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Search of human proteins with 239751237
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751237 PREDICTED: hypothetical protein XP_002347764 [Homo
sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751237 PREDICTED: hypothetical protein XP_002347764 [Homo ... 366 e-102
gi|22907060 solute carrier family 47, member 1 [Homo sapiens] 103 1e-22
gi|153792564 solute carrier family 47, member 2 isoform 2 [Homo ... 100 5e-22
gi|38261960 solute carrier family 47, member 2 isoform 1 [Homo s... 100 5e-22
gi|45827729 scribble isoform b [Homo sapiens] 28 5.4
gi|45827731 scribble isoform a [Homo sapiens] 28 5.4
gi|88196792 glycerol kinase 5 (putative) [Homo sapiens] 28 5.4
gi|120444924 ATP/GTP binding protein-like 1 [Homo sapiens] 27 7.1
gi|50962882 G patch domain containing 8 [Homo sapiens] 27 7.1
gi|224994221 SH3-domain binding protein 2 isoform b [Homo sapiens] 27 9.3
gi|224994219 SH3-domain binding protein 2 isoform c [Homo sapiens] 27 9.3
gi|242332502 hypothetical protein LOC9674 [Homo sapiens] 27 9.3
gi|242332500 hypothetical protein LOC9674 [Homo sapiens] 27 9.3
gi|242332498 hypothetical protein LOC9674 [Homo sapiens] 27 9.3
gi|242332496 hypothetical protein LOC9674 [Homo sapiens] 27 9.3
gi|170014705 SH3-domain binding protein 2 isoform a [Homo sapiens] 27 9.3
gi|170014703 SH3-domain binding protein 2 isoform a [Homo sapiens] 27 9.3
>gi|239751237 PREDICTED: hypothetical protein XP_002347764 [Homo
sapiens]
Length = 177
Score = 366 bits (939), Expect = e-102
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MKRELSDATLNWRRPLKVCHTRSVVLLQVVNVTGIAVGTGLASAYDTLMSQSFGVKNLKR 60
MKRELSDATLNWRRPLKVCHTRSVVLLQVVNVTGIAVGTGLASAYDTLMSQSFGVKNLKR
Sbjct: 1 MKRELSDATLNWRRPLKVCHTRSVVLLQVVNVTGIAVGTGLASAYDTLMSQSFGVKNLKR 60
Query: 61 VGIILQRGVLILMLCCFPCWADLVNTERILLLLKQDPKSPGFGECCIRAPSEPFEMSRRW 120
VGIILQRGVLILMLCCFPCWADLVNTERILLLLKQDPKSPGFGECCIRAPSEPFEMSRRW
Sbjct: 61 VGIILQRGVLILMLCCFPCWADLVNTERILLLLKQDPKSPGFGECCIRAPSEPFEMSRRW 120
Query: 121 LLPQPVGIGLCQFFREYIFYPLWKIPNSALALSHVCEIELLVPETVEKQTPVFFPVP 177
LLPQPVGIGLCQFFREYIFYPLWKIPNSALALSHVCEIELLVPETVEKQTPVFFPVP
Sbjct: 121 LLPQPVGIGLCQFFREYIFYPLWKIPNSALALSHVCEIELLVPETVEKQTPVFFPVP 177
>gi|22907060 solute carrier family 47, member 1 [Homo sapiens]
Length = 570
Score = 103 bits (256), Expect = 1e-22
Identities = 45/71 (63%), Positives = 60/71 (84%)
Query: 27 LQVVNVTGIAVGTGLASAYDTLMSQSFGVKNLKRVGIILQRGVLILMLCCFPCWADLVNT 86
+ V+NVTG++VG GL+SA DTL+SQ++G +NLK VG+ILQR L+L+LCCFPCWA +NT
Sbjct: 78 IAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNT 137
Query: 87 ERILLLLKQDP 97
+ ILLL +QDP
Sbjct: 138 QHILLLFRQDP 148
>gi|153792564 solute carrier family 47, member 2 isoform 2 [Homo
sapiens]
Length = 566
Score = 100 bits (250), Expect = 5e-22
Identities = 46/68 (67%), Positives = 55/68 (80%)
Query: 30 VNVTGIAVGTGLASAYDTLMSQSFGVKNLKRVGIILQRGVLILMLCCFPCWADLVNTERI 89
VNV G++VG GL+SA DTLMSQSFG N K VG+ILQRG L+L+LCC PCWA +NT+ I
Sbjct: 77 VNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHI 136
Query: 90 LLLLKQDP 97
LLL +QDP
Sbjct: 137 LLLFRQDP 144
>gi|38261960 solute carrier family 47, member 2 isoform 1 [Homo
sapiens]
Length = 602
Score = 100 bits (250), Expect = 5e-22
Identities = 46/68 (67%), Positives = 55/68 (80%)
Query: 30 VNVTGIAVGTGLASAYDTLMSQSFGVKNLKRVGIILQRGVLILMLCCFPCWADLVNTERI 89
VNV G++VG GL+SA DTLMSQSFG N K VG+ILQRG L+L+LCC PCWA +NT+ I
Sbjct: 77 VNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHI 136
Query: 90 LLLLKQDP 97
LLL +QDP
Sbjct: 137 LLLFRQDP 144
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 27.7 bits (60), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 91 LLLKQDPKSPGFGECCI-RAPSEPFEMSRR 119
LL+++DP PG E CI +AP E +S R
Sbjct: 1087 LLVRRDPAPPGLRELCIQKAPGERLGISIR 1116
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 27.7 bits (60), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 91 LLLKQDPKSPGFGECCI-RAPSEPFEMSRR 119
LL+++DP PG E CI +AP E +S R
Sbjct: 1087 LLVRRDPAPPGLRELCIQKAPGERLGISIR 1116
>gi|88196792 glycerol kinase 5 (putative) [Homo sapiens]
Length = 529
Score = 27.7 bits (60), Expect = 5.4
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 90 LLLLKQDPKSPGFGECCIRAPSEPFEMSRRWLLPQPVGIGLCQFFREYIFYPL--WKIPN 147
++ L D +S FGECC + M L G L Q FYPL WKI
Sbjct: 269 IVALVADQQSAMFGECCFQTGDVKLTMGTGTFLDINTGNSLQQTTGG--FYPLIGWKIGQ 326
Query: 148 SALALS 153
+ L+
Sbjct: 327 EVVCLA 332
>gi|120444924 ATP/GTP binding protein-like 1 [Homo sapiens]
Length = 1066
Score = 27.3 bits (59), Expect = 7.1
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 42 ASAYDTLMSQSFGVKNLKRVGIILQRGVLILMLCCFPCWADLVNTERILLLLKQD 96
A D L FG + L+ +G + G+LIL L C L+ LL ++D
Sbjct: 966 AHPVDGLQGLQFGTRELEEMGAMFCLGLLILELKSASCSHQLLAQAATLLSAEED 1020
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 27.3 bits (59), Expect = 7.1
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 10/42 (23%)
Query: 27 LQVVNVTGIAVGTGLASAYDTLMSQSFGVKN-----LKRVGI 63
+Q+ N TG+A GLAS SFG+KN L+++G+
Sbjct: 264 VQITNTTGLAQAPGLAS-----QGISFGIKNNLGTPLQKLGV 300
>gi|224994221 SH3-domain binding protein 2 isoform b [Homo sapiens]
Length = 618
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 94 KQDPKSPGFGECCIRAPSEPFEMSRRWLLPQPVGIGL 130
K+DP P E C R P+ P MS L P GL
Sbjct: 312 KRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAPGL 348
>gi|224994219 SH3-domain binding protein 2 isoform c [Homo sapiens]
Length = 589
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 94 KQDPKSPGFGECCIRAPSEPFEMSRRWLLPQPVGIGL 130
K+DP P E C R P+ P MS L P GL
Sbjct: 283 KRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAPGL 319
>gi|242332502 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 42 ASAYDTLMSQ-SFGVKNLKRVGIILQRGVLI----LMLCCFPCWA 81
+S +DT++++ G+ N +G++L +L+ L +CC CW+
Sbjct: 9 SSIWDTILTKHQEGIYNTICLGVLLGLPLLVIITLLFICCHCCWS 53
>gi|242332500 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 42 ASAYDTLMSQ-SFGVKNLKRVGIILQRGVLI----LMLCCFPCWA 81
+S +DT++++ G+ N +G++L +L+ L +CC CW+
Sbjct: 9 SSIWDTILTKHQEGIYNTICLGVLLGLPLLVIITLLFICCHCCWS 53
>gi|242332498 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 42 ASAYDTLMSQ-SFGVKNLKRVGIILQRGVLI----LMLCCFPCWA 81
+S +DT++++ G+ N +G++L +L+ L +CC CW+
Sbjct: 9 SSIWDTILTKHQEGIYNTICLGVLLGLPLLVIITLLFICCHCCWS 53
>gi|242332496 hypothetical protein LOC9674 [Homo sapiens]
Length = 99
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 42 ASAYDTLMSQ-SFGVKNLKRVGIILQRGVLI----LMLCCFPCWA 81
+S +DT++++ G+ N +G++L +L+ L +CC CW+
Sbjct: 9 SSIWDTILTKHQEGIYNTICLGVLLGLPLLVIITLLFICCHCCWS 53
>gi|170014705 SH3-domain binding protein 2 isoform a [Homo sapiens]
Length = 561
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 94 KQDPKSPGFGECCIRAPSEPFEMSRRWLLPQPVGIGL 130
K+DP P E C R P+ P MS L P GL
Sbjct: 255 KRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAPGL 291
>gi|170014703 SH3-domain binding protein 2 isoform a [Homo sapiens]
Length = 561
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 94 KQDPKSPGFGECCIRAPSEPFEMSRRWLLPQPVGIGL 130
K+DP P E C R P+ P MS L P GL
Sbjct: 255 KRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAPGL 291
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.142 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,109,295
Number of Sequences: 37866
Number of extensions: 318862
Number of successful extensions: 704
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 17
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.