Search of human proteins with 239754904

Search of human proteins with 239754904

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754904 PREDICTED: hypothetical protein [Homo sapiens]
         (230 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754904 PREDICTED: hypothetical protein [Homo sapiens]           475   e-134
gi|239749444 PREDICTED: hypothetical protein XP_002347045 [Homo ...   475   e-134
gi|239743576 PREDICTED: hypothetical protein XP_002342896 [Homo ...   475   e-134
gi|239757462 PREDICTED: hypothetical protein XP_002345445 [Homo ...    31   0.78 
gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens]    29   3.9  
gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo sapi...    29   3.9  
gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapi...    29   3.9  
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]           28   6.6  
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]           28   6.6  
gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo ...    28   6.6  
gi|10863949 angiopoietin-like 7 [Homo sapiens]                         28   8.6  
gi|47578107 delangin isoform B [Homo sapiens]                          28   8.6  
gi|47578105 delangin isoform A [Homo sapiens]                          28   8.6  

>gi|239754904 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 230

 Score =  475 bits (1223), Expect = e-134
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MEDHHDIHEALLHVTPPSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQ 60
           MEDHHDIHEALLHVTPPSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQ
Sbjct: 1   MEDHHDIHEALLHVTPPSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQ 60

Query: 61  VAIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASL 120
           VAIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASL
Sbjct: 61  VAIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASL 120

Query: 121 FVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLVFYGVPGQKNKNKPNE 180
           FVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLVFYGVPGQKNKNKPNE
Sbjct: 121 FVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLVFYGVPGQKNKNKPNE 180

Query: 181 FEAGSQTKIHKTKRRHVVLPARTLHTTFLLPEHAGGVNDCSKVDWSRNVC 230
           FEAGSQTKIHKTKRRHVVLPARTLHTTFLLPEHAGGVNDCSKVDWSRNVC
Sbjct: 181 FEAGSQTKIHKTKRRHVVLPARTLHTTFLLPEHAGGVNDCSKVDWSRNVC 230


>gi|239749444 PREDICTED: hypothetical protein XP_002347045 [Homo
           sapiens]
          Length = 230

 Score =  475 bits (1223), Expect = e-134
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MEDHHDIHEALLHVTPPSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQ 60
           MEDHHDIHEALLHVTPPSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQ
Sbjct: 1   MEDHHDIHEALLHVTPPSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQ 60

Query: 61  VAIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASL 120
           VAIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASL
Sbjct: 61  VAIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASL 120

Query: 121 FVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLVFYGVPGQKNKNKPNE 180
           FVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLVFYGVPGQKNKNKPNE
Sbjct: 121 FVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLVFYGVPGQKNKNKPNE 180

Query: 181 FEAGSQTKIHKTKRRHVVLPARTLHTTFLLPEHAGGVNDCSKVDWSRNVC 230
           FEAGSQTKIHKTKRRHVVLPARTLHTTFLLPEHAGGVNDCSKVDWSRNVC
Sbjct: 181 FEAGSQTKIHKTKRRHVVLPARTLHTTFLLPEHAGGVNDCSKVDWSRNVC 230


>gi|239743576 PREDICTED: hypothetical protein XP_002342896 [Homo
           sapiens]
          Length = 230

 Score =  475 bits (1223), Expect = e-134
 Identities = 230/230 (100%), Positives = 230/230 (100%)

Query: 1   MEDHHDIHEALLHVTPPSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQ 60
           MEDHHDIHEALLHVTPPSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQ
Sbjct: 1   MEDHHDIHEALLHVTPPSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQ 60

Query: 61  VAIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASL 120
           VAIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASL
Sbjct: 61  VAIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASL 120

Query: 121 FVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLVFYGVPGQKNKNKPNE 180
           FVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLVFYGVPGQKNKNKPNE
Sbjct: 121 FVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLVFYGVPGQKNKNKPNE 180

Query: 181 FEAGSQTKIHKTKRRHVVLPARTLHTTFLLPEHAGGVNDCSKVDWSRNVC 230
           FEAGSQTKIHKTKRRHVVLPARTLHTTFLLPEHAGGVNDCSKVDWSRNVC
Sbjct: 181 FEAGSQTKIHKTKRRHVVLPARTLHTTFLLPEHAGGVNDCSKVDWSRNVC 230


>gi|239757462 PREDICTED: hypothetical protein XP_002345445 [Homo
           sapiens]
          Length = 259

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 62  AIFNSTNKTKFFHFQASGGRLQGSGALFQPRVRRGTYCFWEGPRVGLC-CALDP 114
           ++F  T   + FHFQ S GR  G+G         G     EG +V  C C+L P
Sbjct: 190 SVFTQTVNARDFHFQVSAGRGGGAGR------EEGATAAAEGRKVSACICSLAP 237


>gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens]
          Length = 771

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 117 QASLFVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLV 165
           Q S   EFS+ + + A  S  I+ V   +    +  F +PP LQ+ +L+
Sbjct: 363 QKSSDKEFSVQSSARAEESTAIIAVVQKMIENYEALFMVPPDLQNEVLI 411


>gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo
           sapiens]
          Length = 765

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 117 QASLFVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLV 165
           Q S   EFS+ + + A  S  I+ V   +    +  F +PP LQ+ +L+
Sbjct: 566 QKSSDKEFSVQSSARAEESTAIIAVVQKMIENYEALFMVPPDLQNEVLI 614


>gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo
           sapiens]
          Length = 974

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 117 QASLFVEFSLGAESWARSSPGIVGVSHSLTHGAQGKFSLPPPLQSILLV 165
           Q S   EFS+ + + A  S  I+ V   +    +  F +PP LQ+ +L+
Sbjct: 566 QKSSDKEFSVQSSARAEESTAIIAVVQKMIENYEALFMVPPDLQNEVLI 614


>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
          Length = 4302

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 84   GSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASLFVEFSL---GAESWARSSPGIVG 140
            G   L Q R++   Y    GPRV  C A   F  +   V +     G+ +WA S+P ++G
Sbjct: 3744 GPPRLRQVRLQEALYPDPPGPRVHTCSAAGGFSTSDYDVGWESPHNGSGTWAYSAPDLLG 3803


>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
          Length = 4303

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 84   GSGALFQPRVRRGTYCFWEGPRVGLCCALDPFLQASLFVEFSL---GAESWARSSPGIVG 140
            G   L Q R++   Y    GPRV  C A   F  +   V +     G+ +WA S+P ++G
Sbjct: 3745 GPPRLRQVRLQEALYPDPPGPRVHTCSAAGGFSTSDYDVGWESPHNGSGTWAYSAPDLLG 3804


>gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo
           sapiens]
          Length = 271

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 62  AIFNSTNKTKFFHFQASGGRLQGSGA 87
           ++F  T   + FHFQ S GR  G GA
Sbjct: 194 SVFTQTVNARDFHFQVSAGRGGGGGA 219


>gi|10863949 angiopoietin-like 7 [Homo sapiens]
          Length = 346

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 13 HVTP--PSLKADISKCMPLKVTMSQRLKGTIGISEVKKKKERKEGTVVSQVAIFNSTNK 69
          H TP  P LKA  + C  +K   +Q    +  +SE+ KK+ER   +VV QV    S +K
Sbjct: 32 HKTPAQPQLKA-ANCCEEVKELKAQVANLSSLLSELNKKQERDWVSVVMQVMELESNSK 89


>gi|47578107 delangin isoform B [Homo sapiens]
          Length = 2697

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 7    IHEALLHVTPPSLKADISKCMPL--KVTMSQRLKGTI 41
            I +++L   PP L A+I   MPL  +V M++R + T+
Sbjct: 1043 IDQSVLKELPPELLAEIESTMPLCERVKMNKRKRSTV 1079


>gi|47578105 delangin isoform A [Homo sapiens]
          Length = 2804

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 7    IHEALLHVTPPSLKADISKCMPL--KVTMSQRLKGTI 41
            I +++L   PP L A+I   MPL  +V M++R + T+
Sbjct: 1043 IDQSVLKELPPELLAEIESTMPLCERVKMNKRKRSTV 1079


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,703,406
Number of Sequences: 37866
Number of extensions: 426851
Number of successful extensions: 841
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 13
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.