQTKKNPSLISCFIF----IGAGSTGAAWYVLCLASF 39
+ T+++ S+I CFIF I AG+ A+Y C +F
Sbjct: 5 NNTQRSYSIIPCFIFVELVIMAGTVLLAYYFECTDTF 41
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,740,464
Number of Sequences: 37866
Number of extensions: 154393
Number of successful extensions: 238
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 19
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.