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Search of human proteins with 239755431
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755431 PREDICTED: hypothetical protein [Homo sapiens]
(94 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755431 PREDICTED: hypothetical protein [Homo sapiens] 199 5e-52
gi|239749883 PREDICTED: hypothetical protein XP_002347194 [Homo ... 195 6e-51
gi|239744185 PREDICTED: hypothetical protein XP_002343050 [Homo ... 195 6e-51
gi|145207994 hairy and enhancer of split 7 [Homo sapiens] 32 0.11
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 32 0.14
gi|38787970 tensin like C1 domain containing phosphatase isoform... 30 0.42
gi|38787957 tensin like C1 domain containing phosphatase isoform... 30 0.42
gi|38787941 tensin like C1 domain containing phosphatase isoform... 30 0.42
gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens] 30 0.54
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 30 0.54
gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens] 30 0.54
gi|226437602 NK1 homeobox 2 [Homo sapiens] 28 1.2
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 28 1.2
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 28 1.2
gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo ... 28 1.2
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 28 1.2
gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo ... 28 1.2
gi|169172040 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|169170042 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239509115 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 28 1.6
gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens] 28 1.6
gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens] 28 1.6
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 28 1.6
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 28 2.1
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 28 2.1
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 28 2.1
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 28 2.1
gi|46485465 Numb-interacting protein [Homo sapiens] 28 2.1
gi|166795280 forkhead box N4 [Homo sapiens] 28 2.1
>gi|239755431 PREDICTED: hypothetical protein [Homo sapiens]
Length = 94
Score = 199 bits (505), Expect = 5e-52
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MPTPELAEDGGNWKSGGLQPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
MPTPELAEDGGNWKSGGLQPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR
Sbjct: 1 MPTPELAEDGGNWKSGGLQPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
Query: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA
Sbjct: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
>gi|239749883 PREDICTED: hypothetical protein XP_002347194 [Homo
sapiens]
Length = 94
Score = 195 bits (496), Expect = 6e-51
Identities = 93/94 (98%), Positives = 93/94 (98%)
Query: 1 MPTPELAEDGGNWKSGGLQPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
MPTPELAEDGGNWKSGGLQP PHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR
Sbjct: 1 MPTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
Query: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA
Sbjct: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
>gi|239744185 PREDICTED: hypothetical protein XP_002343050 [Homo
sapiens]
Length = 94
Score = 195 bits (496), Expect = 6e-51
Identities = 93/94 (98%), Positives = 93/94 (98%)
Query: 1 MPTPELAEDGGNWKSGGLQPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
MPTPELAEDGGNWKSGGLQP PHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR
Sbjct: 1 MPTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
Query: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA
Sbjct: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
>gi|145207994 hairy and enhancer of split 7 [Homo sapiens]
Length = 225
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/50 (38%), Positives = 20/50 (40%)
Query: 27 PATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKP 76
PA RP L P+A L P L P P W P AGD G P
Sbjct: 141 PAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAWSPSLCSPRAGDSGAP 190
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 34 KPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPGLAGMQRLVMSAPLA 91
+PS PGLS+L A P +R DP A P L GM R+ ++APLA
Sbjct: 480 EPSQDIEGPGLSILPARDATFSTPSVRQP----DPSAWLSSGPELTGMPRVRLAAPLA 533
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 15/77 (19%)
Query: 15 SGGLQPYPHTLA-PAT------RPLLKPSARYLSPGLSVLFPAAAW--------AVLPGL 59
S GL PYP + PAT P + PGL L+P A A L GL
Sbjct: 524 SEGLYPYPPEMGKPATGDFGYRAPGYREVVILEDPGLPALYPCPACEEKLALPTAALYGL 583
Query: 60 RWQRGGDDPGAGDEGKP 76
R +R + A + GKP
Sbjct: 584 RLEREAGEGWASEAGKP 600
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 15/77 (19%)
Query: 15 SGGLQPYPHTLA-PAT------RPLLKPSARYLSPGLSVLFPAAAW--------AVLPGL 59
S GL PYP + PAT P + PGL L+P A A L GL
Sbjct: 648 SEGLYPYPPEMGKPATGDFGYRAPGYREVVILEDPGLPALYPCPACEEKLALPTAALYGL 707
Query: 60 RWQRGGDDPGAGDEGKP 76
R +R + A + GKP
Sbjct: 708 RLEREAGEGWASEAGKP 724
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 15/77 (19%)
Query: 15 SGGLQPYPHTLA-PAT------RPLLKPSARYLSPGLSVLFPAAAW--------AVLPGL 59
S GL PYP + PAT P + PGL L+P A A L GL
Sbjct: 658 SEGLYPYPPEMGKPATGDFGYRAPGYREVVILEDPGLPALYPCPACEEKLALPTAALYGL 717
Query: 60 RWQRGGDDPGAGDEGKP 76
R +R + A + GKP
Sbjct: 718 RLEREAGEGWASEAGKP 734
>gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 1941
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 36 SARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGK 75
S+ SPGL L + A A PG R + G DPG G+EG+
Sbjct: 681 SSSQASPGL--LSFSVASASRPGRRNKAAGADPGEGEEGR 718
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 36 SARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGK 75
S+ SPGL L + A A PG R + G DPG G+EG+
Sbjct: 980 SSSQASPGL--LSFSVASASRPGRRNKAAGADPGEGEEGR 1017
>gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 1941
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 36 SARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGK 75
S+ SPGL L + A A PG R + G DPG G+EG+
Sbjct: 681 SSSQASPGL--LSFSVASASRPGRRNKAAGADPGEGEEGR 718
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPG 77
RP L+ A L PGL+ A A A+ G + GG P G PG
Sbjct: 100 RPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPG 147
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPG 77
RP L+ A L PGL+ A A A+ G + GG P G PG
Sbjct: 122 RPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPG 169
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPG 77
RP L+ A L PGL+ A A A+ G + GG P G PG
Sbjct: 122 RPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPG 169
>gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 17 GLQPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDP 68
G+ P PH PA P++ P + PG PG+R GG P
Sbjct: 90 GMMPAPHMRGPAMMPMMGPPPPGMMPG----------GPAPGMRPLMGGHRP 131
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPG 77
RP L+ A L PGL+ A A A+ G + GG P G PG
Sbjct: 122 RPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPG 169
>gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 17 GLQPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDP 68
G+ P PH PA P++ P + PG PG+R GG P
Sbjct: 90 GMMPAPHMRGPAMMPMMGPPPPGMMPG----------GPAPGMRPLMGGHRP 131
>gi|169172040 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPGLAGMQRLVM 86
RP P R PG + L P VL G RW+R D G PG + RL++
Sbjct: 86 RPRRCPRPR--CPGRTGLVPG----VLSGPRWRRVPDSRARGAAPAPGSPALNRLIL 136
>gi|169170042 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPGLAGMQRLVM 86
RP P R PG + L P VL G RW+R D G PG + RL++
Sbjct: 86 RPRRCPRPR--CPGRTGLVPG----VLSGPRWRRVPDSRARGAAPAPGSPALNRLIL 136
>gi|239509115 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPGLAGMQRLVM 86
RP P R PG + L P VL G RW+R D G PG + RL++
Sbjct: 86 RPRRCPRPR--CPGRTGLVPG----VLSGPRWRRVPDSRARGAAPAPGSPALNRLIL 136
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 17 GLQPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAV----LPGLRWQRG--GDDPGA 70
GL+ P P+ +P L Y PGL FP A LPG+ + G GD
Sbjct: 818 GLKGQPGLPGPSGQPGL-----YGPPGLHG-FPGAPGQEGPLGLPGIPGREGLPGDRGDP 871
Query: 71 GDEGKPGLAGMQRL 84
GD G PG GM+ L
Sbjct: 872 GDTGAPGPVGMKGL 885
>gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens]
Length = 414
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 8 EDGGNWKSGGLQ----PYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGL 59
++GGN + + YP T P P KP PG +V P W V+ L
Sbjct: 223 DEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNL 278
>gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens]
Length = 403
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 8 EDGGNWKSGGLQ----PYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGL 59
++GGN + + YP T P P KP PG +V P W V+ L
Sbjct: 223 DEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNL 278
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 20 PYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGL 59
P P T PA P++ P R PG+ + P VLPG+
Sbjct: 349 PQPTTAIPAFPPVMVPPFRVPLPGMPIPLP----GVLPGM 384
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 20 PYPHTLAPATRPLLKPSARYLSP 42
P P TLAP+ RPLL P A LSP
Sbjct: 582 PGPATLAPS-RPLLVPKAERLSP 603
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 20 PYPHTLAPATRPLLKPSARYLSP 42
P P TLAP+ RPLL P A LSP
Sbjct: 582 PGPATLAPS-RPLLVPKAERLSP 603
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 20 PYPHTLAPATRPLLKPSARYLSP 42
P P TLAP+ RPLL P A LSP
Sbjct: 582 PGPATLAPS-RPLLVPKAERLSP 603
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 20 PYPHTLAPATRPLLKPSARYLSP 42
P P TLAP+ RPLL P A LSP
Sbjct: 582 PGPATLAPS-RPLLVPKAERLSP 603
>gi|46485465 Numb-interacting protein [Homo sapiens]
Length = 483
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 19 QPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAW-AVLPGLRWQRGGDDPGAGDEGKP 76
+P +L PA L P+A PG + A AW A+LPGLR + G + G P
Sbjct: 332 RPRRLSLVPADVRGLAPAALSALPGALL---AQAWRALLPGLRCPKAGKESRLGPPHSP 387
>gi|166795280 forkhead box N4 [Homo sapiens]
Length = 517
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 11 GNWKSGGLQPYPHTLAPATRPL--LKPSARYLSP 42
G S GLQ PH +PAT+P L P A+ P
Sbjct: 126 GGQPSSGLQDPPHLYSPATQPQFPLPPGAQQCPP 159
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,308,449
Number of Sequences: 37866
Number of extensions: 299859
Number of successful extensions: 822
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 112
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.