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Search of human proteins with 239752504
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752504 PREDICTED: hypothetical protein [Homo sapiens]
(51 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752504 PREDICTED: hypothetical protein [Homo sapiens] 111 1e-25
gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens] 56 5e-09
gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens] 56 5e-09
gi|169184311 PREDICTED: similar to COBW domain containing 1 [Hom... 56 5e-09
gi|169177343 PREDICTED: COBW domain containing 7 [Homo sapiens] 56 5e-09
gi|146231952 COBW domain containing 6 [Homo sapiens] 56 5e-09
gi|33469141 COBW domain-containing protein 2 [Homo sapiens] 56 5e-09
gi|148727351 COBW domain containing 3 [Homo sapiens] 56 5e-09
gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens] 56 5e-09
gi|119120938 COBW domain containing 5 [Homo sapiens] 56 5e-09
gi|169163827 PREDICTED: similar to UPF0634 protein KIAA1641 [Hom... 27 2.7
gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 27 2.7
gi|124517695 ankyrin repeat domain 36B [Homo sapiens] 27 2.7
>gi|239752504 PREDICTED: hypothetical protein [Homo sapiens]
Length = 51
Score = 111 bits (278), Expect = 1e-25
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 1 MVGLIKICHLIQNLLWEKNVRNKDNHCMEVIRLKVQFTVADFWTKSFSWLL 51
MVGLIKICHLIQNLLWEKNVRNKDNHCMEVIRLKVQFTVADFWTKSFSWLL
Sbjct: 1 MVGLIKICHLIQNLLWEKNVRNKDNHCMEVIRLKVQFTVADFWTKSFSWLL 51
>gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens]
Length = 376
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 11 IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41
IQNLLWEKNVRNKDNHCMEVIRLK ++ D
Sbjct: 275 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 305
>gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens]
Length = 359
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 11 IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41
IQNLLWEKNVRNKDNHCMEVIRLK ++ D
Sbjct: 258 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 288
>gi|169184311 PREDICTED: similar to COBW domain containing 1 [Homo
sapiens]
Length = 181
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 11 IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41
IQNLLWEKNVRNKDNHCMEVIRLK ++ D
Sbjct: 120 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 150
>gi|169177343 PREDICTED: COBW domain containing 7 [Homo sapiens]
Length = 247
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 11 IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41
IQNLLWEKNVRNKDNHCMEVIRLK ++ D
Sbjct: 146 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 176
>gi|146231952 COBW domain containing 6 [Homo sapiens]
Length = 395
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 11 IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41
IQNLLWEKNVRNKDNHCMEVIRLK ++ D
Sbjct: 294 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 324
>gi|33469141 COBW domain-containing protein 2 [Homo sapiens]
Length = 395
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 11 IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41
IQNLLWEKNVRNKDNHCMEVIRLK ++ D
Sbjct: 294 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 324
>gi|148727351 COBW domain containing 3 [Homo sapiens]
Length = 395
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 11 IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41
IQNLLWEKNVRNKDNHCMEVIRLK ++ D
Sbjct: 294 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 324
>gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens]
Length = 395
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 11 IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41
IQNLLWEKNVRNKDNHCMEVIRLK ++ D
Sbjct: 294 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 324
>gi|119120938 COBW domain containing 5 [Homo sapiens]
Length = 347
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 11 IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41
IQNLLWEKNVRNKDNHCMEVIRLK ++ D
Sbjct: 246 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 276
>gi|169163827 PREDICTED: similar to UPF0634 protein KIAA1641 [Homo
sapiens]
Length = 475
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/22 (45%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 15 LWEKNVRNKDNHCMEVIRLKVQ 36
LW++ ++ KDNHC E +R+K++
Sbjct: 37 LWKRLIKLKDNHC-EQLRVKIR 57
>gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 1524
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/22 (45%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 15 LWEKNVRNKDNHCMEVIRLKVQ 36
LW++ ++ KDNHC E +R+K++
Sbjct: 987 LWKRLIKLKDNHC-EQLRVKIR 1007
>gi|124517695 ankyrin repeat domain 36B [Homo sapiens]
Length = 1121
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/22 (45%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 15 LWEKNVRNKDNHCMEVIRLKVQ 36
LW++ ++ KDNHC E +R+K++
Sbjct: 584 LWKRLIKLKDNHC-EQLRVKIR 604
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.139 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,834,665
Number of Sequences: 37866
Number of extensions: 45698
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 13
length of query: 51
length of database: 18,247,518
effective HSP length: 25
effective length of query: 26
effective length of database: 17,300,868
effective search space: 449822568
effective search space used: 449822568
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.