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Search of human proteins with 239753906
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753906 PREDICTED: hypothetical protein [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753906 PREDICTED: hypothetical protein [Homo sapiens] 263 4e-71
gi|239748450 PREDICTED: hypothetical protein [Homo sapiens] 263 4e-71
gi|239742411 PREDICTED: hypothetical protein XP_002342509 [Homo ... 263 4e-71
gi|239753701 PREDICTED: hypothetical protein [Homo sapiens] 74 2e-14
gi|239748275 PREDICTED: hypothetical protein XP_002346602 [Homo ... 74 2e-14
gi|239742176 PREDICTED: hypothetical protein XP_002342444 [Homo ... 74 2e-14
gi|239755308 PREDICTED: hypothetical protein [Homo sapiens] 73 5e-14
gi|239749801 PREDICTED: hypothetical protein [Homo sapiens] 73 5e-14
gi|239744092 PREDICTED: hypothetical protein XP_002343030 [Homo ... 73 5e-14
gi|239756499 PREDICTED: hypothetical protein [Homo sapiens] 54 3e-08
gi|239745442 PREDICTED: hypothetical protein XP_002343468 [Homo ... 54 3e-08
gi|61742786 leucine rich repeat and death domain containing prot... 32 0.18
gi|61742784 leucine rich repeat and death domain containing prot... 32 0.18
gi|61742782 leucine rich repeat and death domain containing prot... 32 0.18
gi|126032348 hect domain and RLD 2 [Homo sapiens] 30 0.40
gi|188528658 transmembrane protein 182 [Homo sapiens] 28 2.0
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 26 9.9
>gi|239753906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 263 bits (671), Expect = 4e-71
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVL 60
MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVL
Sbjct: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVL 60
Query: 61 LTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGASFME 120
LTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGASFME
Sbjct: 61 LTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGASFME 120
Query: 121 LKIKFTLTN 129
LKIKFTLTN
Sbjct: 121 LKIKFTLTN 129
>gi|239748450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 263 bits (671), Expect = 4e-71
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVL 60
MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVL
Sbjct: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVL 60
Query: 61 LTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGASFME 120
LTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGASFME
Sbjct: 61 LTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGASFME 120
Query: 121 LKIKFTLTN 129
LKIKFTLTN
Sbjct: 121 LKIKFTLTN 129
>gi|239742411 PREDICTED: hypothetical protein XP_002342509 [Homo
sapiens]
Length = 129
Score = 263 bits (671), Expect = 4e-71
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVL 60
MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVL
Sbjct: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVL 60
Query: 61 LTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGASFME 120
LTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGASFME
Sbjct: 61 LTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGASFME 120
Query: 121 LKIKFTLTN 129
LKIKFTLTN
Sbjct: 121 LKIKFTLTN 129
>gi|239753701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 74.3 bits (181), Expect = 2e-14
Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 16 EFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVLLTSGVKLQTFAVSVT 75
EFLP G SGVK +TFA SVT K EL +PPGGFV VKLQTFAVSVT
Sbjct: 4 EFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFV------VKLQTFAVSVT 57
Query: 76 AHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGA 116
AHKG+ + + + +K+++ + P+R RGA
Sbjct: 58 AHKGSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGA 98
>gi|239748275 PREDICTED: hypothetical protein XP_002346602 [Homo
sapiens]
Length = 176
Score = 74.3 bits (181), Expect = 2e-14
Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 16 EFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVLLTSGVKLQTFAVSVT 75
EFLP G SGVK +TFA SVT K EL +PPGGFV VKLQTFAVSVT
Sbjct: 4 EFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFV------VKLQTFAVSVT 57
Query: 76 AHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGA 116
AHKG+ + + + +K+++ + P+R RGA
Sbjct: 58 AHKGSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGA 98
>gi|239742176 PREDICTED: hypothetical protein XP_002342444 [Homo
sapiens]
Length = 176
Score = 74.3 bits (181), Expect = 2e-14
Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 16 EFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFVVLLTSGVKLQTFAVSVT 75
EFLP G SGVK +TFA SVT K EL +PPGGFV VKLQTFAVSVT
Sbjct: 4 EFLPSGGLRGLAGSGVKPRTFAASVTAPKAAHLELFVPPGGFV------VKLQTFAVSVT 57
Query: 76 AHKGAWTQRVSSSKIYCEELKKKTPTTRNGTPARCRCWRGA 116
AHKG+ + + + +K+++ + P+R RGA
Sbjct: 58 AHKGSVDPKSEQQQDLLQRVKEQSSHSVEWDPSRLPLLRGA 98
>gi|239755308 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 73.2 bits (178), Expect = 5e-14
Identities = 37/51 (72%), Positives = 39/51 (76%)
Query: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELV 51
MVC EFVP DVR EFLP GF+VSLTS VKLQTFAVSVT HKGG +V
Sbjct: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVV 51
>gi|239749801 PREDICTED: hypothetical protein [Homo sapiens]
Length = 77
Score = 73.2 bits (178), Expect = 5e-14
Identities = 37/51 (72%), Positives = 39/51 (76%)
Query: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELV 51
MVC EFVP DVR EFLP GF+VSLTS VKLQTFAVSVT HKGG +V
Sbjct: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVV 51
>gi|239744092 PREDICTED: hypothetical protein XP_002343030 [Homo
sapiens]
Length = 77
Score = 73.2 bits (178), Expect = 5e-14
Identities = 37/51 (72%), Positives = 39/51 (76%)
Query: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELV 51
MVC EFVP DVR EFLP GF+VSLTS VKLQTFAVSVT HKGG +V
Sbjct: 1 MVCPEFVPFDVRTCAEFLPSGGFLVSLTSRVKLQTFAVSVTAHKGGPSRVV 51
>gi|239756499 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 54.3 bits (129), Expect = 3e-08
Identities = 29/44 (65%), Positives = 31/44 (70%)
Query: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHK 44
MV FVPSDV+ PEFLP FVVSLTS KLQ F+ SVT HK
Sbjct: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHK 44
>gi|239745442 PREDICTED: hypothetical protein XP_002343468 [Homo
sapiens]
Length = 110
Score = 54.3 bits (129), Expect = 3e-08
Identities = 29/44 (65%), Positives = 31/44 (70%)
Query: 1 MVCLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHK 44
MV FVPSDV+ PEFLP FVVSLTS KLQ F+ SVT HK
Sbjct: 1 MVGPGFVPSDVQMYPEFLPSGEFVVSLTSRGKLQNFSASVTAHK 44
>gi|61742786 leucine rich repeat and death domain containing protein
isoform 3 [Homo sapiens]
Length = 893
Score = 31.6 bits (70), Expect = 0.18
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 6 FVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFV------V 59
F+ SD+ + P + P G V+L GV+LQ A + R L++P G V
Sbjct: 318 FLTSDLDSFP--VTPQGCSVTLACGVRLQFPAGATATPITIRYRLLLPEPGLVPLGPHDA 375
Query: 60 LLTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKT 99
LL+ ++LQ V+ G W C E+ +T
Sbjct: 376 LLSHVLELQPHGVAFQQDVGLWLLFTPPQARRCREVVVRT 415
>gi|61742784 leucine rich repeat and death domain containing protein
isoform 1 [Homo sapiens]
Length = 910
Score = 31.6 bits (70), Expect = 0.18
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 6 FVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFV------V 59
F+ SD+ + P + P G V+L GV+LQ A + R L++P G V
Sbjct: 318 FLTSDLDSFP--VTPQGCSVTLACGVRLQFPAGATATPITIRYRLLLPEPGLVPLGPHDA 375
Query: 60 LLTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKT 99
LL+ ++LQ V+ G W C E+ +T
Sbjct: 376 LLSHVLELQPHGVAFQQDVGLWLLFTPPQARRCREVVVRT 415
>gi|61742782 leucine rich repeat and death domain containing protein
isoform 2 [Homo sapiens]
Length = 753
Score = 31.6 bits (70), Expect = 0.18
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 6 FVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVHKGGRPELVIPPGGFV------V 59
F+ SD+ + P + P G V+L GV+LQ A + R L++P G V
Sbjct: 172 FLTSDLDSFP--VTPQGCSVTLACGVRLQFPAGATATPITIRYRLLLPEPGLVPLGPHDA 229
Query: 60 LLTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKT 99
LL+ ++LQ V+ G W C E+ +T
Sbjct: 230 LLSHVLELQPHGVAFQQDVGLWLLFTPPQARRCREVVVRT 269
>gi|126032348 hect domain and RLD 2 [Homo sapiens]
Length = 4834
Score = 30.4 bits (67), Expect = 0.40
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 44 KGGRPELVIPPGGFVVLLTSGVKLQTFAVSVTAHKGAWTQRVSSSKIYCEELKKKTPTTR 103
+GG+ L P +V L ++L T HK AW +R + L K+TP R
Sbjct: 3836 RGGKQLLHSPFFKVLVALACDLELDTLPCCAETHKWAWFRRYCMASRVAVALDKRTPLPR 3895
>gi|188528658 transmembrane protein 182 [Homo sapiens]
Length = 229
Score = 28.1 bits (61), Expect = 2.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 3 CLEFVPSDVRASPEFLPPSGFVVSLTSGVKLQTFAVSVTVH 43
CL+F PS + FL P+G SL +G+ + +H
Sbjct: 188 CLDFTPSVLYGWSFFLAPAGIFFSLLAGLLFLVVGWHIQIH 228
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 25.8 bits (55), Expect = 9.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 103 RNGTPARCRCWRGASF 118
RNG+ ARCRC R +F
Sbjct: 2505 RNGSHARCRCSRTGTF 2520
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,477,139
Number of Sequences: 37866
Number of extensions: 234834
Number of successful extensions: 443
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 22
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.