Guide to the Human Genome
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Search of human proteins with 239753604

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753604 PREDICTED: hypothetical protein [Homo sapiens]
         (126 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753604 PREDICTED: hypothetical protein [Homo sapiens]           249   3e-67
gi|239748182 PREDICTED: hypothetical protein [Homo sapiens]           249   3e-67
gi|239742076 PREDICTED: hypothetical protein XP_002342430 [Homo ...   249   3e-67
gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens]               41   3e-04
gi|29126241 ferritin mitochondrial [Homo sapiens]                      38   0.002
gi|20149498 ferritin, light polypeptide [Homo sapiens]                 34   0.034
gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens]           34   0.034
gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens]           34   0.034
gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo sap...    34   0.034
gi|221316586 BSD domain containing 1 isoform d [Homo sapiens]          30   0.64 
gi|221316584 BSD domain containing 1 isoform c [Homo sapiens]          30   0.64 
gi|221316581 BSD domain containing 1 isoform a [Homo sapiens]          30   0.64 
gi|221316578 BSD domain containing 1 isoform b [Homo sapiens]          30   0.64 
gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens]         30   0.64 
gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo sap...    29   0.83 
gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sap...    29   0.83 
gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sap...    29   0.83 
gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo sap...    29   0.83 
gi|77874206 poly(A) polymerase beta (testis specific) [Homo sapi...    29   0.83 
gi|32490557 poly(A) polymerase alpha [Homo sapiens]                    29   1.1  
gi|50312666 ubiquitin specific peptidase 25 [Homo sapiens]             28   2.4  
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform...    28   2.4  
gi|41322923 plectin 1 isoform 11 [Homo sapiens]                        28   2.4  
gi|41322914 plectin 1 isoform 10 [Homo sapiens]                        28   2.4  
gi|41322919 plectin 1 isoform 8 [Homo sapiens]                         28   2.4  
gi|41322910 plectin 1 isoform 7 [Homo sapiens]                         28   2.4  
gi|41322916 plectin 1 isoform 6 [Homo sapiens]                         28   2.4  
gi|41322908 plectin 1 isoform 3 [Homo sapiens]                         28   2.4  
gi|41322912 plectin 1 isoform 2 [Homo sapiens]                         28   2.4  
gi|47607492 plectin 1 isoform 1 [Homo sapiens]                         28   2.4  

>gi|239753604 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 126

 Score =  249 bits (637), Expect = 3e-67
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60
           MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN
Sbjct: 1   MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60

Query: 61  VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120
           VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE
Sbjct: 61  VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120

Query: 121 TSVEET 126
           TSVEET
Sbjct: 121 TSVEET 126


>gi|239748182 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 126

 Score =  249 bits (637), Expect = 3e-67
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60
           MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN
Sbjct: 1   MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60

Query: 61  VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120
           VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE
Sbjct: 61  VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120

Query: 121 TSVEET 126
           TSVEET
Sbjct: 121 TSVEET 126


>gi|239742076 PREDICTED: hypothetical protein XP_002342430 [Homo
           sapiens]
          Length = 126

 Score =  249 bits (637), Expect = 3e-67
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60
           MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN
Sbjct: 1   MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60

Query: 61  VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120
           VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE
Sbjct: 61  VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120

Query: 121 TSVEET 126
           TSVEET
Sbjct: 121 TSVEET 126


>gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens]
          Length = 183

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 35  RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVK-EFIDKQTASIA 93
           +P+ D+W +GL A++ A+ LE  +   L +L   AT  ++  L DF++  ++++Q  +I 
Sbjct: 88  KPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIK 147

Query: 94  FLEYH-QKLLEESLQQKGLSE 113
            L  H   L +    + GL+E
Sbjct: 148 ELGDHVTNLRKMGAPESGLAE 168


>gi|29126241 ferritin mitochondrial [Homo sapiens]
          Length = 242

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 35  RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVKE-FIDKQTASIA 93
           +P  D+W +GL A++ A+ LE  +   L +L   A+   +  L DF++  ++++Q  SI 
Sbjct: 147 KPEQDDWESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIK 206

Query: 94  FLEYH-QKLLEESLQQKGLSE 113
            L  H   L++      GL+E
Sbjct: 207 ELGDHVHNLVKMGAPDAGLAE 227


>gi|20149498 ferritin, light polypeptide [Homo sapiens]
          Length = 175

 Score = 33.9 bits (76), Expect = 0.034
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 35  RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVK-EFIDKQTASIA 93
           +P  D WG    A+K A+ LE  L   L DL    +   +  L DF++  F+D++   I 
Sbjct: 84  KPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIK 143

Query: 94  FLEYH 98
            +  H
Sbjct: 144 KMGDH 148


>gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens]
          Length = 213

 Score = 33.9 bits (76), Expect = 0.034
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 50/140 (35%)

Query: 3   YEIHGPFSEECGVAINRVASYELHISDAYLSM---------------------------- 34
           +++   +  +C  A+N   + ELH S  YLSM                            
Sbjct: 49  WQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREH 108

Query: 35  ---------------------RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDD 73
                                +P  + W +GLQA++ A  LE ++   L +L   A +  
Sbjct: 109 AQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKG 168

Query: 74  ETGLIDFVK-EFIDKQTASI 92
           +  L DF++  F+++Q  +I
Sbjct: 169 DPQLCDFLESHFLNQQVKAI 188


>gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens]
          Length = 213

 Score = 33.9 bits (76), Expect = 0.034
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 50/140 (35%)

Query: 3   YEIHGPFSEECGVAINRVASYELHISDAYLSM---------------------------- 34
           +++   +  +C  A+N   + ELH S  YLSM                            
Sbjct: 49  WQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREH 108

Query: 35  ---------------------RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDD 73
                                +P  + W +GLQA++ A  LE ++   L +L   A +  
Sbjct: 109 AQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKG 168

Query: 74  ETGLIDFVK-EFIDKQTASI 92
           +  L DF++  F+++Q  +I
Sbjct: 169 DPQLCDFLESHFLNQQVKAI 188


>gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo
           sapiens]
          Length = 213

 Score = 33.9 bits (76), Expect = 0.034
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 50/140 (35%)

Query: 3   YEIHGPFSEECGVAINRVASYELHISDAYLSM---------------------------- 34
           +++   +  +C  A+N   + ELH S  YLSM                            
Sbjct: 49  WQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREH 108

Query: 35  ---------------------RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDD 73
                                +P  + W +GLQA++ A  LE ++   L +L   A +  
Sbjct: 109 AQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKG 168

Query: 74  ETGLIDFVK-EFIDKQTASI 92
           +  L DF++  F+++Q  +I
Sbjct: 169 DPQLCDFLESHFLNQQVKAI 188


>gi|221316586 BSD domain containing 1 isoform d [Homo sapiens]
          Length = 335

 Score = 29.6 bits (65), Expect = 0.64
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 55  ENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFL---EYHQKLLEESLQQKGL 111
           EN +T+V    ++T ++  E+  I  V +  +  TA  A +   +  QKLLE SL+++GL
Sbjct: 167 ENLVTSVEPPAEVTPSESSES--ISLVTQIANPATAPEARVLPKDLSQKLLEASLEEQGL 224

Query: 112 SEKSAES 118
           +    E+
Sbjct: 225 AVDVGET 231


>gi|221316584 BSD domain containing 1 isoform c [Homo sapiens]
          Length = 374

 Score = 29.6 bits (65), Expect = 0.64
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 55  ENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFL---EYHQKLLEESLQQKGL 111
           EN +T+V    ++T ++  E+  I  V +  +  TA  A +   +  QKLLE SL+++GL
Sbjct: 206 ENLVTSVEPPAEVTPSESSES--ISLVTQIANPATAPEARVLPKDLSQKLLEASLEEQGL 263

Query: 112 SEKSAES 118
           +    E+
Sbjct: 264 AVDVGET 270


>gi|221316581 BSD domain containing 1 isoform a [Homo sapiens]
          Length = 447

 Score = 29.6 bits (65), Expect = 0.64
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 55  ENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFL---EYHQKLLEESLQQKGL 111
           EN +T+V    ++T ++  E+  I  V +  +  TA  A +   +  QKLLE SL+++GL
Sbjct: 279 ENLVTSVEPPAEVTPSESSES--ISLVTQIANPATAPEARVLPKDLSQKLLEASLEEQGL 336

Query: 112 SEKSAES 118
           +    E+
Sbjct: 337 AVDVGET 343


>gi|221316578 BSD domain containing 1 isoform b [Homo sapiens]
          Length = 430

 Score = 29.6 bits (65), Expect = 0.64
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 55  ENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFL---EYHQKLLEESLQQKGL 111
           EN +T+V    ++T ++  E+  I  V +  +  TA  A +   +  QKLLE SL+++GL
Sbjct: 262 ENLVTSVEPPAEVTPSESSES--ISLVTQIANPATAPEARVLPKDLSQKLLEASLEEQGL 319

Query: 112 SEKSAES 118
           +    E+
Sbjct: 320 AVDVGET 326


>gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens]
          Length = 183

 Score = 29.6 bits (65), Expect = 0.64
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 35  RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVK-EFIDKQTASIA 93
           +P    W +GL A++ A  LE  +   L DL   A +  +  L  F++  ++ +Q  +I 
Sbjct: 88  KPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIK 147

Query: 94  FL-EYHQKLLEESLQQKGLSE 113
            L  Y   L +    + GL+E
Sbjct: 148 ELGGYVSNLRKICSPEAGLAE 168


>gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo
           sapiens]
          Length = 436

 Score = 29.3 bits (64), Expect = 0.83
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 14/83 (16%)

Query: 45  LQALKFAVQLENTLTNVLQDLKITATK---DDETGLIDFVKEF----------IDKQTAS 91
           L++LK  ++++N   +  QD+K+   +   D+ T L+D +K F          +DK  A 
Sbjct: 306 LESLKAVLEIKNEKLHQ-QDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAI 364

Query: 92  IAFLEYHQKLLEESLQQKGLSEK 114
              L   Q +L+ESL+++    K
Sbjct: 365 SRQLSTEQAVLQESLEKESKVNK 387


>gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sapiens]
          Length = 1270

 Score = 29.3 bits (64), Expect = 0.83
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 14/83 (16%)

Query: 45   LQALKFAVQLENTLTNVLQDLKITATK---DDETGLIDFVKEF----------IDKQTAS 91
            L++LK  ++++N   +  QD+K+   +   D+ T L+D +K F          +DK  A 
Sbjct: 1140 LESLKAVLEIKNEKLHQ-QDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAI 1198

Query: 92   IAFLEYHQKLLEESLQQKGLSEK 114
               L   Q +L+ESL+++    K
Sbjct: 1199 SRQLSTEQAVLQESLEKESKVNK 1221


>gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sapiens]
          Length = 1216

 Score = 29.3 bits (64), Expect = 0.83
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 14/83 (16%)

Query: 45   LQALKFAVQLENTLTNVLQDLKITATK---DDETGLIDFVKEF----------IDKQTAS 91
            L++LK  ++++N   +  QD+K+   +   D+ T L+D +K F          +DK  A 
Sbjct: 1086 LESLKAVLEIKNEKLHQ-QDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAI 1144

Query: 92   IAFLEYHQKLLEESLQQKGLSEK 114
               L   Q +L+ESL+++    K
Sbjct: 1145 SRQLSTEQAVLQESLEKESKVNK 1167


>gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo
           sapiens]
          Length = 517

 Score = 29.3 bits (64), Expect = 0.83
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 14/83 (16%)

Query: 45  LQALKFAVQLENTLTNVLQDLKITATK---DDETGLIDFVKEF----------IDKQTAS 91
           L++LK  ++++N   +  QD+K+   +   D+ T L+D +K F          +DK  A 
Sbjct: 387 LESLKAVLEIKNEKLHQ-QDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAI 445

Query: 92  IAFLEYHQKLLEESLQQKGLSEK 114
              L   Q +L+ESL+++    K
Sbjct: 446 SRQLSTEQAVLQESLEKESKVNK 468


>gi|77874206 poly(A) polymerase beta (testis specific) [Homo
           sapiens]
          Length = 637

 Score = 29.3 bits (64), Expect = 0.83
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 27  ISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTNVL 62
           ++D  L + PNIDN+   L+A+K   +  N  +N+L
Sbjct: 207 VTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNIL 242


>gi|32490557 poly(A) polymerase alpha [Homo sapiens]
          Length = 745

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 27  ISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTNVL 62
           ++D  L + PNIDN+   L+A+K   +  N  +N+L
Sbjct: 206 VTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNIL 241


>gi|50312666 ubiquitin specific peptidase 25 [Homo sapiens]
          Length = 1055

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 77  LIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSV 123
           L DFV+E  D Q       E+  +L +++LQ+K L+ +    +ETSV
Sbjct: 685 LRDFVEE--DNQRFEKELEEWDAQLAQKALQEKLLASQKLRESETSV 729


>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
           precursor [Homo sapiens]
          Length = 228

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 50  FAVQLENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEY 97
           F + +E T+ N   D K+T   DD   L+   KE ++  +  +  LE+
Sbjct: 76  FKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEF 123


>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
          Length = 4547

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 87   KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
            ++ A+ A +E H+K  E++L+QK   E+   +    +EET
Sbjct: 2159 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2198


>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
          Length = 4551

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 87   KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
            ++ A+ A +E H+K  E++L+QK   E+   +    +EET
Sbjct: 2163 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2202


>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
          Length = 4547

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 87   KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
            ++ A+ A +E H+K  E++L+QK   E+   +    +EET
Sbjct: 2159 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2198


>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
          Length = 4515

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 87   KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
            ++ A+ A +E H+K  E++L+QK   E+   +    +EET
Sbjct: 2127 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2166


>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
          Length = 4684

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 87   KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
            ++ A+ A +E H+K  E++L+QK   E+   +    +EET
Sbjct: 2296 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2335


>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
          Length = 4525

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 87   KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
            ++ A+ A +E H+K  E++L+QK   E+   +    +EET
Sbjct: 2137 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2176


>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
          Length = 4533

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 87   KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
            ++ A+ A +E H+K  E++L+QK   E+   +    +EET
Sbjct: 2145 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2184


>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
          Length = 4574

 Score = 27.7 bits (60), Expect = 2.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 87   KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
            ++ A+ A +E H+K  E++L+QK   E+   +    +EET
Sbjct: 2186 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2225


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.129    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,794,966
Number of Sequences: 37866
Number of extensions: 130557
Number of successful extensions: 475
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 42
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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