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Search of human proteins with 239752545
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752545 PREDICTED: similar to interleukin 3 receptor,
alpha, partial [Homo sapiens]
(83 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752545 PREDICTED: similar to interleukin 3 receptor, alpha... 179 5e-46
gi|13324710 interleukin 3 receptor, alpha precursor [Homo sapiens] 166 3e-42
gi|24307971 serine/threonine kinase 38 like [Homo sapiens] 31 0.24
gi|6005814 serine/threonine kinase 38 [Homo sapiens] 30 0.41
gi|20070195 colony stimulating factor 2 receptor alpha chain iso... 28 1.2
gi|238908519 colony stimulating factor 2 receptor alpha chain is... 28 1.2
gi|238908517 colony stimulating factor 2 receptor alpha chain is... 28 1.2
gi|238908515 colony stimulating factor 2 receptor alpha chain is... 28 1.2
gi|27437040 colony stimulating factor 2 receptor alpha chain iso... 28 1.2
gi|27437036 colony stimulating factor 2 receptor alpha chain iso... 28 1.2
gi|27437034 colony stimulating factor 2 receptor alpha chain iso... 28 1.2
gi|27437032 colony stimulating factor 2 receptor alpha chain iso... 28 1.2
gi|118601070 hypothetical protein LOC158724 [Homo sapiens] 27 4.6
gi|223029410 talin 1 [Homo sapiens] 26 7.8
gi|8922108 cytokine-like 1 [Homo sapiens] 26 7.8
>gi|239752545 PREDICTED: similar to interleukin 3 receptor, alpha,
partial [Homo sapiens]
Length = 83
Score = 179 bits (453), Expect = 5e-46
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MVAHAYPNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSMPAVNNSYCQFGAISLC 60
MVAHAYPNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSMPAVNNSYCQFGAISLC
Sbjct: 1 MVAHAYPNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSMPAVNNSYCQFGAISLC 60
Query: 61 EVTNYTVRVANPPFSTWILFPEN 83
EVTNYTVRVANPPFSTWILFPEN
Sbjct: 61 EVTNYTVRVANPPFSTWILFPEN 83
>gi|13324710 interleukin 3 receptor, alpha precursor [Homo
sapiens]
Length = 378
Score = 166 bits (421), Expect = 3e-42
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 7 PNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSMPAVNNSYCQFGAISLCEVTNYT 66
PNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSMPAVNNSYCQFGAISLCEVTNYT
Sbjct: 23 PNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSMPAVNNSYCQFGAISLCEVTNYT 82
Query: 67 VRVANPPFSTWILFPEN 83
VRVANPPFSTWILFPEN
Sbjct: 83 VRVANPPFSTWILFPEN 99
>gi|24307971 serine/threonine kinase 38 like [Homo sapiens]
Length = 464
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 8 NPP----ITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSMPAVNNSYCQFGAISLCE-- 61
NPP N+ K KA+ TW NR V DY P V + Q G LC+
Sbjct: 253 NPPSDFSFQNMNSKRKAE--TWKKNRRQLAYSTVGTPDYIAPEV---FMQTGYNKLCDWW 307
Query: 62 ---VTNYTVRVANPPF 74
V Y + + PPF
Sbjct: 308 SLGVIMYEMLIGYPPF 323
>gi|6005814 serine/threonine kinase 38 [Homo sapiens]
Length = 465
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 4 HAYPNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSMPAVNNSYCQFGAISLCE-- 61
H+ P+ T M +K + TW NR V DY P V + Q G LC+
Sbjct: 251 HSLPSD-FTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEV---FMQTGYNKLCDWW 306
Query: 62 ---VTNYTVRVANPPF 74
V Y + + PPF
Sbjct: 307 SLGVIMYEMLIGYPPF 322
>gi|20070195 colony stimulating factor 2 receptor alpha chain
isoform a precursor [Homo sapiens]
Length = 400
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 13 NLRMKAKAQQLTWDLNRNVTDIECV---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTV 67
N+R ++ L+WD N T +C K P ++N+ C F I L E + V
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEV 96
Query: 68 RV--ANPPFSTWILFPEN 83
V + F +L+P +
Sbjct: 97 HVNTSQRGFQQKLLYPNS 114
>gi|238908519 colony stimulating factor 2 receptor alpha chain
isoform g precursor [Homo sapiens]
Length = 410
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 13 NLRMKAKAQQLTWDLNRNVTDIECV---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTV 67
N+R ++ L+WD N T +C K P ++N+ C F I L E + V
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEV 96
Query: 68 RV--ANPPFSTWILFPEN 83
V + F +L+P +
Sbjct: 97 HVNTSQRGFQQKLLYPNS 114
>gi|238908517 colony stimulating factor 2 receptor alpha chain
isoform f precursor [Homo sapiens]
Length = 434
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 13 NLRMKAKAQQLTWDLNRNVTDIECV---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTV 67
N+R ++ L+WD N T +C K P ++N+ C F I L E + V
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEV 96
Query: 68 RV--ANPPFSTWILFPEN 83
V + F +L+P +
Sbjct: 97 HVNTSQRGFQQKLLYPNS 114
>gi|238908515 colony stimulating factor 2 receptor alpha chain
isoform a precursor [Homo sapiens]
Length = 400
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 13 NLRMKAKAQQLTWDLNRNVTDIECV---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTV 67
N+R ++ L+WD N T +C K P ++N+ C F I L E + V
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEV 96
Query: 68 RV--ANPPFSTWILFPEN 83
V + F +L+P +
Sbjct: 97 HVNTSQRGFQQKLLYPNS 114
>gi|27437040 colony stimulating factor 2 receptor alpha chain
isoform e precursor [Homo sapiens]
Length = 233
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 13 NLRMKAKAQQLTWDLNRNVTDIECV---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTV 67
N+R ++ L+WD N T +C K P ++N+ C F I L E + V
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEV 96
Query: 68 RV--ANPPFSTWILFPEN 83
V + F +L+P +
Sbjct: 97 HVNTSQRGFQQKLLYPNS 114
>gi|27437036 colony stimulating factor 2 receptor alpha chain
isoform c precursor [Homo sapiens]
Length = 333
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 13 NLRMKAKAQQLTWDLNRNVTDIECV---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTV 67
N+R ++ L+WD N T +C K P ++N+ C F I L E + V
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEV 96
Query: 68 RV--ANPPFSTWILFPEN 83
V + F +L+P +
Sbjct: 97 HVNTSQRGFQQKLLYPNS 114
>gi|27437034 colony stimulating factor 2 receptor alpha chain
isoform b precursor [Homo sapiens]
Length = 377
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 13 NLRMKAKAQQLTWDLNRNVTDIECV---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTV 67
N+R ++ L+WD N T +C K P ++N+ C F I L E + V
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEV 96
Query: 68 RV--ANPPFSTWILFPEN 83
V + F +L+P +
Sbjct: 97 HVNTSQRGFQQKLLYPNS 114
>gi|27437032 colony stimulating factor 2 receptor alpha chain
isoform a precursor [Homo sapiens]
Length = 400
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 13 NLRMKAKAQQLTWDLNRNVTDIECV---KDADYSMPAVNNSYCQ--FGAISLCEVTNYTV 67
N+R ++ L+WD N T +C K P ++N+ C F I L E + V
Sbjct: 37 NVRFDSRTMNLSWDCQENTTFSKCFLTDKKNRVVEPRLSNNECSCTFREICLHEGVTFEV 96
Query: 68 RV--ANPPFSTWILFPEN 83
V + F +L+P +
Sbjct: 97 HVNTSQRGFQQKLLYPNS 114
>gi|118601070 hypothetical protein LOC158724 [Homo sapiens]
Length = 791
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 2 VAHAYPNPPITNLRMKAKAQQLTWDLNRNVTD 33
V+H P PPIT R Q L D R + D
Sbjct: 244 VSHIRPGPPITRRRSSLLRQLLKLDSERKLED 275
>gi|223029410 talin 1 [Homo sapiens]
Length = 2541
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 3 AHAYPNPPITNLRMKAKAQQLTWDLNRNVTDIECVKDADYSMPAVNNS 50
A +P P + R+ A+ +T LNR V+ + +D D ++ AV ++
Sbjct: 1172 AAGHPGDPESQQRLAQVAKAVTQALNRCVSCLPGQRDVDNALRAVGDA 1219
>gi|8922108 cytokine-like 1 [Homo sapiens]
Length = 136
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 5 AYPNPPITNLRMKAKAQQLTWDLN 28
A P PP RM+A +Q++T D N
Sbjct: 20 ARPTPPTCYSRMRALSQEITRDFN 43
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,537,555
Number of Sequences: 37866
Number of extensions: 108170
Number of successful extensions: 213
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 16
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.