Search of human proteins with 239752590

Search of human proteins with 239752590

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752590 PREDICTED: similar to Beta-glucuronidase [Homo
sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752590 PREDICTED: similar to Beta-glucuronidase [Homo sapi...   426   e-120
gi|4504223 glucuronidase, beta [Homo sapiens]                         173   9e-44
gi|221219000 phospholipase C-like 2 isoform 1 [Homo sapiens]           33   0.12 
gi|163644311 phospholipase C-like 2 isoform 2 [Homo sapiens]           33   0.12 
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s...    31   0.58 
gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC...    29   2.9  
gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC...    29   2.9  
gi|116284392 mucin 2 precursor [Homo sapiens]                          29   2.9  
gi|171543895 ataxin 2 [Homo sapiens]                                   29   2.9  
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...    28   6.4  
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap...    27   8.4  

>gi|239752590 PREDICTED: similar to Beta-glucuronidase [Homo
           sapiens]
          Length = 194

 Score =  426 bits (1096), Expect = e-120
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MLYPKESPSREPKELGGLWSFPADLDNRRQGFKEKWYPRPLQESGPTLDVLVPFSFNDIG 60
           MLYPKESPSREPKELGGLWSFPADLDNRRQGFKEKWYPRPLQESGPTLDVLVPFSFNDIG
Sbjct: 1   MLYPKESPSREPKELGGLWSFPADLDNRRQGFKEKWYPRPLQESGPTLDVLVPFSFNDIG 60

Query: 61  QDWRLRHFVSWMLYEWEVTLPEKWTQDLRARVVLRIGSAHSYDIVVSQGLFCPEHRLTSS 120
           QDWRLRHFVSWMLYEWEVTLPEKWTQDLRARVVLRIGSAHSYDIVVSQGLFCPEHRLTSS
Sbjct: 61  QDWRLRHFVSWMLYEWEVTLPEKWTQDLRARVVLRIGSAHSYDIVVSQGLFCPEHRLTSS 120

Query: 121 TTRDCSGLCFCTRHPPPTSMTSPSPPVWSMTVGSEWYENKNNREIYHRCYLSDGNERMFN 180
           TTRDCSGLCFCTRHPPPTSMTSPSPPVWSMTVGSEWYENKNNREIYHRCYLSDGNERMFN
Sbjct: 121 TTRDCSGLCFCTRHPPPTSMTSPSPPVWSMTVGSEWYENKNNREIYHRCYLSDGNERMFN 180

Query: 181 WLSSDSCECEYVGD 194
           WLSSDSCECEYVGD
Sbjct: 181 WLSSDSCECEYVGD 194


>gi|4504223 glucuronidase, beta [Homo sapiens]
          Length = 651

 Score =  173 bits (438), Expect = 9e-44
 Identities = 85/116 (73%), Positives = 94/116 (81%), Gaps = 1/116 (0%)

Query: 1   MLYPKESPSREPKELGGLWSFPADL-DNRRQGFKEKWYPRPLQESGPTLDVLVPFSFNDI 59
           MLYP+ESPSRE KEL GLWSF AD  DNRR+GF+E+WY RPL ESGPT+D+ VP SFNDI
Sbjct: 27  MLYPQESPSRECKELDGLWSFRADFSDNRRRGFEEQWYRRPLWESGPTVDMPVPSSFNDI 86

Query: 60  GQDWRLRHFVSWMLYEWEVTLPEKWTQDLRARVVLRIGSAHSYDIVVSQGLFCPEH 115
            QDWRLRHFV W+ YE EV LPE+WTQDLR RVVLRIGSAHSY IV   G+   EH
Sbjct: 87  SQDWRLRHFVGWVWYEREVILPERWTQDLRTRVVLRIGSAHSYAIVWVNGVDTLEH 142


>gi|221219000 phospholipase C-like 2 isoform 1 [Homo sapiens]
          Length = 1127

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 135 PPPTSMTSPSPPVWSMTVGSEWYENKNNREIYHRCYLSDGNERMFNW 181
           P    ++S S  + SM  GSE  + ++N  IYHR +L D + +   W
Sbjct: 128 PTEKKISSASDCINSMVEGSELKKVRSNSRIYHRYFLLDADMQSLRW 174


>gi|163644311 phospholipase C-like 2 isoform 2 [Homo sapiens]
          Length = 1001

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 135 PPPTSMTSPSPPVWSMTVGSEWYENKNNREIYHRCYLSDGNERMFNW 181
           P    ++S S  + SM  GSE  + ++N  IYHR +L D + +   W
Sbjct: 2   PTEKKISSASDCINSMVEGSELKKVRSNSRIYHRYFLLDADMQSLRW 48


>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
           sapiens]
          Length = 2302

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 132 TRHPPPTSMTSPSPPVWSMTVGSEWYENKNNREIYHRCYLSDGNERMFNWLSSDSC 187
           +RHP    +  P    W     S  Y+N+N    Y    L   N  +FNW +  +C
Sbjct: 501 SRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQ---LEGVNWLLFNWYNRQNC 553


>gi|90669228 deleted in lung and esophageal cancer 1 isoform
           DLEC1-S3 [Homo sapiens]
          Length = 1778

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 116 RLTSSTTRDCSGLCFCTRHPPPTSMTSPSPPVWSMTVGSEWYENKNNREIYH 167
           R  +S T +C G  +    PP  S +SPS P W     S  Y +    E +H
Sbjct: 10  RSLASRTNECQGTMWAPTSPPAGS-SSPSQPTWK----SSLYSSLAYSEAFH 56


>gi|90669194 deleted in lung and esophageal cancer 1 isoform
           DLEC1-N1 [Homo sapiens]
          Length = 1755

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 116 RLTSSTTRDCSGLCFCTRHPPPTSMTSPSPPVWSMTVGSEWYENKNNREIYH 167
           R  +S T +C G  +    PP  S +SPS P W     S  Y +    E +H
Sbjct: 10  RSLASRTNECQGTMWAPTSPPAGS-SSPSQPTWK----SSLYSSLAYSEAFH 56


>gi|116284392 mucin 2 precursor [Homo sapiens]
          Length = 5179

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 113  PEHRLTSSTTRDCSGLCFCTRHPPPTSMTSPSP 145
            P   +T++TT   +     T  PPPT+MT+PSP
Sbjct: 1705 PSSPITTTTTPSST----TTPSPPPTTMTTPSP 1733


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 115 HRLTSSTTRDCSGLCFCTRHP------PPTSMTSPSPPVWSMTV 152
           HR+++      SGL F + +P      PP + TSPS   WS  V
Sbjct: 634 HRVSAGRGSISSGLEFVSHNPPSEAATPPVARTSPSGGTWSSVV 677


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
           sapiens]
          Length = 2997

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 132 TRHPPPTSMTSPSPPVWSMTVGSEWYENKNNREIYHRCYLSDGNERMFNWLSSDSC 187
           +R P    +  P    W  +  S  Y+N N    Y    L   N  +FNW +  +C
Sbjct: 937 SREPETERVERPPADDWKKSESSREYKNNNKLREYQ---LEGVNWLLFNWYNMRNC 989


>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
          sapiens]
          Length = 443

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 4  PKESPSREPKELGGLWSFPADLDNRRQGFKEKWYPRPLQESG 45
          P  +P R P  +   W  P  L     G + +  PRP   +G
Sbjct: 39 PASAPQRHPAPVPARWPGPGALPGASPGVRRRRPPRPRPRAG 80


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,790,234
Number of Sequences: 37866
Number of extensions: 477964
Number of successful extensions: 1358
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1339
Number of HSP's gapped (non-prelim): 21
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.