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Search of human proteins with 239751532
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751532 PREDICTED: similar to vacuolar protein sorting 53
(yeast) (predicted) [Homo sapiens]
(188 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751532 PREDICTED: similar to vacuolar protein sorting 53 (... 379 e-106
gi|239746043 PREDICTED: hypothetical protein XP_002343642 [Homo ... 376 e-105
gi|189491744 vacuolar protein sorting 53 isoform 1 [Homo sapiens] 118 3e-27
gi|154707916 glutathione S-transferase, C-terminal domain contai... 30 1.6
gi|149588660 glutathione S-transferase, C-terminal domain contai... 30 1.6
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens] 29 2.1
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens] 29 2.1
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens] 29 2.1
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens] 29 2.1
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 28 3.6
gi|116812632 hypothetical protein LOC154743 [Homo sapiens] 28 3.6
gi|27477041 adaptor-related protein complex 2, alpha 2 subunit [... 28 6.1
gi|18390344 ATR interacting protein isoform 2 [Homo sapiens] 28 6.1
gi|18390347 ATR interacting protein isoform 1 [Homo sapiens] 28 6.1
gi|31542246 kelch-like 36 [Homo sapiens] 28 6.1
gi|71164892 gremlin 2 precursor [Homo sapiens] 28 6.1
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 28 6.1
gi|52218826 olfactory receptor, family 1, subfamily J, member 4 ... 27 7.9
>gi|239751532 PREDICTED: similar to vacuolar protein sorting 53
(yeast) (predicted) [Homo sapiens]
Length = 188
Score = 379 bits (973), Expect = e-106
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MEGTREIHTPKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAPQELLVVL 60
MEGTREIHTPKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAPQELLVVL
Sbjct: 1 MEGTREIHTPKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAPQELLVVL 60
Query: 61 VDNYIKLFTDCNTEAFRKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSSLSLMPPT 120
VDNYIKLFTDCNTEAFRKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSSLSLMPPT
Sbjct: 61 VDNYIKLFTDCNTEAFRKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSSLSLMPPT 120
Query: 121 PEQELSGICKLIKKRLLKSSFSIGDFRRVEQLGSSRASPITFGLFWPHGVVALDPKIFKG 180
PEQELSGICKLIKKRLLKSSFSIGDFRRVEQLGSSRASPITFGLFWPHGVVALDPKIFKG
Sbjct: 121 PEQELSGICKLIKKRLLKSSFSIGDFRRVEQLGSSRASPITFGLFWPHGVVALDPKIFKG 180
Query: 181 LKVYGKKP 188
LKVYGKKP
Sbjct: 181 LKVYGKKP 188
>gi|239746043 PREDICTED: hypothetical protein XP_002343642 [Homo
sapiens]
Length = 188
Score = 376 bits (966), Expect = e-105
Identities = 187/188 (99%), Positives = 187/188 (99%)
Query: 1 MEGTREIHTPKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAPQELLVVL 60
MEGTREIHTPKLL REQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAPQELLVVL
Sbjct: 1 MEGTREIHTPKLLGREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAPQELLVVL 60
Query: 61 VDNYIKLFTDCNTEAFRKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSSLSLMPPT 120
VDNYIKLFTDCNTEAFRKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSSLSLMPPT
Sbjct: 61 VDNYIKLFTDCNTEAFRKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSSLSLMPPT 120
Query: 121 PEQELSGICKLIKKRLLKSSFSIGDFRRVEQLGSSRASPITFGLFWPHGVVALDPKIFKG 180
PEQELSGICKLIKKRLLKSSFSIGDFRRVEQLGSSRASPITFGLFWPHGVVALDPKIFKG
Sbjct: 121 PEQELSGICKLIKKRLLKSSFSIGDFRRVEQLGSSRASPITFGLFWPHGVVALDPKIFKG 180
Query: 181 LKVYGKKP 188
LKVYGKKP
Sbjct: 181 LKVYGKKP 188
>gi|189491744 vacuolar protein sorting 53 isoform 1 [Homo sapiens]
Length = 832
Score = 118 bits (295), Expect = 3e-27
Identities = 68/103 (66%), Positives = 75/103 (72%), Gaps = 4/103 (3%)
Query: 37 KGIQRCRWLLAEVVTAPQELLVVLVDNYIKLFTDCNTEAFRKILDMKGMKRNKQSSMLEF 96
KG+ R +L +VV AP E LVV VDNYIKL TDCNTE F+KILDMKG+KR++QSSMLE
Sbjct: 731 KGMTRAEMIL-KVVMAPHEPLVVFVDNYIKLLTDCNTETFQKILDMKGLKRSEQSSMLEL 789
Query: 97 LHLPLPMLPLGVESSSSLSLMPPTPEQELSGIC---KLIKKRL 136
L LP P G ESS SLSL PTPEQE S I KLIKKRL
Sbjct: 790 LRQRLPAPPSGAESSGSLSLTAPTPEQESSRIRKLEKLIKKRL 832
>gi|154707916 glutathione S-transferase, C-terminal domain
containing isoform 2 [Homo sapiens]
Length = 546
Score = 29.6 bits (65), Expect = 1.6
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 10 PKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAP--QELLVVLVDNYIKL 67
P RE HI F +G+ + LA++V P LV++ + +
Sbjct: 165 PATTNREPSHIRKAKASDLPPLEHVFAEGLY---FTLADIVLLPCIHHFLVIISRKFSEK 221
Query: 68 FTDCNTEA--FRKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSSLSLMPPTPEQ 123
+ A +++I ++ G+K ++FLHLP +L E +L +P EQ
Sbjct: 222 LVEFPLLASWYQRIQEVPGVKTAASKCGIQFLHLP-KLLTTSTEQHPNLCEVPGVEEQ 278
>gi|149588660 glutathione S-transferase, C-terminal domain
containing isoform 1 [Homo sapiens]
Length = 633
Score = 29.6 bits (65), Expect = 1.6
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 10 PKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAP--QELLVVLVDNYIKL 67
P RE HI F +G+ + LA++V P LV++ + +
Sbjct: 252 PATTNREPSHIRKAKASDLPPLEHVFAEGLY---FTLADIVLLPCIHHFLVIISRKFSEK 308
Query: 68 FTDCNTEA--FRKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSSLSLMPPTPEQ 123
+ A +++I ++ G+K ++FLHLP +L E +L +P EQ
Sbjct: 309 LVEFPLLASWYQRIQEVPGVKTAASKCGIQFLHLP-KLLTTSTEQHPNLCEVPGVEEQ 365
>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
Length = 1031
Score = 29.3 bits (64), Expect = 2.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 10 PKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAP 53
P L E + + PGLP G+ P + RW + E++T P
Sbjct: 685 PTLAEAVKIERTHPGLPKGVTCPGVKAEAPLSQRWTVPELLTHP 728
>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
Length = 1006
Score = 29.3 bits (64), Expect = 2.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 10 PKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAP 53
P L E + + PGLP G+ P + RW + E++T P
Sbjct: 660 PTLAEAVKIERTHPGLPKGVTCPGVKAEAPLSQRWTVPELLTHP 703
>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
Length = 1044
Score = 29.3 bits (64), Expect = 2.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 10 PKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAP 53
P L E + + PGLP G+ P + RW + E++T P
Sbjct: 698 PTLAEAVKIERTHPGLPKGVTCPGVKAEAPLSQRWTVPELLTHP 741
>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
Length = 1079
Score = 29.3 bits (64), Expect = 2.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 10 PKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAEVVTAP 53
P L E + + PGLP G+ P + RW + E++T P
Sbjct: 733 PTLAEAVKIERTHPGLPKGVTCPGVKAEAPLSQRWTVPELLTHP 776
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 28.5 bits (62), Expect = 3.6
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 77 RKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSSLSLMPPTPEQELSGICKLIKKRL 136
R+ L +G++ E +PLP++P G + + +P TP ++ +
Sbjct: 504 RRSLRSQGLEAGLSCGPSECPEMPLPLIP-GERQAGDGTSLPETPNPKMMSAVYAELESR 562
Query: 137 LKSSFSIGDFRRVEQLGSSRASP 159
L SSF ++ + SRASP
Sbjct: 563 LNSSFK----GKMGTVSKSRASP 581
>gi|116812632 hypothetical protein LOC154743 [Homo sapiens]
Length = 405
Score = 28.5 bits (62), Expect = 3.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 118 PPTPEQE-------LSGICKLIKKRLLKSSFSIGDFRRV 149
PP EQE LSG+ K + +RL K +GDF ++
Sbjct: 22 PPPREQERKLEQEKLSGVVKSVHRRLRKKYREVGDFDKI 60
>gi|27477041 adaptor-related protein complex 2, alpha 2 subunit
[Homo sapiens]
Length = 939
Score = 27.7 bits (60), Expect = 6.1
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 59 VLVDNYIKLFTDCNTEAFRKILDMKGMKRNKQSSMLEFLHLPLPMLPLGVESSSS----- 113
+L+ YIK F + E I D+ +++ +E + L L +S+
Sbjct: 539 LLLSTYIK-FVNLFPEVKPTIQDVLRSDSQLRNADVELQQRAVEYLRLSTVASTDILATV 597
Query: 114 LSLMPPTPEQELSGICKLIKKRLLKSSFSIGDFRR 148
L MPP PE+E S + KL KK+ + + D +R
Sbjct: 598 LEEMPPFPERESSILAKLKKKKGPSTVTDLEDTKR 632
>gi|18390344 ATR interacting protein isoform 2 [Homo sapiens]
Length = 764
Score = 27.7 bits (60), Expect = 6.1
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 74 EAFRKILDMKGMKRNKQSSMLEFLHLPLPMLP-----------LGVESSSSLSLMPPTPE 122
EA + +D + N Q S+L L L P++P ES + L PP
Sbjct: 292 EAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFG 351
Query: 123 QELSGICKLIKKRLLKSSFSIGDFRRVEQL 152
L+G+ L SFS+ R + L
Sbjct: 352 STLAGMSGLRTTGSYDGSFSLSALREAQNL 381
>gi|18390347 ATR interacting protein isoform 1 [Homo sapiens]
Length = 791
Score = 27.7 bits (60), Expect = 6.1
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 74 EAFRKILDMKGMKRNKQSSMLEFLHLPLPMLP-----------LGVESSSSLSLMPPTPE 122
EA + +D + N Q S+L L L P++P ES + L PP
Sbjct: 292 EAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFG 351
Query: 123 QELSGICKLIKKRLLKSSFSIGDFRRVEQL 152
L+G+ L SFS+ R + L
Sbjct: 352 STLAGMSGLRTTGSYDGSFSLSALREAQNL 381
>gi|31542246 kelch-like 36 [Homo sapiens]
Length = 616
Score = 27.7 bits (60), Expect = 6.1
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 40 QRCRWLLAEVVTAPQE--------LLVVLVDNYIKLFTDCNTEAFRKILDMKGMKRNKQS 91
QR R L +VV E LL V D + +FT EAF+K +++ G
Sbjct: 39 QRLRGLFCDVVLVADEQRVPAHRNLLAVCSDYFNSMFTIGMREAFQKEVELIGASYIGLK 98
Query: 92 SMLEFLH 98
++++FL+
Sbjct: 99 AVVDFLY 105
>gi|71164892 gremlin 2 precursor [Homo sapiens]
Length = 168
Score = 27.7 bits (60), Expect = 6.1
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 26 PSGIAAPDPFGKGI----QRCRWLLAEVVTAPQELLVVLVDNYIKLFTD-CNTEAFRKIL 80
P+G A P P+ G +R + + EV+ + QE LVV Y+K +D C T+ R+ +
Sbjct: 26 PAG-AIPSPYKDGSSNNSERWQHQIKEVLASSQEALVVTERKYLK--SDWCKTQPLRQTV 82
Query: 81 DMKGMK 86
+G +
Sbjct: 83 SEEGCR 88
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 27.7 bits (60), Expect = 6.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 3 GTREIHTPKLLEREQRHISSPGLPSGIAAPDPFGKGIQRCRWLLAE 48
G + T +L + Q H+ SPG+ SG+ P + +WL E
Sbjct: 369 GVQVEKTLQLTPKPQHHVGSPGIISGLGHQVPESVNLTCKQWLQME 414
>gi|52218826 olfactory receptor, family 1, subfamily J, member 4
[Homo sapiens]
Length = 313
Score = 27.3 bits (59), Expect = 7.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 85 MKRNKQSSMLEFLHLPLPMLP 105
MKR QSS+ EFL L LP+ P
Sbjct: 1 MKRENQSSVSEFLLLDLPIWP 21
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,761,489
Number of Sequences: 37866
Number of extensions: 344647
Number of successful extensions: 995
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 18
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.