Guide to the Human Genome
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Name: LOC100294393 Sequence: fasta or formatted (83aa) NCBI GI: 239752545
Description:

PREDICTED: similar to interleukin 3 receptor, alpha, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6          8           1
 C cysteine            3.6          3           1
 D aspartate           4.8          4           1
 E glutamate           3.6          3           1
 F phenylalanine       3.6          3           1
 G glycine             1.2          1           1
 H histidine           1.2          1           1
 I isoleucine          4.8          4           1
 K lysine              3.6          3           1
 L leucine             6.0          5           1
 M methionine          3.6          3           1
 N asparagine         10.8          9           2
 P proline             8.4          7           2
 Q glutamine           3.6          3           2
 R arginine            3.6          3           1
 S serine              4.8          4           1
 T threonine           7.2          6           1
 V valine              8.4          7           1
 W tryptophan          2.4          2           1
 Y tyrosine            4.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to interleukin 3 receptor, alpha... 
IL3RA                 0.916   interleukin 3 receptor, alpha precursor 
STK38L                0.039   serine/threonine kinase 38 like 
STK38                 0.032   serine/threonine kinase 38 
CSF2RA                0.019   colony stimulating factor 2 receptor alpha chain iso...
CSF2RA                0.019   colony stimulating factor 2 receptor alpha chain is...
CSF2RA                0.019   colony stimulating factor 2 receptor alpha chain is...
CSF2RA                0.019   colony stimulating factor 2 receptor alpha chain is...
CSF2RA                0.019   colony stimulating factor 2 receptor alpha chain iso...
CSF2RA                0.019   colony stimulating factor 2 receptor alpha chain iso...
CSF2RA                0.019   colony stimulating factor 2 receptor alpha chain iso...
CSF2RA                0.019   colony stimulating factor 2 receptor alpha chain iso...
FAM47A                0.013   hypothetical protein LOC158724 
TLN1                  0.006   talin 1 
CYTL1                 0.006   cytokine-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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