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Search of human proteins with 239753604
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753604 PREDICTED: hypothetical protein [Homo sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753604 PREDICTED: hypothetical protein [Homo sapiens] 249 3e-67
gi|239748182 PREDICTED: hypothetical protein [Homo sapiens] 249 3e-67
gi|239742076 PREDICTED: hypothetical protein XP_002342430 [Homo ... 249 3e-67
gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens] 41 3e-04
gi|29126241 ferritin mitochondrial [Homo sapiens] 38 0.002
gi|20149498 ferritin, light polypeptide [Homo sapiens] 34 0.034
gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens] 34 0.034
gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens] 34 0.034
gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo sap... 34 0.034
gi|221316586 BSD domain containing 1 isoform d [Homo sapiens] 30 0.64
gi|221316584 BSD domain containing 1 isoform c [Homo sapiens] 30 0.64
gi|221316581 BSD domain containing 1 isoform a [Homo sapiens] 30 0.64
gi|221316578 BSD domain containing 1 isoform b [Homo sapiens] 30 0.64
gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens] 30 0.64
gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo sap... 29 0.83
gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sap... 29 0.83
gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sap... 29 0.83
gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo sap... 29 0.83
gi|77874206 poly(A) polymerase beta (testis specific) [Homo sapi... 29 0.83
gi|32490557 poly(A) polymerase alpha [Homo sapiens] 29 1.1
gi|50312666 ubiquitin specific peptidase 25 [Homo sapiens] 28 2.4
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 28 2.4
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 28 2.4
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 28 2.4
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 28 2.4
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 28 2.4
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 28 2.4
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 28 2.4
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 28 2.4
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 28 2.4
>gi|239753604 PREDICTED: hypothetical protein [Homo sapiens]
Length = 126
Score = 249 bits (637), Expect = 3e-67
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60
MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN
Sbjct: 1 MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60
Query: 61 VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120
VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE
Sbjct: 61 VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120
Query: 121 TSVEET 126
TSVEET
Sbjct: 121 TSVEET 126
>gi|239748182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 126
Score = 249 bits (637), Expect = 3e-67
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60
MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN
Sbjct: 1 MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60
Query: 61 VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120
VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE
Sbjct: 61 VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120
Query: 121 TSVEET 126
TSVEET
Sbjct: 121 TSVEET 126
>gi|239742076 PREDICTED: hypothetical protein XP_002342430 [Homo
sapiens]
Length = 126
Score = 249 bits (637), Expect = 3e-67
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60
MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN
Sbjct: 1 MEYEIHGPFSEECGVAINRVASYELHISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTN 60
Query: 61 VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120
VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE
Sbjct: 61 VLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAE 120
Query: 121 TSVEET 126
TSVEET
Sbjct: 121 TSVEET 126
>gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens]
Length = 183
Score = 40.8 bits (94), Expect = 3e-04
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 35 RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVK-EFIDKQTASIA 93
+P+ D+W +GL A++ A+ LE + L +L AT ++ L DF++ ++++Q +I
Sbjct: 88 KPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIK 147
Query: 94 FLEYH-QKLLEESLQQKGLSE 113
L H L + + GL+E
Sbjct: 148 ELGDHVTNLRKMGAPESGLAE 168
>gi|29126241 ferritin mitochondrial [Homo sapiens]
Length = 242
Score = 37.7 bits (86), Expect = 0.002
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 35 RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVKE-FIDKQTASIA 93
+P D+W +GL A++ A+ LE + L +L A+ + L DF++ ++++Q SI
Sbjct: 147 KPEQDDWESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIK 206
Query: 94 FLEYH-QKLLEESLQQKGLSE 113
L H L++ GL+E
Sbjct: 207 ELGDHVHNLVKMGAPDAGLAE 227
>gi|20149498 ferritin, light polypeptide [Homo sapiens]
Length = 175
Score = 33.9 bits (76), Expect = 0.034
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 35 RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVK-EFIDKQTASIA 93
+P D WG A+K A+ LE L L DL + + L DF++ F+D++ I
Sbjct: 84 KPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIK 143
Query: 94 FLEYH 98
+ H
Sbjct: 144 KMGDH 148
>gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens]
Length = 213
Score = 33.9 bits (76), Expect = 0.034
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 50/140 (35%)
Query: 3 YEIHGPFSEECGVAINRVASYELHISDAYLSM---------------------------- 34
+++ + +C A+N + ELH S YLSM
Sbjct: 49 WQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREH 108
Query: 35 ---------------------RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDD 73
+P + W +GLQA++ A LE ++ L +L A +
Sbjct: 109 AQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKG 168
Query: 74 ETGLIDFVK-EFIDKQTASI 92
+ L DF++ F+++Q +I
Sbjct: 169 DPQLCDFLESHFLNQQVKAI 188
>gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens]
Length = 213
Score = 33.9 bits (76), Expect = 0.034
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 50/140 (35%)
Query: 3 YEIHGPFSEECGVAINRVASYELHISDAYLSM---------------------------- 34
+++ + +C A+N + ELH S YLSM
Sbjct: 49 WQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREH 108
Query: 35 ---------------------RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDD 73
+P + W +GLQA++ A LE ++ L +L A +
Sbjct: 109 AQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKG 168
Query: 74 ETGLIDFVK-EFIDKQTASI 92
+ L DF++ F+++Q +I
Sbjct: 169 DPQLCDFLESHFLNQQVKAI 188
>gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo
sapiens]
Length = 213
Score = 33.9 bits (76), Expect = 0.034
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 50/140 (35%)
Query: 3 YEIHGPFSEECGVAINRVASYELHISDAYLSM---------------------------- 34
+++ + +C A+N + ELH S YLSM
Sbjct: 49 WQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREH 108
Query: 35 ---------------------RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDD 73
+P + W +GLQA++ A LE ++ L +L A +
Sbjct: 109 AQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKG 168
Query: 74 ETGLIDFVK-EFIDKQTASI 92
+ L DF++ F+++Q +I
Sbjct: 169 DPQLCDFLESHFLNQQVKAI 188
>gi|221316586 BSD domain containing 1 isoform d [Homo sapiens]
Length = 335
Score = 29.6 bits (65), Expect = 0.64
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 55 ENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFL---EYHQKLLEESLQQKGL 111
EN +T+V ++T ++ E+ I V + + TA A + + QKLLE SL+++GL
Sbjct: 167 ENLVTSVEPPAEVTPSESSES--ISLVTQIANPATAPEARVLPKDLSQKLLEASLEEQGL 224
Query: 112 SEKSAES 118
+ E+
Sbjct: 225 AVDVGET 231
>gi|221316584 BSD domain containing 1 isoform c [Homo sapiens]
Length = 374
Score = 29.6 bits (65), Expect = 0.64
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 55 ENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFL---EYHQKLLEESLQQKGL 111
EN +T+V ++T ++ E+ I V + + TA A + + QKLLE SL+++GL
Sbjct: 206 ENLVTSVEPPAEVTPSESSES--ISLVTQIANPATAPEARVLPKDLSQKLLEASLEEQGL 263
Query: 112 SEKSAES 118
+ E+
Sbjct: 264 AVDVGET 270
>gi|221316581 BSD domain containing 1 isoform a [Homo sapiens]
Length = 447
Score = 29.6 bits (65), Expect = 0.64
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 55 ENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFL---EYHQKLLEESLQQKGL 111
EN +T+V ++T ++ E+ I V + + TA A + + QKLLE SL+++GL
Sbjct: 279 ENLVTSVEPPAEVTPSESSES--ISLVTQIANPATAPEARVLPKDLSQKLLEASLEEQGL 336
Query: 112 SEKSAES 118
+ E+
Sbjct: 337 AVDVGET 343
>gi|221316578 BSD domain containing 1 isoform b [Homo sapiens]
Length = 430
Score = 29.6 bits (65), Expect = 0.64
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 55 ENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFL---EYHQKLLEESLQQKGL 111
EN +T+V ++T ++ E+ I V + + TA A + + QKLLE SL+++GL
Sbjct: 262 ENLVTSVEPPAEVTPSESSES--ISLVTQIANPATAPEARVLPKDLSQKLLEASLEEQGL 319
Query: 112 SEKSAES 118
+ E+
Sbjct: 320 AVDVGET 326
>gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens]
Length = 183
Score = 29.6 bits (65), Expect = 0.64
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 35 RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDDETGLIDFVK-EFIDKQTASIA 93
+P W +GL A++ A LE + L DL A + + L F++ ++ +Q +I
Sbjct: 88 KPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLAVEKGDPQLCHFLESHYLHEQVKTIK 147
Query: 94 FL-EYHQKLLEESLQQKGLSE 113
L Y L + + GL+E
Sbjct: 148 ELGGYVSNLRKICSPEAGLAE 168
>gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo
sapiens]
Length = 436
Score = 29.3 bits (64), Expect = 0.83
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 45 LQALKFAVQLENTLTNVLQDLKITATK---DDETGLIDFVKEF----------IDKQTAS 91
L++LK ++++N + QD+K+ + D+ T L+D +K F +DK A
Sbjct: 306 LESLKAVLEIKNEKLHQ-QDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAI 364
Query: 92 IAFLEYHQKLLEESLQQKGLSEK 114
L Q +L+ESL+++ K
Sbjct: 365 SRQLSTEQAVLQESLEKESKVNK 387
>gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sapiens]
Length = 1270
Score = 29.3 bits (64), Expect = 0.83
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 45 LQALKFAVQLENTLTNVLQDLKITATK---DDETGLIDFVKEF----------IDKQTAS 91
L++LK ++++N + QD+K+ + D+ T L+D +K F +DK A
Sbjct: 1140 LESLKAVLEIKNEKLHQ-QDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAI 1198
Query: 92 IAFLEYHQKLLEESLQQKGLSEK 114
L Q +L+ESL+++ K
Sbjct: 1199 SRQLSTEQAVLQESLEKESKVNK 1221
>gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sapiens]
Length = 1216
Score = 29.3 bits (64), Expect = 0.83
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 45 LQALKFAVQLENTLTNVLQDLKITATK---DDETGLIDFVKEF----------IDKQTAS 91
L++LK ++++N + QD+K+ + D+ T L+D +K F +DK A
Sbjct: 1086 LESLKAVLEIKNEKLHQ-QDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAI 1144
Query: 92 IAFLEYHQKLLEESLQQKGLSEK 114
L Q +L+ESL+++ K
Sbjct: 1145 SRQLSTEQAVLQESLEKESKVNK 1167
>gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo
sapiens]
Length = 517
Score = 29.3 bits (64), Expect = 0.83
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 45 LQALKFAVQLENTLTNVLQDLKITATK---DDETGLIDFVKEF----------IDKQTAS 91
L++LK ++++N + QD+K+ + D+ T L+D +K F +DK A
Sbjct: 387 LESLKAVLEIKNEKLHQ-QDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAI 445
Query: 92 IAFLEYHQKLLEESLQQKGLSEK 114
L Q +L+ESL+++ K
Sbjct: 446 SRQLSTEQAVLQESLEKESKVNK 468
>gi|77874206 poly(A) polymerase beta (testis specific) [Homo
sapiens]
Length = 637
Score = 29.3 bits (64), Expect = 0.83
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 27 ISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTNVL 62
++D L + PNIDN+ L+A+K + N +N+L
Sbjct: 207 VTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNIL 242
>gi|32490557 poly(A) polymerase alpha [Homo sapiens]
Length = 745
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 27 ISDAYLSMRPNIDNWGNGLQALKFAVQLENTLTNVL 62
++D L + PNIDN+ L+A+K + N +N+L
Sbjct: 206 VTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNIL 241
>gi|50312666 ubiquitin specific peptidase 25 [Homo sapiens]
Length = 1055
Score = 27.7 bits (60), Expect = 2.4
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 77 LIDFVKEFIDKQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSV 123
L DFV+E D Q E+ +L +++LQ+K L+ + +ETSV
Sbjct: 685 LRDFVEE--DNQRFEKELEEWDAQLAQKALQEKLLASQKLRESETSV 729
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
precursor [Homo sapiens]
Length = 228
Score = 27.7 bits (60), Expect = 2.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 50 FAVQLENTLTNVLQDLKITATKDDETGLIDFVKEFIDKQTASIAFLEY 97
F + +E T+ N D K+T DD L+ KE ++ + + LE+
Sbjct: 76 FKILIEGTVKNEKSDPKVTLKDDDRITLVGSTKEKMNNISIVLRDLEF 123
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 87 KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
++ A+ A +E H+K E++L+QK E+ + +EET
Sbjct: 2159 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2198
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 87 KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
++ A+ A +E H+K E++L+QK E+ + +EET
Sbjct: 2163 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2202
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 87 KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
++ A+ A +E H+K E++L+QK E+ + +EET
Sbjct: 2159 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2198
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 87 KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
++ A+ A +E H+K E++L+QK E+ + +EET
Sbjct: 2127 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2166
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 87 KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
++ A+ A +E H+K E++L+QK E+ + +EET
Sbjct: 2296 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2335
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 87 KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
++ A+ A +E H+K E++L+QK E+ + +EET
Sbjct: 2137 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2176
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 87 KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
++ A+ A +E H+K E++L+QK E+ + +EET
Sbjct: 2145 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2184
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 87 KQTASIAFLEYHQKLLEESLQQKGLSEKSAESAETSVEET 126
++ A+ A +E H+K E++L+QK E+ + +EET
Sbjct: 2186 QKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQLEET 2225
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,794,966
Number of Sequences: 37866
Number of extensions: 130557
Number of successful extensions: 475
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 42
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.