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Search of human proteins with 239754279
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754279 PREDICTED: hypothetical protein XP_002345940 [Homo
sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754279 PREDICTED: hypothetical protein XP_002345940 [Homo ... 517 e-147
gi|239748812 PREDICTED: hypothetical protein XP_002346807 [Homo ... 517 e-147
gi|239740912 PREDICTED: hypothetical protein XP_002344084 [Homo ... 517 e-147
gi|239740849 PREDICTED: hypothetical protein XP_002344051 [Homo ... 514 e-146
gi|239754376 PREDICTED: similar to putative p150 [Homo sapiens] 250 9e-67
gi|239748989 PREDICTED: hypothetical protein XP_002346845 [Homo ... 250 9e-67
gi|239743009 PREDICTED: hypothetical protein XP_002342695 [Homo ... 250 9e-67
gi|239752486 PREDICTED: hypothetical protein XP_002347335 [Homo ... 100 1e-21
gi|157168360 acetylserotonin O-methyltransferase [Homo sapiens] 56 2e-08
gi|239754856 PREDICTED: p150-like [Homo sapiens] 51 8e-07
gi|239749395 PREDICTED: p150-like [Homo sapiens] 51 8e-07
gi|239743530 PREDICTED: p150-like [Homo sapiens] 51 8e-07
gi|23238222 COP9 constitutive photomorphogenic homolog subunit 3... 29 4.2
gi|61744454 retinal G-protein coupled receptor isoform 2 [Homo s... 28 7.1
gi|61744452 retinal G-protein coupled receptor isoform 3 [Homo s... 28 7.1
gi|21361329 retinal G-protein coupled receptor isoform 1 [Homo s... 28 7.1
>gi|239754279 PREDICTED: hypothetical protein XP_002345940 [Homo
sapiens]
Length = 240
Score = 517 bits (1331), Expect = e-147
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC
Sbjct: 1 MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
Query: 61 SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK
Sbjct: 61 SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
Query: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT
Sbjct: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
Query: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN
Sbjct: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
>gi|239748812 PREDICTED: hypothetical protein XP_002346807 [Homo
sapiens]
Length = 240
Score = 517 bits (1331), Expect = e-147
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC
Sbjct: 1 MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
Query: 61 SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK
Sbjct: 61 SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
Query: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT
Sbjct: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
Query: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN
Sbjct: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
>gi|239740912 PREDICTED: hypothetical protein XP_002344084 [Homo
sapiens]
Length = 240
Score = 517 bits (1331), Expect = e-147
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC
Sbjct: 1 MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
Query: 61 SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK
Sbjct: 61 SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
Query: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT
Sbjct: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
Query: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN
Sbjct: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
>gi|239740849 PREDICTED: hypothetical protein XP_002344051 [Homo
sapiens]
Length = 240
Score = 514 bits (1324), Expect = e-146
Identities = 239/240 (99%), Positives = 239/240 (99%)
Query: 1 MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC
Sbjct: 1 MGENFCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKC 60
Query: 61 SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK
Sbjct: 61 SSSLAIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWK 120
Query: 121 SVWRFLRDLELEIPFDPAIPLLGIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
SVWRFLRDLELEIPFDPAIPLL IYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT
Sbjct: 121 SVWRFLRDLELEIPFDPAIPLLDIYPKDYKTCCYKDTCTRMFIVALFTIAKTWNQPKCPT 180
Query: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN
Sbjct: 181 MIDWIKKMWHIYTMEYYAAIKNDEFMSFVGTWMKLETIILSKLSQGQKTKHHMFSLIDGN 240
>gi|239754376 PREDICTED: similar to putative p150 [Homo sapiens]
Length = 295
Score = 250 bits (638), Expect = 9e-67
Identities = 114/126 (90%), Positives = 117/126 (92%)
Query: 5 FCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKCSSSL 64
F YSSDKGLISRIYNE KQIYKKKTNNPI KWAKDMNRHFSKEDIY AK+HMKKCS SL
Sbjct: 170 FATYSSDKGLISRIYNEFKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSPSL 229
Query: 65 AIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWKSVWR 124
AI EMQIKTTMR+HLT VRMA+IKKSGNNRCWRGCGEIGTLLHCWWDCKL QPLWKSVWR
Sbjct: 230 AIREMQIKTTMRYHLTPVRMAVIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQPLWKSVWR 289
Query: 125 FLRDLE 130
FLRDLE
Sbjct: 290 FLRDLE 295
>gi|239748989 PREDICTED: hypothetical protein XP_002346845 [Homo
sapiens]
Length = 295
Score = 250 bits (638), Expect = 9e-67
Identities = 114/126 (90%), Positives = 117/126 (92%)
Query: 5 FCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKCSSSL 64
F YSSDKGLISRIYNE KQIYKKKTNNPI KWAKDMNRHFSKEDIY AK+HMKKCS SL
Sbjct: 170 FATYSSDKGLISRIYNEFKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSPSL 229
Query: 65 AIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWKSVWR 124
AI EMQIKTTMR+HLT VRMA+IKKSGNNRCWRGCGEIGTLLHCWWDCKL QPLWKSVWR
Sbjct: 230 AIREMQIKTTMRYHLTPVRMAVIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQPLWKSVWR 289
Query: 125 FLRDLE 130
FLRDLE
Sbjct: 290 FLRDLE 295
>gi|239743009 PREDICTED: hypothetical protein XP_002342695 [Homo
sapiens]
Length = 295
Score = 250 bits (638), Expect = 9e-67
Identities = 114/126 (90%), Positives = 117/126 (92%)
Query: 5 FCIYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKCSSSL 64
F YSSDKGLISRIYNE KQIYKKKTNNPI KWAKDMNRHFSKEDIY AK+HMKKCS SL
Sbjct: 170 FATYSSDKGLISRIYNEFKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSPSL 229
Query: 65 AIGEMQIKTTMRFHLTLVRMAIIKKSGNNRCWRGCGEIGTLLHCWWDCKLAQPLWKSVWR 124
AI EMQIKTTMR+HLT VRMA+IKKSGNNRCWRGCGEIGTLLHCWWDCKL QPLWKSVWR
Sbjct: 230 AIREMQIKTTMRYHLTPVRMAVIKKSGNNRCWRGCGEIGTLLHCWWDCKLVQPLWKSVWR 289
Query: 125 FLRDLE 130
FLRDLE
Sbjct: 290 FLRDLE 295
>gi|239752486 PREDICTED: hypothetical protein XP_002347335 [Homo
sapiens]
Length = 137
Score = 100 bits (248), Expect = 1e-21
Identities = 54/89 (60%), Positives = 66/89 (74%), Gaps = 4/89 (4%)
Query: 7 IYSSDKGLISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHMKKCSSSLAI 66
IY SDKGLI RIY E QIYKKK N+ K +K + +KEDIY A H+K+ +SSL I
Sbjct: 53 IYPSDKGLICRIYKE--QIYKKKKNH--QKVSKGYEQTLTKEDIYRANEHVKQSTSSLVI 108
Query: 67 GEMQIKTTMRFHLTLVRMAIIKKSGNNRC 95
EM+IKTTMR++LT +RMAI+KKSG NRC
Sbjct: 109 REMEIKTTMRYNLTPLRMAIVKKSGKNRC 137
>gi|157168360 acetylserotonin O-methyltransferase [Homo sapiens]
Length = 373
Score = 56.2 bits (134), Expect = 2e-08
Identities = 26/30 (86%), Positives = 28/30 (93%)
Query: 210 GTWMKLETIILSKLSQGQKTKHHMFSLIDG 239
GTW+KLETIILSKLSQGQKTKH +FSLI G
Sbjct: 188 GTWIKLETIILSKLSQGQKTKHRVFSLIGG 217
>gi|239754856 PREDICTED: p150-like [Homo sapiens]
Length = 262
Score = 51.2 bits (121), Expect = 8e-07
Identities = 24/26 (92%), Positives = 24/26 (92%)
Query: 5 FCIYSSDKGLISRIYNELKQIYKKKT 30
F YSSDKGLISRIYNELKQIYKKKT
Sbjct: 228 FATYSSDKGLISRIYNELKQIYKKKT 253
>gi|239749395 PREDICTED: p150-like [Homo sapiens]
Length = 262
Score = 51.2 bits (121), Expect = 8e-07
Identities = 24/26 (92%), Positives = 24/26 (92%)
Query: 5 FCIYSSDKGLISRIYNELKQIYKKKT 30
F YSSDKGLISRIYNELKQIYKKKT
Sbjct: 228 FATYSSDKGLISRIYNELKQIYKKKT 253
>gi|239743530 PREDICTED: p150-like [Homo sapiens]
Length = 262
Score = 51.2 bits (121), Expect = 8e-07
Identities = 24/26 (92%), Positives = 24/26 (92%)
Query: 5 FCIYSSDKGLISRIYNELKQIYKKKT 30
F YSSDKGLISRIYNELKQIYKKKT
Sbjct: 228 FATYSSDKGLISRIYNELKQIYKKKT 253
>gi|23238222 COP9 constitutive photomorphogenic homolog subunit 3
[Homo sapiens]
Length = 423
Score = 28.9 bits (63), Expect = 4.2
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 15 ISRIYNELKQIYKKKTNNPINKWAKDMNRHFSKEDIYTAKRHM---KKCSSSLAIGEMQI 71
+S Y+EL Q+Y TNNP ++ +N+H + +T +M K+C SSL +Q
Sbjct: 256 LSNAYHELAQVY--STNNP-SELRNLVNKH---SETFTRDNNMGLVKQCLSSLYKKNIQR 309
Query: 72 KTTMRFHLTLVRMA 85
T L+L MA
Sbjct: 310 LTKTFLTLSLQDMA 323
>gi|61744454 retinal G-protein coupled receptor isoform 2 [Homo
sapiens]
Length = 291
Score = 28.1 bits (61), Expect = 7.1
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 112 CKLAQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYK---TCCYKDTC--TRMFIVAL 166
C +Q W S + + L F A+PLLG DY+ TCC D R F L
Sbjct: 118 CTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFL 177
Query: 167 FTIA 170
FT++
Sbjct: 178 FTMS 181
>gi|61744452 retinal G-protein coupled receptor isoform 3 [Homo
sapiens]
Length = 253
Score = 28.1 bits (61), Expect = 7.1
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 112 CKLAQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYK---TCCYKDTC--TRMFIVAL 166
C +Q W S + + L F A+PLLG DY+ TCC D R F L
Sbjct: 118 CTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFL 177
Query: 167 FTIA 170
FT++
Sbjct: 178 FTMS 181
>gi|21361329 retinal G-protein coupled receptor isoform 1 [Homo
sapiens]
Length = 295
Score = 28.1 bits (61), Expect = 7.1
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 112 CKLAQPLWKSVWRFLRDLELEIPFDPAIPLLGIYPKDYK---TCCYKDTC--TRMFIVAL 166
C +Q W S + + L F A+PLLG DY+ TCC D R F L
Sbjct: 122 CTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSFL 181
Query: 167 FTIA 170
FT++
Sbjct: 182 FTMS 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,004,816
Number of Sequences: 37866
Number of extensions: 368674
Number of successful extensions: 888
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 16
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.