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Search of human proteins with 239754072
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754072 PREDICTED: hypothetical protein [Homo sapiens]
(379 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754072 PREDICTED: hypothetical protein [Homo sapiens] 790 0.0
gi|239748599 PREDICTED: hypothetical protein XP_002346728 [Homo ... 350 2e-96
gi|239742616 PREDICTED: hypothetical protein XP_002342550 [Homo ... 350 2e-96
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 40 0.005
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 40 0.005
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 40 0.005
gi|226498192 atonal homolog 8 [Homo sapiens] 39 0.008
gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo sa... 35 0.085
gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 35 0.11
gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 35 0.11
gi|169210212 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|169210418 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|169209848 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens] 33 0.55
gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens] 33 0.55
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 32 0.72
gi|50428940 mediator complex subunit 25 [Homo sapiens] 32 0.72
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens] 32 0.94
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens] 32 0.94
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens] 32 0.94
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 32 0.94
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 32 0.94
gi|194294543 alpha 3 type IV collagen binding protein isoform 3 ... 32 0.94
gi|26051266 potassium voltage-gated channel KQT-like protein 2 i... 32 0.94
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 32 1.2
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 32 1.2
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 32 1.2
gi|14249590 maelstrom homolog [Homo sapiens] 32 1.2
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 31 1.6
gi|169194701 PREDICTED: hypothetical protein [Homo sapiens] 31 1.6
>gi|239754072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 379
Score = 790 bits (2040), Expect = 0.0
Identities = 379/379 (100%), Positives = 379/379 (100%)
Query: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG
Sbjct: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
Query: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQEKETQNGRG 120
VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQEKETQNGRG
Sbjct: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQEKETQNGRG 120
Query: 121 KPLQATLNFFTVESWAKSEDPGIRVFVGSLNGSPPRAPGCRWMLFRGSLKTERQHRSFYF 180
KPLQATLNFFTVESWAKSEDPGIRVFVGSLNGSPPRAPGCRWMLFRGSLKTERQHRSFYF
Sbjct: 121 KPLQATLNFFTVESWAKSEDPGIRVFVGSLNGSPPRAPGCRWMLFRGSLKTERQHRSFYF 180
Query: 181 KKVALVIQSRSFGWQRGNCLKTKLAFKKGQTQPPAISQSPGAMQIISSVLQTRVSLCGCS 240
KKVALVIQSRSFGWQRGNCLKTKLAFKKGQTQPPAISQSPGAMQIISSVLQTRVSLCGCS
Sbjct: 181 KKVALVIQSRSFGWQRGNCLKTKLAFKKGQTQPPAISQSPGAMQIISSVLQTRVSLCGCS 240
Query: 241 GHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRA 300
GHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRA
Sbjct: 241 GHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRA 300
Query: 301 RAPGRAVLRALVLSCCFPEEGLRELLEQTREREEGSTLKILSKVKFEACRKEEKSVEKCR 360
RAPGRAVLRALVLSCCFPEEGLRELLEQTREREEGSTLKILSKVKFEACRKEEKSVEKCR
Sbjct: 301 RAPGRAVLRALVLSCCFPEEGLRELLEQTREREEGSTLKILSKVKFEACRKEEKSVEKCR 360
Query: 361 YRVCGKVLHGDWLEMPFSP 379
YRVCGKVLHGDWLEMPFSP
Sbjct: 361 YRVCGKVLHGDWLEMPFSP 379
>gi|239748599 PREDICTED: hypothetical protein XP_002346728 [Homo
sapiens]
Length = 285
Score = 350 bits (897), Expect = 2e-96
Identities = 179/233 (76%), Positives = 184/233 (78%), Gaps = 12/233 (5%)
Query: 158 PGCRWMLFRGSLKTERQHRSFYFKKVALVIQSRSFGWQRGNC-----------LKTKLAF 206
P C W H ++++ S + W G C LK
Sbjct: 54 PECPWCGVPALTAASNGHYYLADRRISESATS-GYPWAPGYCTTERCKPNWSLLKASFQG 112
Query: 207 KKGQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRG 266
QTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRG
Sbjct: 113 AASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRG 172
Query: 267 RGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSCCFPEEGLRELL 326
RGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLS CFPEEGLRELL
Sbjct: 173 RGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELL 232
Query: 327 EQTREREEGSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 379
EQTREREEGSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP
Sbjct: 233 EQTREREEGSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 285
Score = 239 bits (611), Expect = 2e-63
Identities = 112/116 (96%), Positives = 113/116 (97%)
Query: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG
Sbjct: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
Query: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQEKETQ 116
VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQ +Q
Sbjct: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQ 116
>gi|239742616 PREDICTED: hypothetical protein XP_002342550 [Homo
sapiens]
Length = 285
Score = 350 bits (897), Expect = 2e-96
Identities = 179/233 (76%), Positives = 184/233 (78%), Gaps = 12/233 (5%)
Query: 158 PGCRWMLFRGSLKTERQHRSFYFKKVALVIQSRSFGWQRGNC-----------LKTKLAF 206
P C W H ++++ S + W G C LK
Sbjct: 54 PECPWCGVPALTAASNGHYYLADRRISESATS-GYPWAPGYCTTERCKPNWSLLKASFQG 112
Query: 207 KKGQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRG 266
QTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRG
Sbjct: 113 AASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRG 172
Query: 267 RGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSCCFPEEGLRELL 326
RGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLS CFPEEGLRELL
Sbjct: 173 RGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELL 232
Query: 327 EQTREREEGSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 379
EQTREREEGSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP
Sbjct: 233 EQTREREEGSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 285
Score = 239 bits (611), Expect = 2e-63
Identities = 112/116 (96%), Positives = 113/116 (97%)
Query: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG
Sbjct: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
Query: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQEKETQ 116
VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQ +Q
Sbjct: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQ 116
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 39.7 bits (91), Expect = 0.005
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 205 AFKKGQTQPPAISQSPGA-MQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPR--- 260
A +K Q PP SP A M+ S L +RV+ S PP P+P+ PR
Sbjct: 146 ANQKRQRMPPLPPSSPKARMERASRKLPSRVN-----------SRPPHPAPTRPTPRVQG 194
Query: 261 -----PSSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGR 305
P + G+G+ W+P S P P +L GR+R GR
Sbjct: 195 GFGREPRAAAGQGRGWLPPCRLRLQDSGPRRRPGPGPPALRSGRSRGSGR 244
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 39.7 bits (91), Expect = 0.005
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 205 AFKKGQTQPPAISQSPGA-MQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPR--- 260
A +K Q PP SP A M+ S L +RV+ S PP P+P+ PR
Sbjct: 146 ANQKRQRMPPLPPSSPKARMERASRKLPSRVN-----------SRPPHPAPTRPTPRVQG 194
Query: 261 -----PSSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGR 305
P + G+G+ W+P S P P +L GR+R GR
Sbjct: 195 GFGREPRAAAGQGRGWLPPCRLRLQDSGPRRRPGPGPPALRSGRSRGSGR 244
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 39.7 bits (91), Expect = 0.005
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 205 AFKKGQTQPPAISQSPGA-MQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPR--- 260
A +K Q PP SP A M+ S L +RV+ S PP P+P+ PR
Sbjct: 146 ANQKRQRMPPLPPSSPKARMERASRKLPSRVN-----------SRPPHPAPTRPTPRVQG 194
Query: 261 -----PSSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGR 305
P + G+G+ W+P S P P +L GR+R GR
Sbjct: 195 GFGREPRAAAGQGRGWLPPCRLRLQDSGPRRRPGPGPPALRSGRSRGSGR 244
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 38.9 bits (89), Expect = 0.008
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 28/148 (18%)
Query: 213 PPAI-SQSPG---AMQIISSVLQTRVSLCGCSGHPAPAS--FPPLPSPSLLRPRPSSCRG 266
PPA SQ+PG A L+ R+ LC PAP++ PP P S +RP P + G
Sbjct: 129 PPAPQSQAPGGPEAQPFREPGLRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPTRPG 188
Query: 267 RGQ-CWVPHA-YSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSCCFPEEGLRE 324
+ H Y++ SS A+ PG A A + ++AL + R
Sbjct: 189 ESSYSSISHVIYNNHQDSS-------ASPRKRPGEATA-ASSEIKAL--------QQTRR 232
Query: 325 LLEQTREREEGSTLKILSKVKFEACRKE 352
LL RER T+ FEA RK+
Sbjct: 233 LLANARERTRVHTI----SAAFEALRKQ 256
>gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo
sapiens]
Length = 363
Score = 35.4 bits (80), Expect = 0.085
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 242 HPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHL---LPPPAASSLFPG 298
HP+P PP P S+L P+PS+ + + P + +SSS L + +P PA+
Sbjct: 237 HPSPPG-PPTPIRSVLAPQPSTSNSQ-RLPRPQGAAAKSSSQLPIPSAIPRPASRMPLTS 294
Query: 299 RARAPGRAVL 308
R+ PGR L
Sbjct: 295 RSVPPGRGAL 304
>gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.11
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 217 SQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAY 276
S+SP + + S R G SG A + PP P S+L P+PS+ + + P
Sbjct: 184 SKSPASSPLTRSTPPVR-GRAGPSGRAAAS--PPTPIRSVLAPQPSTSNSQ-RLPRPQGA 239
Query: 277 SDRSSSSLHL---LPPPAASSLFPGRARAPGRAVL 308
+ +SSS L + +P PA+ R+ PGR L
Sbjct: 240 AAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGAL 274
>gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.11
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 217 SQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAY 276
S+SP + + S R G SG A + PP P S+L P+PS+ + + P
Sbjct: 184 SKSPASSPLTRSTPPVR-GRAGPSGRAAAS--PPTPIRSVLAPQPSTSNSQ-RLPRPQGA 239
Query: 277 SDRSSSSLHL---LPPPAASSLFPGRARAPGRAVL 308
+ +SSS L + +P PA+ R+ PGR L
Sbjct: 240 AAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGAL 274
>gi|169210212 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 35.0 bits (79), Expect = 0.11
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 214 PAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRP--RPSSCRGRGQCW 271
P S+ PG ++ R+ S PAP PP SLL P P+ G G
Sbjct: 91 PRCSRRPGGSRLRGGTWTPRLPPTLVSRLPAPVRCPPAKGASLLHPWSPPTQASGLG--- 147
Query: 272 VPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSC 315
P A R +L L A + PGR G V A + +C
Sbjct: 148 -PQAVGGRQDRALQL-----ACEVGPGRGPQRGSWVAPACLWAC 185
>gi|169210418 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 35.0 bits (79), Expect = 0.11
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 214 PAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRP--RPSSCRGRGQCW 271
P S+ PG ++ R+ S PAP PP SLL P P+ G G
Sbjct: 91 PRCSRRPGGSRLRGGTWTPRLPPTLVSRLPAPVRCPPAKGASLLHPWSPPTQASGLG--- 147
Query: 272 VPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSC 315
P A R +L L A + PGR G V A + +C
Sbjct: 148 -PQAVGGRQDRALQL-----ACEVGPGRGPQRGSWVAPACLWAC 185
>gi|169209848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 35.0 bits (79), Expect = 0.11
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 214 PAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRP--RPSSCRGRGQCW 271
P S+ PG ++ R+ S PAP PP SLL P P+ G G
Sbjct: 91 PRCSRRPGGSRLRGGTWTPRLPPTLVSRLPAPVRCPPAKGASLLHPWSPPTQASGLG--- 147
Query: 272 VPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSC 315
P A R +L L A + PGR G V A + +C
Sbjct: 148 -PQAVGGRQDRALQL-----ACEVGPGRGPQRGSWVAPACLWAC 185
>gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 306
Score = 32.7 bits (73), Expect = 0.55
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 222 AMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSS 281
++Q + L L G PAP + PP P PS P+ +C G +D
Sbjct: 165 SVQFLHCQLSRCRRLRGVRRAPAPLTPPPPPPPSRCLPQDEACADTGSGSAEGLAAD--G 222
Query: 282 SSLHLL----------PPPAASSLFPGRARAP 303
LH L PPP PGRA P
Sbjct: 223 PHLHTLTQPIVVTVPRPPPRPPKSVPGRAVRP 254
>gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 32.7 bits (73), Expect = 0.55
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 222 AMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSS 281
++Q + L L G PAP + PP P PS P+ +C G +D
Sbjct: 217 SVQFLHCQLSRCRRLRGVRRAPAPLTPPPPPPPSRCLPQDEACADTGSGSAEGLAAD--G 274
Query: 282 SSLHLL----------PPPAASSLFPGRARAP 303
LH L PPP PGRA P
Sbjct: 275 PHLHTLTQPIVVTVPRPPPRPPKSVPGRAVRP 306
>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
sapiens]
Length = 761
Score = 32.3 bits (72), Expect = 0.72
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 232 TRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLLPPPA 291
T V+ C G PA+F P P P L P P + + PH R S L PPPA
Sbjct: 325 TAVAFCR-RGFFRPAAFSP-PPPRLFAPLPR------RLFHPHC---RGFLSPRLFPPPA 373
Query: 292 ASSLFPGRARAPGR 305
A++ P R P R
Sbjct: 374 AAAFCPPRLFHPRR 387
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 32.3 bits (72), Expect = 0.72
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 209 GQTQPPAISQSP-GAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGR 267
GQ QP +Q P GA Q G P AS PP P P +LRP+ +
Sbjct: 603 GQPQPQGTAQPPPGAPQ----------------GPPGAASGPPPPGP-ILRPQNPGANPQ 645
Query: 268 GQCWV-----PHAYSDRSSSSLHLLPPPAASSLFP 297
+ + P +SLH L PP A +L P
Sbjct: 646 LRSLLLNPPPPQTGVPPPQASLHHLQPPGAPALLP 680
>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3874
Score = 32.0 bits (71), Expect = 0.94
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 202 TKLAFKKGQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPA--------------- 246
T +AF+ P I P A+ + SV QT + C G PAP
Sbjct: 2470 TSVAFRVEIHTVPTIRSGPPAVNV--SVNQTALLPCQADGVPAPLVSWRKDRVPLDPRSP 2527
Query: 247 SFPPLPSPSL-LRPRPSSCRGRGQCWVPH-AYSDRSSSSLHLLPPPA 291
F LP SL ++P + G C + A SDR L +L PPA
Sbjct: 2528 RFEILPEGSLRIQPVLAQDAGHYLCLASNSAGSDRQGRDLRVLEPPA 2574
>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 5065
Score = 32.0 bits (71), Expect = 0.94
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 202 TKLAFKKGQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPA--------------- 246
T +AF+ P I P A+ + SV QT + C G PAP
Sbjct: 3661 TSVAFRVEIHTVPTIRSGPPAVNV--SVNQTALLPCQADGVPAPLVSWRKDRVPLDPRSP 3718
Query: 247 SFPPLPSPSL-LRPRPSSCRGRGQCWVPH-AYSDRSSSSLHLLPPPA 291
F LP SL ++P + G C + A SDR L +L PPA
Sbjct: 3719 RFEILPEGSLRIQPVLAQDAGHYLCLASNSAGSDRQGRDLRVLEPPA 3765
>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3783
Score = 32.0 bits (71), Expect = 0.94
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 19/107 (17%)
Query: 202 TKLAFKKGQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPA--------------- 246
T +AF+ P I P A+ + SV QT + C G PAP
Sbjct: 2379 TSVAFRVEIHTVPTIRSGPPAVNV--SVNQTALLPCQADGVPAPLVSWRKDRVPLDPRSP 2436
Query: 247 SFPPLPSPSL-LRPRPSSCRGRGQCWVPH-AYSDRSSSSLHLLPPPA 291
F LP SL ++P + G C + A SDR L +L PPA
Sbjct: 2437 RFEILPEGSLRIQPVLAQDAGHYLCLASNSAGSDRQGRDLRVLEPPA 2483
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 32.0 bits (71), Expect = 0.94
Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 212 QPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCW 271
Q PA+ + A+ ++SSV + SL PAP PP P L P GR W
Sbjct: 19 QQPALWPTLAALALLSSVAE--ASLGSAPRSPAPREGPP---PVLASPAGHLPGGRTARW 73
Query: 272 VP-HAYSDRSSSSLHLLPPPAASSLFP--GRARAPGRAVLRA 310
A S PPPA S P GRA G RA
Sbjct: 74 CSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRA 115
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 32.0 bits (71), Expect = 0.94
Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 212 QPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCW 271
Q PA+ + A+ ++SSV + SL PAP PP P L P GR W
Sbjct: 19 QQPALWPTLAALALLSSVAE--ASLGSAPRSPAPREGPP---PVLASPAGHLPGGRTARW 73
Query: 272 VP-HAYSDRSSSSLHLLPPPAASSLFP--GRARAPGRAVLRA 310
A S PPPA S P GRA G RA
Sbjct: 74 CSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRA 115
>gi|194294543 alpha 3 type IV collagen binding protein isoform 3
[Homo sapiens]
Length = 752
Score = 32.0 bits (71), Expect = 0.94
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 211 TQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPP---------LPSPSLLRPRP 261
T P S P + +++ + +S G +G A + LPSP +L PR
Sbjct: 8 TPPSPFSAPPAFLPVVTRESRRGLSSGGSAGRNAGVTATAAAADGWKGRLPSPLVLLPRS 67
Query: 262 SSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAP 303
+ C+ R + +SSL LLPP +LF + P
Sbjct: 68 ARCQARRR-------RGGRTSSLLLLPPTPERALFASPSPDP 102
>gi|26051266 potassium voltage-gated channel KQT-like protein 2
isoform d [Homo sapiens]
Length = 841
Score = 32.0 bits (71), Expect = 0.94
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 20/129 (15%)
Query: 168 SLKTERQHRSFYFKK----VALVIQSRSFGWQRGNCLKTKL-----AFKKGQTQPPAISQ 218
+LK + QHR +F+K A +IQS ++ + N +T L +++ T P SQ
Sbjct: 317 ALKVQEQHRQKHFEKRRNPAAGLIQS-AWRFYATNLSRTDLHSTWQYYERTVTVPMYSSQ 375
Query: 219 SP--GAMQIISSVLQTRV--SLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPH 274
+ GA ++I + Q + +L SG PP PSPS PR + +G+G P
Sbjct: 376 TQTYGASRLIPPLNQLELLRNLKSKSGLAFRKDPPPEPSPS---PRGVAAKGKGS---PQ 429
Query: 275 AYSDRSSSS 283
A + R S S
Sbjct: 430 AQTVRRSPS 438
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 31.6 bits (70), Expect = 1.2
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 209 GQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRG 268
G + PA+ + A+ ++SSV + SL PAP PP P L P GR
Sbjct: 33 GLSAQPALWPTLAALALLSSVAE--ASLGSAPRSPAPREGPP---PVLASPAGHLPGGRT 87
Query: 269 QCWVP-HAYSDRSSSSLHLLPPPAASSLFP--GRARAPGRAVLRA 310
W A S PPPA S P GRA G RA
Sbjct: 88 ARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRA 132
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 31.6 bits (70), Expect = 1.2
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 209 GQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRG 268
G + PA+ + A+ ++SSV + SL PAP PP P L P GR
Sbjct: 24 GLSAQPALWPTLAALALLSSVAE--ASLGSAPRSPAPREGPP---PVLASPAGHLPGGRT 78
Query: 269 QCWVP-HAYSDRSSSSLHLLPPPAASSLFP--GRARAPGRAVLRA 310
W A S PPPA S P GRA G RA
Sbjct: 79 ARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRA 123
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 31.6 bits (70), Expect = 1.2
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 209 GQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRG 268
G + PA+ + A+ ++SSV + SL PAP PP P L P GR
Sbjct: 24 GLSAQPALWPTLAALALLSSVAE--ASLGSAPRSPAPREGPP---PVLASPAGHLPGGRT 78
Query: 269 QCWVP-HAYSDRSSSSLHLLPPPAASSLFP--GRARAPGRAVLRA 310
W A S PPPA S P GRA G RA
Sbjct: 79 ARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSRA 123
>gi|14249590 maelstrom homolog [Homo sapiens]
Length = 434
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQEKETQNGR 119
+P A+ N +Y+ +I E G P A C +W+LL+ +EK + R
Sbjct: 1 MPNRKASRNAYYFFVQEKIPELRRRGLPVARVADAIPYCSSDWALLREEEKEKYAEMAR 59
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 31.2 bits (69), Expect = 1.6
Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 31/138 (22%)
Query: 172 ERQHRSFYFKKVALVIQSRSFGWQRGNCLKTKLAFKKGQTQPPAISQSPGA-MQIISSVL 230
+++H + ++ AL I + S G G +PPA+S +P + + +S
Sbjct: 63 KKRHERLFHRQDALWISTSSAG--------------TGGAEPPALSPAPASPARPVSPAP 108
Query: 231 QTRVSLC----------GCSGHPAPASFPP------LPSPSLLRPRPSSCRGRGQCWVPH 274
R+SL G S P P P L SPS P P G G
Sbjct: 109 GRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRAGGGIPGSSS 168
Query: 275 AYSDRSSSSLHLLPPPAA 292
+ S L + PPP A
Sbjct: 169 PHPGTGSRRLKVAPPPPA 186
>gi|169194701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 31.2 bits (69), Expect = 1.6
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 239 CSGHPAPASFPPLPSPSLLRPR-----PSSCRGRGQCWVPHAYSDRSSSSLHLLP---PP 290
CSG AP+ FP L + RPR P S GR + P A SSS LP PP
Sbjct: 31 CSGGHAPSGFPALGLRTAQRPRPFSSSPRSASGRLRGPRPVARGPAHSSSPTGLPAYLPP 90
Query: 291 AAS 293
AA+
Sbjct: 91 AAA 93
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,108,288
Number of Sequences: 37866
Number of extensions: 973819
Number of successful extensions: 4398
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 4299
Number of HSP's gapped (non-prelim): 232
length of query: 379
length of database: 18,247,518
effective HSP length: 104
effective length of query: 275
effective length of database: 14,309,454
effective search space: 3935099850
effective search space used: 3935099850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.