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Search of human proteins with 239753813
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753813 PREDICTED: similar to dynein, light chain,
Tctex-type 1 [Homo sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-ty... 239 3e-64
gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo ... 239 3e-64
gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo ... 239 3e-64
gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens] 189 5e-49
gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens] 118 1e-27
gi|229090471 Tctex1 domain containing 2 [Homo sapiens] 54 3e-08
gi|61966721 Tctex1 domain containing 4 [Homo sapiens] 36 0.006
gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [H... 36 0.007
gi|239735600 Tctex1 domain containing 1 [Homo sapiens] 32 0.11
gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens] 31 0.18
gi|93352549 DnaJ (Hsp40) homolog, subfamily C, member 28 [Homo s... 29 0.91
gi|40254908 DnaJ (Hsp40) homolog, subfamily C, member 28 [Homo s... 29 0.91
gi|37059814 ETAA16 protein [Homo sapiens] 29 0.91
gi|21361914 semaphorin B [Homo sapiens] 28 1.2
gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens] 28 1.6
gi|154146189 dedicator of cytokinesis 10 [Homo sapiens] 27 2.7
gi|31317295 calcium-activated potassium channel beta 2 subunit [... 27 3.5
gi|5031823 calcium-activated potassium channel beta 2 subunit [H... 27 3.5
gi|5454090 signal sequence receptor, delta [Homo sapiens] 27 4.5
>gi|239753813 PREDICTED: similar to dynein, light chain, Tctex-type
1 [Homo sapiens]
Length = 116
Score = 239 bits (610), Expect = 3e-64
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MGDYQAVEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKL 60
MGDYQAVEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKL
Sbjct: 1 MGDYQAVEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKL 60
Query: 61 GKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
GKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI
Sbjct: 61 GKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
>gi|239748376 PREDICTED: hypothetical protein XP_002346645 [Homo
sapiens]
Length = 116
Score = 239 bits (610), Expect = 3e-64
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MGDYQAVEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKL 60
MGDYQAVEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKL
Sbjct: 1 MGDYQAVEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKL 60
Query: 61 GKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
GKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI
Sbjct: 61 GKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
>gi|239742301 PREDICTED: hypothetical protein XP_002342481 [Homo
sapiens]
Length = 116
Score = 239 bits (610), Expect = 3e-64
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MGDYQAVEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKL 60
MGDYQAVEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKL
Sbjct: 1 MGDYQAVEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKL 60
Query: 61 GKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
GKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI
Sbjct: 61 GKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
>gi|5730085 dynein, light chain, Tctex-type 1 [Homo sapiens]
Length = 113
Score = 189 bits (479), Expect = 5e-49
Identities = 99/118 (83%), Positives = 102/118 (86%), Gaps = 7/118 (5%)
Query: 1 MGDYQAVEETAFIV-EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNV-EQTLSQLP 58
M DYQA EETAF+V EVSN VKEAIES IG GNAYQHSKVNQWTTNV EQTLSQL
Sbjct: 1 MEDYQAAEETAFVVDEVSNIVKEAIESAIG-----GNAYQHSKVNQWTTNVVEQTLSQLT 55
Query: 59 KLGKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
KLGKPFKYIVTCVI+QKNGAG + ASSCFWDSSTDGS TVRWENKTMYCIV AFGLSI
Sbjct: 56 KLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 113
>gi|5730087 dynein, light chain, Tctex-type 3 [Homo sapiens]
Length = 116
Score = 118 bits (295), Expect = 1e-27
Identities = 54/103 (52%), Positives = 74/103 (71%), Gaps = 6/103 (5%)
Query: 15 EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTN-VEQTLSQLPKLGKPFKYIVTCVII 73
E N VKE ++ V+G G Y H+ +NQWT + VEQ+L+ L KLGK +KYIVTC ++
Sbjct: 17 EAHNIVKECVDGVLG-----GEDYNHNNINQWTASIVEQSLTHLVKLGKAYKYIVTCAVV 71
Query: 74 QKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGLSI 116
QK+ G + ASSCFWD+++DG+ TVRWEN+TM CIV F ++I
Sbjct: 72 QKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAI 114
>gi|229090471 Tctex1 domain containing 2 [Homo sapiens]
Length = 142
Score = 53.5 bits (127), Expect = 3e-08
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 18 NTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLS-QLPKLG-KPFKYIVTCVIIQK 75
+ VK+ I +V+ + Y ++ Q T ++ + + +L ++G +K +V VI ++
Sbjct: 42 SVVKDCIHAVLKE-ELANAEYSPEEMPQLTKHLSENIKDKLKEMGFDRYKMVVQVVIGEQ 100
Query: 76 NGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFG 113
G G +MAS CFWD+ TD + N +++C+V AFG
Sbjct: 101 RGEGVFMASRCFWDADTDNYTHDVFMNDSLFCVVAAFG 138
>gi|61966721 Tctex1 domain containing 4 [Homo sapiens]
Length = 221
Score = 36.2 bits (82), Expect = 0.006
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 21 KEAIESVIGAGRVGGNAYQHSKVNQWTTNV-EQTLSQLPKLGKP-FKYIVTCVIIQKNGA 78
+ A+E+ + AG + Y + + + EQ +L +L P +K + + V+ + G
Sbjct: 124 QRALEAALAAG-LHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKLVCSVVLGPRAGQ 182
Query: 79 GSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGL 114
G ++ S WD + DG +V + N +++ + GL
Sbjct: 183 GVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGL 218
>gi|169160677 PREDICTED: similar to Tctex1 domain containing 4 [Homo
sapiens]
Length = 127
Score = 35.8 bits (81), Expect = 0.007
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 51 EQTLSQLPKLGKP-FKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIV 109
EQ +L +L P +K + + V+ + G G ++ S WD + DG +V + N +++ +
Sbjct: 60 EQVHVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVA 119
Query: 110 GAFGL 114
GL
Sbjct: 120 TVHGL 124
>gi|239735600 Tctex1 domain containing 1 [Homo sapiens]
Length = 179
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 13 IVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTL-SQLPKLGKP-FKYIVTC 70
+V V++ +K+ + S + Y+ Q T + + + +Q+ L P +K IV
Sbjct: 78 VVTVNHILKDVVTSYLQV-----EEYEPELCRQMTKTISEVIKAQVKDLMIPRYKLIVIV 132
Query: 71 VIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGL 114
I Q N + S C WD +D + + N +++ + + +
Sbjct: 133 HIGQLNRQSILIGSRCLWDPKSDTFSSYVFRNSSLFALANVYAV 176
>gi|28372535 t-complex-associated-testis-expressed 3 [Homo sapiens]
Length = 198
Score = 31.2 bits (69), Expect = 0.18
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 64 FKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIVGAFGL 114
+K+I+ + IQK G +AS WD + D + E ++ +V F L
Sbjct: 145 YKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFAL 195
>gi|93352549 DnaJ (Hsp40) homolog, subfamily C, member 28 [Homo
sapiens]
Length = 388
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 15 EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKLGK---PFKYIVTCV 71
E+S+T+++ E+++ + + GN ++ QW EQ + KL K F IV +
Sbjct: 262 EISDTIEQLREAILVSRKKLGNPMTPTEKKQWNHVCEQFQENIRKLNKRINDFNLIVPIL 321
Query: 72 IIQK 75
QK
Sbjct: 322 TRQK 325
>gi|40254908 DnaJ (Hsp40) homolog, subfamily C, member 28 [Homo
sapiens]
Length = 388
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 15 EVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKLGK---PFKYIVTCV 71
E+S+T+++ E+++ + + GN ++ QW EQ + KL K F IV +
Sbjct: 262 EISDTIEQLREAILVSRKKLGNPMTPTEKKQWNHVCEQFQENIRKLNKRINDFNLIVPIL 321
Query: 72 IIQK 75
QK
Sbjct: 322 TRQK 325
>gi|37059814 ETAA16 protein [Homo sapiens]
Length = 926
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 13 IVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKLGKPFK 65
I E++N + +++ + G N Q +N + +V+ +L+ ++ KP K
Sbjct: 665 ICEINNNSEHGAKNMFAISKQGSNLVQSKHLNPGSISVQTSLTNSSQIDKPMK 717
>gi|21361914 semaphorin B [Homo sapiens]
Length = 761
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 11 AFIVEVSNTVKEAIESVIGAGRVGG--------NAYQHSKVNQWTTNVEQTLSQLPKLGK 62
A + E S+TV +I VGG N + + ++ W + +QTL+ P+L
Sbjct: 596 AAVPEASSTVYNGSLLLIVQDGVGGLYQCWATENGFSYPVISYWVDSQDQTLALDPELAG 655
Query: 63 PFKYIVTCVIIQKNGAGSYMASSCFW 88
+ V + + +G + A +W
Sbjct: 656 IPREHVKVPLTRVSGGAALAAQQSYW 681
>gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]
Length = 1512
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 7 VEETAFIVEVSNTVKEAIESVIGAGRVGGNAYQHSKVNQWTTNVEQTLSQLPKLGKPFKY 66
V E +V++ ++ AG G N +H++++ W LS
Sbjct: 42 VSENVIFTDVNSILRYLARVATTAGLYGSNLMEHTEIDHWLEFSATKLSSCDSFTSTINE 101
Query: 67 IVTCVIIQKNGAGS--YMASSCFW 88
+ C+ ++ G+ +A C W
Sbjct: 102 LNHCLSLRTYLVGNSLSLADLCVW 125
>gi|154146189 dedicator of cytokinesis 10 [Homo sapiens]
Length = 2186
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 51 EQTLSQLPKLGKPFKYIVTCVIIQKNGAGSYMASSCFWDSSTDGSYTVRWENKTMYCIV 109
+Q + P+L +P Y ++K + F+ S + TV W+ +T+Y V
Sbjct: 38 QQQRQEKPRLLEPLDYETVIEELEKTYRNDPLQDLLFFPSDDFSAATVSWDIRTLYSTV 96
>gi|31317295 calcium-activated potassium channel beta 2 subunit
[Homo sapiens]
Length = 235
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 47 TTNVEQTLSQLPKLGKPFKYIVTCVIIQKNGAGSYMASSCFWD 89
T + Q S +PK GK F+ ++ V + Y SC+ D
Sbjct: 135 TIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSD 177
>gi|5031823 calcium-activated potassium channel beta 2 subunit [Homo
sapiens]
Length = 235
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 47 TTNVEQTLSQLPKLGKPFKYIVTCVIIQKNGAGSYMASSCFWD 89
T + Q S +PK GK F+ ++ V + Y SC+ D
Sbjct: 135 TIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSD 177
>gi|5454090 signal sequence receptor, delta [Homo sapiens]
Length = 173
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 9 ETAFIVEVSNTVKEAIESVIGAGRVGGNAY 38
ET FIVE+S T K ++++ VGG +
Sbjct: 46 ETVFIVEISLTCKNRVQNMALYADVGGKQF 75
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,054,826
Number of Sequences: 37866
Number of extensions: 150740
Number of successful extensions: 311
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 20
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.