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Search of human proteins with 239752040
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752040 PREDICTED: hypothetical protein [Homo sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757524 PREDICTED: hypothetical protein XP_002345458 [Homo ... 306 6e-84
gi|239752040 PREDICTED: hypothetical protein [Homo sapiens] 306 6e-84
gi|239746524 PREDICTED: hypothetical protein XP_002343765 [Homo ... 306 6e-84
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 33 0.13
gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 29 1.4
gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 29 1.4
gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo ... 28 2.5
gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo ... 28 2.5
gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo ... 28 2.5
gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo ... 28 2.5
gi|25777608 NLR family member X1 isoform 1 [Homo sapiens] 27 5.5
gi|25777610 NLR family member X1 isoform 2 [Homo sapiens] 27 5.5
gi|239757644 PREDICTED: hypothetical protein [Homo sapiens] 27 7.1
gi|115387104 aldehyde dehydrogenase 9A1 [Homo sapiens] 27 9.3
>gi|239757524 PREDICTED: hypothetical protein XP_002345458 [Homo
sapiens]
Length = 157
Score = 306 bits (783), Expect = 6e-84
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MELLHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHA 60
MELLHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHA
Sbjct: 1 MELLHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHA 60
Query: 61 AVLPEGGFAVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPF 120
AVLPEGGFAVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPF
Sbjct: 61 AVLPEGGFAVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPF 120
Query: 121 QVRADFELGATEPALEGGDSPVWDRRWTVSWLELRLA 157
QVRADFELGATEPALEGGDSPVWDRRWTVSWLELRLA
Sbjct: 121 QVRADFELGATEPALEGGDSPVWDRRWTVSWLELRLA 157
>gi|239752040 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 306 bits (783), Expect = 6e-84
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MELLHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHA 60
MELLHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHA
Sbjct: 1 MELLHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHA 60
Query: 61 AVLPEGGFAVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPF 120
AVLPEGGFAVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPF
Sbjct: 61 AVLPEGGFAVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPF 120
Query: 121 QVRADFELGATEPALEGGDSPVWDRRWTVSWLELRLA 157
QVRADFELGATEPALEGGDSPVWDRRWTVSWLELRLA
Sbjct: 121 QVRADFELGATEPALEGGDSPVWDRRWTVSWLELRLA 157
>gi|239746524 PREDICTED: hypothetical protein XP_002343765 [Homo
sapiens]
Length = 157
Score = 306 bits (783), Expect = 6e-84
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MELLHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHA 60
MELLHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHA
Sbjct: 1 MELLHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHA 60
Query: 61 AVLPEGGFAVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPF 120
AVLPEGGFAVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPF
Sbjct: 61 AVLPEGGFAVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPF 120
Query: 121 QVRADFELGATEPALEGGDSPVWDRRWTVSWLELRLA 157
QVRADFELGATEPALEGGDSPVWDRRWTVSWLELRLA
Sbjct: 121 QVRADFELGATEPALEGGDSPVWDRRWTVSWLELRLA 157
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 32.7 bits (73), Expect = 0.13
Identities = 20/40 (50%), Positives = 22/40 (55%)
Query: 28 GAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHAAVLPEGG 67
GAV LV Q G G G+ A RA L VHA VLP+ G
Sbjct: 745 GAVRALVQQQVGGVGEGLGAERAAEGPLARVHALVLPQVG 784
Score = 27.3 bits (59), Expect = 5.5
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 17 EAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHAAVLPEGGFAVTQEVAM 76
EAA+ E V LVD Q G A G+AA L+ L V V+ + G A+ A+
Sbjct: 456 EAALATGEGPQARVHPLVDGQQGGALEGLAALATLVGPLARVVPQVVAQPGGALEGLAAL 515
Query: 77 RT 78
T
Sbjct: 516 GT 517
>gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 563
Score = 29.3 bits (64), Expect = 1.4
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 4 LHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHAAVL 63
LH A+ G A ER A + V A+ +AG + A R L L + AV+
Sbjct: 40 LHACARAGGGGARAAGAGFAERRAAAAEPDVSAK--MAGRSMQAARCPTDELSLTNCAVV 97
Query: 64 PEGGFAVTQEVAMR---------TLEVIPAVLDTDVRLEVP 95
E F Q V +R TL+ P+V+ + +P
Sbjct: 98 NEKDFQSGQHVIVRTSPNHRYTFTLKTHPSVVPGSIAFSLP 138
>gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 405
Score = 29.3 bits (64), Expect = 1.4
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 4 LHVLAQVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHAAVL 63
LH A+ G A ER A + V A+ +AG + A R L L + AV+
Sbjct: 40 LHACARAGGGGARAAGAGFAERRAAAAEPDVSAK--MAGRSMQAARCPTDELSLTNCAVV 97
Query: 64 PEGGFAVTQEVAMR---------TLEVIPAVLDTDVRLEVP 95
E F Q V +R TL+ P+V+ + +P
Sbjct: 98 NEKDFQSGQHVIVRTSPNHRYTFTLKTHPSVVPGSIAFSLP 138
>gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 28.5 bits (62), Expect = 2.5
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 14/134 (10%)
Query: 9 QVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHAAVLPEGGF 68
Q +F + VV + A+ V T +G LA + +L L H A+
Sbjct: 51 QTKPIFRKKGQVVLADEALATVRT---TEGPLACVQPPVVQQVL----LAHEAL------ 97
Query: 69 AVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPFQVRADFEL 128
+RTL + ++ R+ V ++ E AL + P V FQ A L
Sbjct: 98 -TAVSAGVRTLACVDHLVADQGRVAVEVNATLRAGERALLCMTPLVEQEADFQAEAPAAL 156
Query: 129 GATEPALEGGDSPV 142
G E SPV
Sbjct: 157 GTAEGPFACMSSPV 170
>gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo
sapiens]
Length = 348
Score = 28.5 bits (62), Expect = 2.5
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 14/134 (10%)
Query: 9 QVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHAAVLPEGGF 68
Q +F + VV + A+ V T +G LA + +L L H A+
Sbjct: 51 QTKPIFRKKGQVVLADEALATVRT---TEGPLACVQPPVVQQVL----LAHEAL------ 97
Query: 69 AVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPFQVRADFEL 128
+RTL + ++ R+ V ++ E AL + P V FQ A L
Sbjct: 98 -TAVSAGVRTLACVDHLVADQGRVAVEVNATLRAGERALLCMTPLVEQEADFQAEAPAAL 156
Query: 129 GATEPALEGGDSPV 142
G E SPV
Sbjct: 157 GTAEGPFACMSSPV 170
>gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo
sapiens]
Length = 348
Score = 28.5 bits (62), Expect = 2.5
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 14/134 (10%)
Query: 9 QVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHAAVLPEGGF 68
Q +F + VV + A+ V T +G LA + +L L H A+
Sbjct: 51 QTKPIFRKKGQVVLADEALATVRT---TEGPLACVQPPVVQQVL----LAHEAL------ 97
Query: 69 AVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPFQVRADFEL 128
+RTL + ++ R+ V ++ E AL + P V FQ A L
Sbjct: 98 -TAVSAGVRTLACVDHLVADQGRVAVEVNATLRAGERALLCMTPLVEQEADFQAEAPAAL 156
Query: 129 GATEPALEGGDSPV 142
G E SPV
Sbjct: 157 GTAEGPFACMSSPV 170
>gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 28.5 bits (62), Expect = 2.5
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 14/134 (10%)
Query: 9 QVAGLFGVEAAVVALERAVGAVDTLVDAQGGLAGAGVAAFRALLRMLRLVHAAVLPEGGF 68
Q +F + VV + A+ V T +G LA + +L L H A+
Sbjct: 51 QTKPIFRKKGQVVLADEALATVRT---TEGPLACVQPPVVQQVL----LAHEAL------ 97
Query: 69 AVTQEVAMRTLEVIPAVLDTDVRLEVPLHGAADIAELALERLLPRVHPHVPFQVRADFEL 128
+RTL + ++ R+ V ++ E AL + P V FQ A L
Sbjct: 98 -TAVSAGVRTLACVDHLVADQGRVAVEVNATLRAGERALLCMTPLVEQEADFQAEAPAAL 156
Query: 129 GATEPALEGGDSPV 142
G E SPV
Sbjct: 157 GTAEGPFACMSSPV 170
>gi|25777608 NLR family member X1 isoform 1 [Homo sapiens]
Length = 975
Score = 27.3 bits (59), Expect = 5.5
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 30 VDTLVDAQGGLAGAGVAAF-RALLRMLRLVHAAVLPEGGFAVTQEVAMRTLEVIPAVLDT 88
+ TL + L AGVA L + H ++L G + LE++ A LD
Sbjct: 781 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-------LGDEGLELLAAQLDR 833
Query: 89 DVRLE---VPLHGAADIAELALERLLPRVHP 116
+ +L+ V +GA D A LAL R R HP
Sbjct: 834 NRQLQELNVAYNGAGDTAALALAR-AAREHP 863
>gi|25777610 NLR family member X1 isoform 2 [Homo sapiens]
Length = 921
Score = 27.3 bits (59), Expect = 5.5
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 30 VDTLVDAQGGLAGAGVAAF-RALLRMLRLVHAAVLPEGGFAVTQEVAMRTLEVIPAVLDT 88
+ TL + L AGVA L + H ++L G + LE++ A LD
Sbjct: 781 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-------LGDEGLELLAAQLDR 833
Query: 89 DVRLE---VPLHGAADIAELALERLLPRVHP 116
+ +L+ V +GA D A LAL R R HP
Sbjct: 834 NRQLQELNVAYNGAGDTAALALAR-AAREHP 863
>gi|239757644 PREDICTED: hypothetical protein [Homo sapiens]
Length = 101
Score = 26.9 bits (58), Expect = 7.1
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 95 PLHGAADIAELALERLLPRVHPHVPFQVRADFELGATEPALEGGDSP--VWDRR 146
PL A + + L R L +H H+ +VR E P GD P VW RR
Sbjct: 41 PLQFPATLPGVQLLRSLHHLHLHLLERVRVRTEASGRRPGGGLGDLPPQVWGRR 94
>gi|115387104 aldehyde dehydrogenase 9A1 [Homo sapiens]
Length = 518
Score = 26.6 bits (57), Expect = 9.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 43 AGVAAFRALLRMLRLVHAAVLPEGGFAVTQEVAMR 77
AG+AA LLR LR A + G F V+Q + R
Sbjct: 5 AGLAALSPLLRSLRPSPVAAMSTGTFVVSQPLNYR 39
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,165,323
Number of Sequences: 37866
Number of extensions: 195864
Number of successful extensions: 462
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 15
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.