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Search of human proteins with 239752290
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens]
(213 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens] 444 e-125
gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens] 444 e-125
gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo sap... 444 e-125
gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens] 215 3e-56
gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens] 214 4e-56
gi|29126241 ferritin mitochondrial [Homo sapiens] 205 2e-53
gi|20149498 ferritin, light polypeptide [Homo sapiens] 153 1e-37
gi|169160876 PREDICTED: similar to hCG1648021 [Homo sapiens] 55 4e-08
gi|239747398 PREDICTED: similar to hCG1648021 [Homo sapiens] 55 4e-08
gi|239741224 PREDICTED: similar to hCG1648021 [Homo sapiens] 55 4e-08
gi|239753604 PREDICTED: hypothetical protein [Homo sapiens] 34 0.11
gi|239748182 PREDICTED: hypothetical protein [Homo sapiens] 34 0.11
gi|239742076 PREDICTED: hypothetical protein XP_002342430 [Homo ... 34 0.11
gi|31657109 zinc finger protein 282 [Homo sapiens] 30 1.5
gi|24797065 zinc finger protein 212 [Homo sapiens] 30 1.5
gi|195947369 junction-mediating and regulatory protein [Homo sap... 29 2.6
gi|46358366 zinc finger protein 746 [Homo sapiens] 28 4.4
gi|4505731 peroxisomal biogenesis factor 7 [Homo sapiens] 28 5.8
gi|169215836 PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 28 7.6
gi|169215635 PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 28 7.6
gi|148276990 zinc finger and BTB domain containing 38 [Homo sapi... 28 7.6
gi|224586796 G protein-coupled receptor 87 [Homo sapiens] 28 7.6
gi|169216042 PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 27 9.9
>gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens]
Length = 213
Score = 444 bits (1141), Expect = e-125
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MASTACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQRPLTAPLWQVRQNYHPDCD 60
MASTACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQRPLTAPLWQVRQNYHPDCD
Sbjct: 1 MASTACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQRPLTAPLWQVRQNYHPDCD 60
Query: 61 AAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHAQKLIMLQNLRG 120
AAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHAQKLIMLQNLRG
Sbjct: 61 AAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHAQKLIMLQNLRG 120
Query: 121 GRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQLCDFLESHF 180
GRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQLCDFLESHF
Sbjct: 121 GRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQLCDFLESHF 180
Query: 181 LNQQVKAIKELSGYLSNLRKMWATGNRPGRVPV 213
LNQQVKAIKELSGYLSNLRKMWATGNRPGRVPV
Sbjct: 181 LNQQVKAIKELSGYLSNLRKMWATGNRPGRVPV 213
>gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens]
Length = 213
Score = 444 bits (1141), Expect = e-125
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MASTACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQRPLTAPLWQVRQNYHPDCD 60
MASTACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQRPLTAPLWQVRQNYHPDCD
Sbjct: 1 MASTACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQRPLTAPLWQVRQNYHPDCD 60
Query: 61 AAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHAQKLIMLQNLRG 120
AAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHAQKLIMLQNLRG
Sbjct: 61 AAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHAQKLIMLQNLRG 120
Query: 121 GRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQLCDFLESHF 180
GRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQLCDFLESHF
Sbjct: 121 GRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQLCDFLESHF 180
Query: 181 LNQQVKAIKELSGYLSNLRKMWATGNRPGRVPV 213
LNQQVKAIKELSGYLSNLRKMWATGNRPGRVPV
Sbjct: 181 LNQQVKAIKELSGYLSNLRKMWATGNRPGRVPV 213
>gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo
sapiens]
Length = 213
Score = 444 bits (1141), Expect = e-125
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MASTACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQRPLTAPLWQVRQNYHPDCD 60
MASTACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQRPLTAPLWQVRQNYHPDCD
Sbjct: 1 MASTACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQRPLTAPLWQVRQNYHPDCD 60
Query: 61 AAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHAQKLIMLQNLRG 120
AAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHAQKLIMLQNLRG
Sbjct: 61 AAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHAQKLIMLQNLRG 120
Query: 121 GRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQLCDFLESHF 180
GRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQLCDFLESHF
Sbjct: 121 GRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQLCDFLESHF 180
Query: 181 LNQQVKAIKELSGYLSNLRKMWATGNRPGRVPV 213
LNQQVKAIKELSGYLSNLRKMWATGNRPGRVPV
Sbjct: 181 LNQQVKAIKELSGYLSNLRKMWATGNRPGRVPV 213
>gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens]
Length = 183
Score = 215 bits (547), Expect = 3e-56
Identities = 107/157 (68%), Positives = 126/157 (80%)
Query: 45 TAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQE 104
TA QVRQ Y +CDAA+NSH+ LEL+ S +YLSMAFY +RDDV LE F R FL S +
Sbjct: 3 TAQPSQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDD 62
Query: 105 KREHAQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLA 164
K EHAQKL+ LQNLRGG ICL DI KPE + WESGL AME AFHLE++VN SLL+L+ LA
Sbjct: 63 KMEHAQKLMRLQNLRGGHICLHDIRKPECQGWESGLVAMESAFHLEKNVNQSLLDLYQLA 122
Query: 165 MEKGDPQLCDFLESHFLNQQVKAIKELSGYLSNLRKM 201
+EKGDPQLC FLESH+L++QVK IKEL GY+SNLRK+
Sbjct: 123 VEKGDPQLCHFLESHYLHEQVKTIKELGGYVSNLRKI 159
>gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens]
Length = 183
Score = 214 bits (545), Expect = 4e-56
Identities = 104/159 (65%), Positives = 128/159 (80%)
Query: 45 TAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQE 104
TA QVRQNYH D +AA+N +NLEL+AS VYLSM++Y DRDDV L+ F++ FL QS E
Sbjct: 3 TASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHE 62
Query: 105 KREHAQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLA 164
+REHA+KL+ LQN RGGRI L DI KP+ + WESGL AMECA HLE++VN SLLELH LA
Sbjct: 63 EREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLA 122
Query: 165 MEKGDPQLCDFLESHFLNQQVKAIKELSGYLSNLRKMWA 203
+K DP LCDF+E+H+LN+QVKAIKEL +++NLRKM A
Sbjct: 123 TDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGA 161
>gi|29126241 ferritin mitochondrial [Homo sapiens]
Length = 242
Score = 205 bits (522), Expect = 2e-53
Identities = 101/154 (65%), Positives = 124/154 (80%)
Query: 50 QVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHA 109
+VRQN+HPD +AA+N +NLEL+AS VYLSMA+Y RDDV L FSR FL QS+E+ EHA
Sbjct: 67 RVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHA 126
Query: 110 QKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGD 169
+KL+ LQN RGGRI L DI KPE++ WESGL AMECA LE++VN SLLELH LA +KGD
Sbjct: 127 EKLMRLQNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHALASDKGD 186
Query: 170 PQLCDFLESHFLNQQVKAIKELSGYLSNLRKMWA 203
P LCDFLE+++LN+QVK+IKEL ++ NL KM A
Sbjct: 187 PHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGA 220
>gi|20149498 ferritin, light polypeptide [Homo sapiens]
Length = 175
Score = 153 bits (386), Expect = 1e-37
Identities = 76/152 (50%), Positives = 102/152 (67%)
Query: 50 QVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREHA 109
Q+RQNY D +AAVNS VNL L AS YLS+ FY DRDDV LE S F ++EKRE
Sbjct: 4 QIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGY 63
Query: 110 QKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGD 169
++L+ +QN RGGR DI KP + W AM+ A LE+ +N +LL+LH L + D
Sbjct: 64 ERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTD 123
Query: 170 PQLCDFLESHFLNQQVKAIKELSGYLSNLRKM 201
P LCDFLE+HFL+++VK IK++ +L+NL ++
Sbjct: 124 PHLCDFLETHFLDEEVKLIKKMGDHLTNLHRL 155
>gi|169160876 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 55.1 bits (131), Expect = 4e-08
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 40 CQRPLTAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFL 99
CQ +++ Q+ QNY + +A +N VNL L AS + L + FY RD+V+LE F
Sbjct: 90 CQPTMSS---QIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEGMGH-FG 145
Query: 100 SQSQEKREHAQKLIMLQNLRGGRICLPDIWKPERE 134
++EKR+ ++ + +Q+ G DI P ++
Sbjct: 146 ELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
>gi|239747398 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 55.1 bits (131), Expect = 4e-08
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 40 CQRPLTAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFL 99
CQ +++ Q+ QNY + +A +N VNL L AS + L + FY RD+V+LE F
Sbjct: 90 CQPTMSS---QIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEGMGH-FG 145
Query: 100 SQSQEKREHAQKLIMLQNLRGGRICLPDIWKPERE 134
++EKR+ ++ + +Q+ G DI P ++
Sbjct: 146 ELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
>gi|239741224 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 55.1 bits (131), Expect = 4e-08
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 40 CQRPLTAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFL 99
CQ +++ Q+ QNY + +A +N VNL L AS + L + FY RD+V+LE F
Sbjct: 90 CQPTMSS---QIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEGMGH-FG 145
Query: 100 SQSQEKREHAQKLIMLQNLRGGRICLPDIWKPERE 134
++EKR+ ++ + +Q+ G DI P ++
Sbjct: 146 ELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
>gi|239753604 PREDICTED: hypothetical protein [Homo sapiens]
Length = 126
Score = 33.9 bits (76), Expect = 0.11
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 50/140 (35%)
Query: 49 WQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREH 108
+++ + +C A+N + ELH S YLSM
Sbjct: 3 YEIHGPFSEECGVAINRVASYELHISDAYLSM---------------------------- 34
Query: 109 AQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKG 168
+P + W +GLQA++ A LE ++ L +L A +
Sbjct: 35 ---------------------RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDD 73
Query: 169 DPQLCDFLESHFLNQQVKAI 188
+ L DF++ F+++Q +I
Sbjct: 74 ETGLIDFVK-EFIDKQTASI 92
>gi|239748182 PREDICTED: hypothetical protein [Homo sapiens]
Length = 126
Score = 33.9 bits (76), Expect = 0.11
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 50/140 (35%)
Query: 49 WQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREH 108
+++ + +C A+N + ELH S YLSM
Sbjct: 3 YEIHGPFSEECGVAINRVASYELHISDAYLSM---------------------------- 34
Query: 109 AQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKG 168
+P + W +GLQA++ A LE ++ L +L A +
Sbjct: 35 ---------------------RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDD 73
Query: 169 DPQLCDFLESHFLNQQVKAI 188
+ L DF++ F+++Q +I
Sbjct: 74 ETGLIDFVK-EFIDKQTASI 92
>gi|239742076 PREDICTED: hypothetical protein XP_002342430 [Homo
sapiens]
Length = 126
Score = 33.9 bits (76), Expect = 0.11
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 50/140 (35%)
Query: 49 WQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFLSQSQEKREH 108
+++ + +C A+N + ELH S YLSM
Sbjct: 3 YEIHGPFSEECGVAINRVASYELHISDAYLSM---------------------------- 34
Query: 109 AQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKG 168
+P + W +GLQA++ A LE ++ L +L A +
Sbjct: 35 ---------------------RPNIDNWGNGLQALKFAVQLENTLTNVLQDLKITATKDD 73
Query: 169 DPQLCDFLESHFLNQQVKAI 188
+ L DF++ F+++Q +I
Sbjct: 74 ETGLIDFVK-EFIDKQTASI 92
>gi|31657109 zinc finger protein 282 [Homo sapiens]
Length = 671
Score = 30.0 bits (66), Expect = 1.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 4 TACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQR 42
T I A +RK+ Q + N+E + T ++KL+DC++
Sbjct: 100 TVVAAIQAVERKVDAQASQLLNLEGRTGTAEKKLADCEK 138
>gi|24797065 zinc finger protein 212 [Homo sapiens]
Length = 495
Score = 30.0 bits (66), Expect = 1.5
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 4 TACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQR 42
T I A ++K+ Q +Q++E + T ++KL+DC++
Sbjct: 43 TVVAAIQAVEKKMESQAARLQSLEGRTGTAEKKLADCEK 81
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 29.3 bits (64), Expect = 2.6
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 104 EKREHAQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAFHL---EESVNYSLLE- 159
E+R+HA K M Q+LRGG + + + E +Y++ LQ E F + EE + + LE
Sbjct: 500 EQRKHALKEEM-QSLRGGTEAIARLDQLEADYYDLQLQLYEVQFEILKCEELLLTAQLES 558
Query: 160 LHYLAMEKGD 169
+ L EK D
Sbjct: 559 IKRLISEKRD 568
>gi|46358366 zinc finger protein 746 [Homo sapiens]
Length = 644
Score = 28.5 bits (62), Expect = 4.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 4 TACITIDAFKRKLAPQEGMMQNVEYCSATKKRKLSDCQR 42
T TI A +RK+ Q + ++E + ++KL+DC++
Sbjct: 13 TMAATIQAMERKIESQAARLLSLEGRTGMAEKKLADCEK 51
>gi|4505731 peroxisomal biogenesis factor 7 [Homo sapiens]
Length = 323
Score = 28.1 bits (61), Expect = 5.8
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 103 QEKREHAQKLIMLQ--NLRGGRICLPDIWKPEREYWESGLQAMECAFHLEESVNYSLL 158
Q +EHAQ++ + RG ++ + W + W+ + C F ES+ YS +
Sbjct: 105 QVYKEHAQEVYSVDWSQTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTI 162
>gi|169215836 PREDICTED: similar to SEC14p-like protein TAP3 [Homo
sapiens]
Length = 397
Score = 27.7 bits (60), Expect = 7.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 101 QSQEKREHAQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAF 147
QSQ+ + +K+I + L G + L D+WKP E + A+E +
Sbjct: 138 QSQKLGKRVEKIIAIFGLEG--LGLRDLWKPGIELLQEFFSALEANY 182
>gi|169215635 PREDICTED: similar to SEC14p-like protein TAP3 [Homo
sapiens]
Length = 397
Score = 27.7 bits (60), Expect = 7.6
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 101 QSQEKREHAQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAF 147
QSQ+ + +K+I + L G + L D+WKP E + A+E +
Sbjct: 138 QSQKLGKRVEKIIAIFGLEG--LGLRDLWKPGIELLQEFFSALEANY 182
>gi|148276990 zinc finger and BTB domain containing 38 [Homo
sapiens]
Length = 1195
Score = 27.7 bits (60), Expect = 7.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 129 WKPEREYWESGLQAMECAFHLEESVNYSLLELHYLAMEKGDPQL 172
++ E W +G + +C F LE + Y +L+ H + D +L
Sbjct: 502 YRTRHEIWHTGERRYQCIFCLETFMTYYILKNHQKSFHAIDHRL 545
>gi|224586796 G protein-coupled receptor 87 [Homo sapiens]
Length = 358
Score = 27.7 bits (60), Expect = 7.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 63 VNSHVNLELHASCVYLSMAFYLDRDDVTLERF----SRCFLSQSQEKREHAQKL 112
V H + SC+++++ L + + R+ SR F+SQS KR+H Q +
Sbjct: 201 VKWHTAVTYVNSCLFVAVLVILIGCYIAISRYIHKSSRQFISQSSRKRKHNQSI 254
>gi|169216042 PREDICTED: similar to SEC14p-like protein TAP3 [Homo
sapiens]
Length = 397
Score = 27.3 bits (59), Expect = 9.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 101 QSQEKREHAQKLIMLQNLRGGRICLPDIWKPEREYWESGLQAMECAF 147
QSQ+ + +K+I + L G + L D+WKP E + A+E +
Sbjct: 138 QSQKLGKKVEKIIAIFGLEG--LGLRDLWKPGIELLQEFFSALEANY 182
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,464,747
Number of Sequences: 37866
Number of extensions: 352954
Number of successful extensions: 847
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 26
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.