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Search of human proteins with 239750956
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750956 PREDICTED: hypothetical protein XP_002347617 [Homo
sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750956 PREDICTED: hypothetical protein XP_002347617 [Homo ... 313 4e-86
gi|239745362 PREDICTED: hypothetical protein XP_002343447 [Homo ... 313 4e-86
gi|239755652 PREDICTED: hypothetical protein [Homo sapiens] 36 0.009
gi|239750190 PREDICTED: hypothetical protein [Homo sapiens] 36 0.009
gi|239744495 PREDICTED: hypothetical protein XP_002343166 [Homo ... 36 0.009
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 36 0.012
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 36 0.012
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 36 0.012
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.015
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 35 0.015
gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo s... 35 0.015
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 35 0.015
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 35 0.015
gi|239758169 PREDICTED: hypothetical protein [Homo sapiens] 35 0.020
gi|7706469 Kruppel-like factor [Homo sapiens] 35 0.020
gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens] 35 0.020
gi|22027541 programmed cell death 7 [Homo sapiens] 35 0.020
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 35 0.026
gi|91206406 hypothetical protein LOC642265 [Homo sapiens] 35 0.026
gi|239747126 PREDICTED: hypothetical protein XP_002343919 [Homo ... 35 0.026
gi|169174618 PREDICTED: family with sequence similarity 75, memb... 35 0.026
gi|239743732 PREDICTED: family with sequence similarity 75, memb... 35 0.026
gi|153791826 hypothetical protein LOC26165 [Homo sapiens] 35 0.026
gi|133892686 hypothetical protein LOC727830 [Homo sapiens] 35 0.026
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 35 0.026
gi|165377334 hypothetical protein LOC727905 [Homo sapiens] 35 0.026
gi|239743851 PREDICTED: hypothetical protein [Homo sapiens] 34 0.034
gi|239743848 PREDICTED: hypothetical protein [Homo sapiens] 34 0.034
gi|239743837 PREDICTED: hypothetical protein [Homo sapiens] 34 0.034
gi|239743815 PREDICTED: hypothetical protein [Homo sapiens] 34 0.034
>gi|239750956 PREDICTED: hypothetical protein XP_002347617 [Homo
sapiens]
Length = 139
Score = 313 bits (801), Expect = 4e-86
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MVLFFPGPCSFFAEDCTALSAWHGWPTASLYTWPLEDEASATLAFFWGQESAPSLTWCAP 60
MVLFFPGPCSFFAEDCTALSAWHGWPTASLYTWPLEDEASATLAFFWGQESAPSLTWCAP
Sbjct: 1 MVLFFPGPCSFFAEDCTALSAWHGWPTASLYTWPLEDEASATLAFFWGQESAPSLTWCAP 60
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPC 120
PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPC
Sbjct: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPC 120
Query: 121 LEHSLATCTWVTTCLSDLG 139
LEHSLATCTWVTTCLSDLG
Sbjct: 121 LEHSLATCTWVTTCLSDLG 139
>gi|239745362 PREDICTED: hypothetical protein XP_002343447 [Homo
sapiens]
Length = 139
Score = 313 bits (801), Expect = 4e-86
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MVLFFPGPCSFFAEDCTALSAWHGWPTASLYTWPLEDEASATLAFFWGQESAPSLTWCAP 60
MVLFFPGPCSFFAEDCTALSAWHGWPTASLYTWPLEDEASATLAFFWGQESAPSLTWCAP
Sbjct: 1 MVLFFPGPCSFFAEDCTALSAWHGWPTASLYTWPLEDEASATLAFFWGQESAPSLTWCAP 60
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPC 120
PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPC
Sbjct: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPC 120
Query: 121 LEHSLATCTWVTTCLSDLG 139
LEHSLATCTWVTTCLSDLG
Sbjct: 121 LEHSLATCTWVTTCLSDLG 139
>gi|239755652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 36.2 bits (82), Expect = 0.009
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 72 PSPGAPLPSPGAPLQHPSP---GAPLPGAFPHVEHPSLRAPLAWSTP 115
P PG+P+ S GA L P P GAP P P P+L +P +W P
Sbjct: 87 PPPGSPMASFGA-LATPDPPVGGAPAPALLPGQAPPALPSPQSWFAP 132
>gi|239750190 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 36.2 bits (82), Expect = 0.009
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 72 PSPGAPLPSPGAPLQHPSP---GAPLPGAFPHVEHPSLRAPLAWSTP 115
P PG+P+ S GA L P P GAP P P P+L +P +W P
Sbjct: 87 PPPGSPMASFGA-LATPDPPVGGAPAPALLPGQAPPALPSPQSWFAP 132
>gi|239744495 PREDICTED: hypothetical protein XP_002343166 [Homo
sapiens]
Length = 158
Score = 36.2 bits (82), Expect = 0.009
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 72 PSPGAPLPSPGAPLQHPSP---GAPLPGAFPHVEHPSLRAPLAWSTP 115
P PG+P+ S GA L P P GAP P P P+L +P +W P
Sbjct: 87 PPPGSPMASFGA-LATPDPPVGGAPAPALLPGQAPPALPSPQSWFAP 132
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 35.8 bits (81), Expect = 0.012
Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 13 AEDCTALSAWHGWPTASLYTWPLEDEASATLAFFWGQESAPSLTWCAPPFTWSTLHLGHP 72
A CT S H P+ +L WP + +L ++S P L T+
Sbjct: 12 AASCTLTSPLHPTPSEALSCWPSPPGEAYSLPELPFKKSKPFLPQSKQKADTETIGSSGG 71
Query: 73 SPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAP 109
S G PSP P P PG P F P L P
Sbjct: 72 SRG---PSPAHPWTTPQPGPPHQPGFNPASSPRLPLP 105
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 35.8 bits (81), Expect = 0.012
Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 13 AEDCTALSAWHGWPTASLYTWPLEDEASATLAFFWGQESAPSLTWCAPPFTWSTLHLGHP 72
A CT S H P+ +L WP + +L ++S P L T+
Sbjct: 12 AASCTLTSPLHPTPSEALSCWPSPPGEAYSLPELPFKKSKPFLPQSKQKADTETIGSSGG 71
Query: 73 SPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAP 109
S G PSP P P PG P F P L P
Sbjct: 72 SRG---PSPAHPWTTPQPGPPHQPGFNPASSPRLPLP 105
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 35.8 bits (81), Expect = 0.012
Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 13 AEDCTALSAWHGWPTASLYTWPLEDEASATLAFFWGQESAPSLTWCAPPFTWSTLHLGHP 72
A CT S H P+ +L WP + +L ++S P L T+
Sbjct: 12 AASCTLTSPLHPTPSEALSCWPSPPGEAYSLPELPFKKSKPFLPQSKQKADTETIGSSGG 71
Query: 73 SPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAP 109
S G PSP P P PG P F P L P
Sbjct: 72 SRG---PSPAHPWTTPQPGPPHQPGFNPASSPRLPLP 105
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 35.4 bits (80), Expect = 0.015
Identities = 26/64 (40%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 60 PPFTWSTLHLGHPSPGAPLPSPGAPLQH-PSPGAPLPGAFPHVEHPSL-RAPLAWSTPLL 117
PP L L P P AP PLQ PSP A PG P SL +PLA P
Sbjct: 503 PPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQA 562
Query: 118 APCL 121
P L
Sbjct: 563 PPVL 566
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 74 PGAPLPSPGAPLQHPSPGAPLPGAFPHVE--HPSLRAPLAWSTPLL 117
P P P +P P P AP P A P ++ P +AP A +TP L
Sbjct: 483 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPL 528
Score = 28.1 bits (61), Expect = 2.4
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 59 APPFTWSTLHLGHPSPGAP---LPSPG-APLQHPSPGAPLPGAFPHVEHPSLRAPLAWST 114
A P + +T LG P+ A LPSP +PL P P AP A P ++ P P ++
Sbjct: 359 ATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAP----PSPPAS 414
Query: 115 PLLAP 119
P L+P
Sbjct: 415 PPLSP 419
Score = 27.3 bits (59), Expect = 4.1
Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 59 APPFTWSTLHLGHPSPGAP------------LPSPGAPLQHPSPGAPLPGAFPHVEHPSL 106
+PP + L PSP AP P P P+Q P P P PS
Sbjct: 410 SPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQ 469
Query: 107 RAPLAWSTPLLAP 119
P + PL P
Sbjct: 470 APPSLAAPPLQVP 482
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 35.4 bits (80), Expect = 0.015
Identities = 26/64 (40%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 60 PPFTWSTLHLGHPSPGAPLPSPGAPLQH-PSPGAPLPGAFPHVEHPSL-RAPLAWSTPLL 117
PP L L P P AP PLQ PSP A PG P SL +PLA P
Sbjct: 464 PPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQA 523
Query: 118 APCL 121
P L
Sbjct: 524 PPVL 527
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 74 PGAPLPSPGAPLQHPSPGAPLPGAFPHVE--HPSLRAPLAWSTPLL 117
P P P +P P P AP P A P ++ P +AP A +TP L
Sbjct: 444 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPL 489
Score = 28.1 bits (61), Expect = 2.4
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 59 APPFTWSTLHLGHPSPGAP---LPSPG-APLQHPSPGAPLPGAFPHVEHPSLRAPLAWST 114
A P + +T LG P+ A LPSP +PL P P AP A P ++ P P ++
Sbjct: 320 ATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAP----PSPPAS 375
Query: 115 PLLAP 119
P L+P
Sbjct: 376 PPLSP 380
Score = 27.3 bits (59), Expect = 4.1
Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 59 APPFTWSTLHLGHPSPGAP------------LPSPGAPLQHPSPGAPLPGAFPHVEHPSL 106
+PP + L PSP AP P P P+Q P P P PS
Sbjct: 371 SPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQ 430
Query: 107 RAPLAWSTPLLAP 119
P + PL P
Sbjct: 431 APPSLAAPPLQVP 443
>gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo
sapiens]
Length = 159
Score = 35.4 bits (80), Expect = 0.015
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 70 GHPSPGA-PLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLL 117
G P PG P P G P P G P PG P P +R P+ P++
Sbjct: 85 GPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMM 133
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 35.4 bits (80), Expect = 0.015
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 59 APPFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGA--PLPGAFPHVEHPSLRAPLAWSTPL 116
+PP + + P P P +P P PG PL GA PHV HP L AP+A+
Sbjct: 6 SPPSSSAAAPAAEPGVTTEQPGPRSPPSSP-PGLEEPLDGADPHVPHPDL-APIAFF--- 60
Query: 117 LAPCLEHSLATCTW 130
CL + + W
Sbjct: 61 ---CLRQTTSPRNW 71
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 35.4 bits (80), Expect = 0.015
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 59 APPFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGA--PLPGAFPHVEHPSLRAPLAWSTPL 116
+PP + + P P P +P P PG PL GA PHV HP L AP+A+
Sbjct: 6 SPPSSSAAAPAAEPGVTTEQPGPRSPPSSP-PGLEEPLDGADPHVPHPDL-APIAFF--- 60
Query: 117 LAPCLEHSLATCTW 130
CL + + W
Sbjct: 61 ---CLRQTTSPRNW 71
>gi|239758169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 35.0 bits (79), Expect = 0.020
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 77 PLPSPGAPLQHPSPGAPLPGAFP----HVEHPSLRAPLAWSTPLLAPCLEHSL------- 125
P PSPG L P P P P P H P+L P W P L P L +L
Sbjct: 4 PWPSPGPSLVLPCPSVPWPCPHPALALHWSCPALALP--WPRPCLLPGLAFALPWPDPRP 61
Query: 126 -ATCTWVTTCLSDL 138
+ W TCL+ L
Sbjct: 62 TESMKWPWTCLAIL 75
Score = 32.3 bits (72), Expect = 0.13
Identities = 28/82 (34%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 61 PFTWSTLHLGH----PSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPL 116
P W GH PSP P P P L P PG L AF + P L W P
Sbjct: 99 PLLWPCSVFGHALCYPSPALPWPWPYHGLLLPWPGPTL--AFSTLALPFPDLALPWPCPT 156
Query: 117 LAPCLEH----SLATCTWVTTC 134
LA L + S T V +C
Sbjct: 157 LALALPYPGPGSALTLALVLSC 178
Score = 29.6 bits (65), Expect = 0.83
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 55 LTWCAPPFTWSTLHLGHPSPGAPLPSPGAPLQHPSPG 91
L W P +STL L P P P P L P PG
Sbjct: 129 LPWPGPTLAFSTLALPFPDLALPWPCPTLALALPYPG 165
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 35.0 bits (79), Expect = 0.020
Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 22/108 (20%)
Query: 10 SFFAEDCTALSAWHGWPTASLYTWPLEDEASATLAFFW-------GQESAPSLTWCAPPF 62
S FA C WP A + +D+ ++ L F G E+AP PP
Sbjct: 12 STFASPCRERGLQERWPRAEPESGGTDDDLNSVLDFILSMGLDGLGAEAAPEPP--PPP- 68
Query: 63 TWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPL 110
P P P PGAP P AP G + P L APL
Sbjct: 69 ---------PPPAFYYPEPGAP---PPYSAPAGGLVSELLRPELDAPL 104
>gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]
Length = 588
Score = 35.0 bits (79), Expect = 0.020
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 53 PSLTWCAPPFTWSTLHLGHPSPGAPL--PSPGAPLQHPSPGAPLPGAFPHVE 102
P + PP T ST P PG P+ P PG P P PGAP P P +E
Sbjct: 355 PPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFP---PPPGAPPPSLIPTIE 403
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 35.0 bits (79), Expect = 0.020
Identities = 23/62 (37%), Positives = 24/62 (38%), Gaps = 14/62 (22%)
Query: 60 PPFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAP----------LPGAFPHVEHPSLRAP 109
PPF G P P P P P AP P P P PG FP P L+ P
Sbjct: 4 PPFFGQ----GRPGPPPPQPPPPAPFGCPPPPLPSPAFPPPLPQRPGPFPGASAPFLQPP 59
Query: 110 LA 111
LA
Sbjct: 60 LA 61
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTP 115
P T S L P P P PL+HPSP P FPH H PLA S P
Sbjct: 173 PMTTSVSSLSASQP----PEPSLPLEHPSPEP--PALFPHPPHTP--DPLACSPP 219
>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
Length = 1347
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTP 115
P T S L P P P PL+HPSP P FPH H PLA S P
Sbjct: 173 PMTTSVSSLSASQP----PEPSLPLEHPSPEP--PALFPHPPHTP--DPLACSPP 219
>gi|239747126 PREDICTED: hypothetical protein XP_002343919 [Homo
sapiens]
Length = 185
Score = 34.7 bits (78), Expect = 0.026
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 24/79 (30%)
Query: 77 PLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLA-----PCLEHSLA----- 126
P PSPG L P P P P HP+L L WS P LA PCL LA
Sbjct: 4 PWPSPGPSLVLPCPSMPWP-----CPHPAL--ALHWSCPALALPWPWPCLLPGLAFALPW 56
Query: 127 -------TCTWVTTCLSDL 138
+ W TCL+ L
Sbjct: 57 PDPRPTESMKWPWTCLAIL 75
Score = 30.8 bits (68), Expect = 0.37
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 61 PFTWSTLHLGH----PSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPL 116
P W GH PSP P P P L P PG L AF + P L W P
Sbjct: 99 PLLWPCSVFGHALCYPSPALPWPWPYHGLLLPWPGHTL--AFSTLALPCPGLALPWPCPA 156
Query: 117 LA---PC 120
+A PC
Sbjct: 157 MALALPC 163
Score = 26.2 bits (56), Expect = 9.1
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 55 LTWCAPPFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGA 97
L W +STL L P P P P L P P P PG+
Sbjct: 129 LPWPGHTLAFSTLALPCPGLALPWPCPAMALALPCP-CPGPGS 170
>gi|169174618 PREDICTED: family with sequence similarity 75, member
A4 isoform 2 [Homo sapiens]
Length = 1272
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTP 115
P T S L P P P PL+HPSP P FPH H PLA S P
Sbjct: 98 PMTTSVSSLSASQP----PEPSLPLEHPSPEP--PALFPHPPHTP--DPLACSLP 144
>gi|239743732 PREDICTED: family with sequence similarity 75, member
A4 isoform 1 [Homo sapiens]
Length = 1361
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTP 115
P T S L P P P PL+HPSP P FPH H PLA S P
Sbjct: 187 PMTTSVSSLSASQP----PEPSLPLEHPSPEP--PALFPHPPHTP--DPLACSLP 233
>gi|153791826 hypothetical protein LOC26165 [Homo sapiens]
Length = 1347
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTP 115
P T S L P P P PL+HPSP P FPH H PLA S P
Sbjct: 173 PMTTSVSSLSASQP----PEPSLPLEHPSPEP--PALFPHPPHTP--DPLACSLP 219
>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
Length = 1347
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTP 115
P T S L P P P PL+HPSP P FPH H PLA S P
Sbjct: 173 PMTTSVSSLSASQP----PEPSLPLEHPSPEP--PALFPHPPHTP--DPLACSLP 219
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTP 115
P T S L P P P PL+HPSP P FPH H PLA S P
Sbjct: 173 PMTTSVSSLSASQP----PEPSLPLEHPSPEP--PALFPHPPHTP--DPLACSPP 219
>gi|165377334 hypothetical protein LOC727905 [Homo sapiens]
Length = 1347
Score = 34.7 bits (78), Expect = 0.026
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 61 PFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTP 115
P T S L P P P PL+HPSP P FPH H PLA S P
Sbjct: 173 PMTTSVSSLSASQP----PEPSLPLEHPSPEP--PALFPHPPHTP--DPLACSLP 219
>gi|239743851 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 34.3 bits (77), Expect = 0.034
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 24/79 (30%)
Query: 77 PLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLA-----PCLEHSLA----- 126
P PSPG L P P P P HP+L L WS P LA PCL LA
Sbjct: 4 PWPSPGPSLILPCPSMPWP-----CPHPAL--ALHWSCPALALPWPWPCLLPGLAFALPW 56
Query: 127 -------TCTWVTTCLSDL 138
+ W TCL+ L
Sbjct: 57 PDPRPTESMKWPWTCLAIL 75
Score = 30.8 bits (68), Expect = 0.37
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 55 LTWCAPPFTWSTLHLGHPSPGAPLPSPGAPLQHPSPG 91
L W P +STL L P P P P L P PG
Sbjct: 129 LPWPGPTLAFSTLALPFPGVALPWPCPALALALPYPG 165
Score = 30.4 bits (67), Expect = 0.48
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 69 LGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPCLEH----S 124
L +PSP P P P L P PG L AF + P L W P LA L + S
Sbjct: 111 LCYPSPALPWPWPYHGLLLPWPGPTL--AFSTLALPFPGVALPWPCPALALALPYPGPGS 168
Query: 125 LATCTWVTTC 134
T V +C
Sbjct: 169 ALTLALVLSC 178
Score = 26.6 bits (57), Expect = 7.0
Identities = 32/104 (30%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 33 WPLEDEASATLAFFWGQESAPSLTWCAPPFTWSTLHLG--------HPSPGAPLPSPGAP 84
WP A LA W S P+L A P+ W L G P P + P
Sbjct: 21 WPCPHPA---LALHW---SCPAL---ALPWPWPCLLPGLAFALPWPDPRPTESMKWPWTC 71
Query: 85 LQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPCLEHSLATC 128
L PG P P P+L L PLL PC A C
Sbjct: 72 LAILCPG---PILSPPCSGPALALALLLVLPLLWPCSVFGRALC 112
>gi|239743848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 34.3 bits (77), Expect = 0.034
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 24/79 (30%)
Query: 77 PLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLA-----PCLEHSLA----- 126
P PSPG L P P P P HP+L L WS P LA PCL LA
Sbjct: 4 PWPSPGPSLILPCPSMPWP-----CPHPAL--ALHWSCPALALPWPWPCLLPGLAFALPW 56
Query: 127 -------TCTWVTTCLSDL 138
+ W TCL+ L
Sbjct: 57 PDPRPTESMKWPWTCLAIL 75
Score = 30.8 bits (68), Expect = 0.37
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 55 LTWCAPPFTWSTLHLGHPSPGAPLPSPGAPLQHPSPG 91
L W P +STL L P P P P L P PG
Sbjct: 129 LPWPGPTLAFSTLALPFPGVALPWPCPALALALPYPG 165
Score = 30.4 bits (67), Expect = 0.48
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 69 LGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPCLEH----S 124
L +PSP P P P L P PG L AF + P L W P LA L + S
Sbjct: 111 LCYPSPALPWPWPYHGLLLPWPGPTL--AFSTLALPFPGVALPWPCPALALALPYPGPGS 168
Query: 125 LATCTWVTTC 134
T V +C
Sbjct: 169 ALTLALVLSC 178
Score = 26.6 bits (57), Expect = 7.0
Identities = 32/104 (30%), Positives = 36/104 (34%), Gaps = 20/104 (19%)
Query: 33 WPLEDEASATLAFFWGQESAPSLTWCAPPFTWSTLHLG--------HPSPGAPLPSPGAP 84
WP A LA W S P+L A P+ W L G P P + P
Sbjct: 21 WPCPHPA---LALHW---SCPAL---ALPWPWPCLLPGLAFALPWPDPRPTESMKWPWTC 71
Query: 85 LQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLAPCLEHSLATC 128
L PG P P P+L L PLL PC A C
Sbjct: 72 LAILCPG---PILSPPCSGPALALALLLVLPLLWPCSVFGRALC 112
>gi|239743837 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 34.3 bits (77), Expect = 0.034
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 77 PLPSPGAPLQHPSPGAPLPGAFP----HVEHPSLRAPLAWSTPLLAPCLEHSL------- 125
P PSPG L P P P P P H P+L P W P L P L +L
Sbjct: 4 PWPSPGPSLILPCPSMPWPCPHPALALHWSCPALALP--WPRPCLLPGLAFALPWPDPRP 61
Query: 126 -ATCTWVTTCLSDL 138
+ W TCL+ L
Sbjct: 62 TESMKWPWTCLAIL 75
Score = 30.4 bits (67), Expect = 0.48
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 55 LTWCAPPFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGA 97
L W P +STL L P P P P L P P P PG+
Sbjct: 129 LPWPGPTLAFSTLALPFPGLALPWPCPAMALALPCP-CPGPGS 170
Score = 28.5 bits (62), Expect = 1.8
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 69 LGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLA---PC 120
L +PSP P P P L P PG L AF + P L W P +A PC
Sbjct: 111 LCYPSPALPWPWPYHGLLLPWPGPTL--AFSTLALPFPGLALPWPCPAMALALPC 163
>gi|239743815 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 34.3 bits (77), Expect = 0.034
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 77 PLPSPGAPLQHPSPGAPLPGAFP----HVEHPSLRAPLAWSTPLLAPCLEHSL------- 125
P PSPG L P P P P P H P+L P W P L P L +L
Sbjct: 4 PWPSPGPSLILPCPSMPWPCPHPALALHWSCPALALP--WPRPCLLPGLAFALPWPDPRP 61
Query: 126 -ATCTWVTTCLSDL 138
+ W TCL+ L
Sbjct: 62 TESMRWPWTCLAIL 75
Score = 32.7 bits (73), Expect = 0.098
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 55 LTWCAPPFTWSTLHLGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVE 102
L W P +STL L P P P P L P P P PG+ H++
Sbjct: 129 LPWPGPTLAFSTLALPFPGLALPWPCPAMALALPCP-CPGPGSSLHLD 175
Score = 28.5 bits (62), Expect = 1.8
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 69 LGHPSPGAPLPSPGAPLQHPSPGAPLPGAFPHVEHPSLRAPLAWSTPLLA---PC 120
L +PSP P P P L P PG L AF + P L W P +A PC
Sbjct: 111 LCYPSPALPWPWPYHGLLLPWPGPTL--AFSTLALPFPGLALPWPCPAMALALPC 163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,155,873
Number of Sequences: 37866
Number of extensions: 535671
Number of successful extensions: 5935
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 426
Number of HSP's that attempted gapping in prelim test: 4251
Number of HSP's gapped (non-prelim): 1909
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.