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Search of human proteins with 239750935
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo
sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756405 PREDICTED: hypothetical protein [Homo sapiens] 297 2e-81
gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo ... 297 2e-81
gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo ... 297 2e-81
gi|169168272 PREDICTED: hypothetical protein [Homo sapiens] 168 2e-42
gi|169167956 PREDICTED: hypothetical protein [Homo sapiens] 168 2e-42
gi|169167416 PREDICTED: hypothetical protein [Homo sapiens] 168 2e-42
gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo ... 142 1e-34
gi|239751691 PREDICTED: hypothetical protein [Homo sapiens] 142 1e-34
gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo ... 142 1e-34
gi|157266266 WD repeat domain 86 [Homo sapiens] 30 0.91
gi|239756910 PREDICTED: hypothetical protein [Homo sapiens] 27 5.9
gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo ... 27 5.9
gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo ... 27 5.9
gi|20357515 macrophage scavenger receptor 1 isoform type 3 [Homo... 27 7.7
gi|148228925 X antigen family, member 1C isoform 1 [Homo sapiens] 27 7.7
gi|19747281 X antigen family, member 1D isoform 1c [Homo sapiens] 27 7.7
gi|9966899 X antigen family, member 1D isoform 1a [Homo sapiens] 27 7.7
gi|147906278 X antigen family, member 1C isoform 2 [Homo sapiens] 27 7.7
gi|148225604 X antigen family, member 1B isoform 1 [Homo sapiens] 27 7.7
gi|148232092 X antigen family, member 1B isoform 2 [Homo sapiens] 27 7.7
gi|147900714 X antigen family, member 1 isoform 2 [Homo sapiens] 27 7.7
gi|148231153 X antigen family, member 1 isoform 1 [Homo sapiens] 27 7.7
gi|208431810 hypothetical protein LOC51307 [Homo sapiens] 27 7.7
gi|7706139 hypothetical protein LOC51307 [Homo sapiens] 27 7.7
gi|147903922 X antigen family member 1E isoform 2 [Homo sapiens] 27 7.7
gi|148229505 X antigen family member 1E isoform 1 [Homo sapiens] 27 7.7
>gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 297 bits (761), Expect = 2e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC
Sbjct: 1 MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
Query: 61 RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120
RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA
Sbjct: 61 RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120
Query: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144
SSQMFSIPMMLLGCMHWLPKRDVG
Sbjct: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144
>gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo
sapiens]
Length = 144
Score = 297 bits (761), Expect = 2e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC
Sbjct: 1 MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
Query: 61 RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120
RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA
Sbjct: 61 RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120
Query: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144
SSQMFSIPMMLLGCMHWLPKRDVG
Sbjct: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144
>gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo
sapiens]
Length = 144
Score = 297 bits (761), Expect = 2e-81
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC
Sbjct: 1 MGYIRETTGIWKKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
Query: 61 RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120
RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA
Sbjct: 61 RPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAA 120
Query: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144
SSQMFSIPMMLLGCMHWLPKRDVG
Sbjct: 121 SSQMFSIPMMLLGCMHWLPKRDVG 144
>gi|169168272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 168 bits (425), Expect = 2e-42
Identities = 82/98 (83%), Positives = 89/98 (90%)
Query: 42 IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
+RMWS+KATTRSADMGEACRPAAA +GAT G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
Query: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139
GKKGM RAHSTALKS AASSQMFS+P+MLLGCMHWLP
Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
>gi|169167956 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 168 bits (425), Expect = 2e-42
Identities = 82/98 (83%), Positives = 89/98 (90%)
Query: 42 IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
+RMWS+KATTRSADMGEACRPAAA +GAT G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
Query: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139
GKKGM RAHSTALKS AASSQMFS+P+MLLGCMHWLP
Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
>gi|169167416 PREDICTED: hypothetical protein [Homo sapiens]
Length = 98
Score = 168 bits (425), Expect = 2e-42
Identities = 82/98 (83%), Positives = 89/98 (90%)
Query: 42 IRMWSIKATTRSADMGEACRPAAARSGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
+RMWS+KATTRSADMGEACRPAAA +GAT G+EH AA +TNSSLQVRRSR TWSVICRS
Sbjct: 1 MRMWSMKATTRSADMGEACRPAAASNGATCSGIEHWAALSTNSSLQVRRSRDTWSVICRS 60
Query: 102 GKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHWLP 139
GKKGM RAHSTALKS AASSQMFS+P+MLLGCMHWLP
Sbjct: 61 GKKGMLRAHSTALKSRRAASSQMFSMPIMLLGCMHWLP 98
>gi|239757181 PREDICTED: hypothetical protein XP_002345195 [Homo
sapiens]
Length = 129
Score = 142 bits (358), Expect = 1e-34
Identities = 78/124 (62%), Positives = 84/124 (67%)
Query: 18 MALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRGMEHC 77
MALRQ YSAESTC S STCSWK R WS+KAT RSA +G A RPAAA SGA RG C
Sbjct: 1 MALRQPYSAESTCRRPSLSTCSWKARTWSMKATARSAAIGAAWRPAAASSGAVCRGSAAC 60
Query: 78 AAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHW 137
AAF+T SSLQ+RRS ATWS SGKKG +RAHST LKS AASS S+P
Sbjct: 61 AAFSTKSSLQLRRSSATWSATGSSGKKGAWRAHSTVLKSSRAASSHTLSMPSTAPAAPPP 120
Query: 138 LPKR 141
PKR
Sbjct: 121 APKR 124
>gi|239751691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 142 bits (358), Expect = 1e-34
Identities = 78/124 (62%), Positives = 84/124 (67%)
Query: 18 MALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRGMEHC 77
MALRQ YSAESTC S STCSWK R WS+KAT RSA +G A RPAAA SGA RG C
Sbjct: 1 MALRQPYSAESTCRRPSLSTCSWKARTWSMKATARSAAIGAAWRPAAASSGAVCRGSAAC 60
Query: 78 AAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHW 137
AAF+T SSLQ+RRS ATWS SGKKG +RAHST LKS AASS S+P
Sbjct: 61 AAFSTKSSLQLRRSSATWSATGSSGKKGAWRAHSTVLKSSRAASSHTLSMPSTAPAAPPP 120
Query: 138 LPKR 141
PKR
Sbjct: 121 APKR 124
>gi|239746195 PREDICTED: hypothetical protein XP_002343673 [Homo
sapiens]
Length = 129
Score = 142 bits (358), Expect = 1e-34
Identities = 78/124 (62%), Positives = 84/124 (67%)
Query: 18 MALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRGMEHC 77
MALRQ YSAESTC S STCSWK R WS+KAT RSA +G A RPAAA SGA RG C
Sbjct: 1 MALRQPYSAESTCRRPSLSTCSWKARTWSMKATARSAAIGAAWRPAAASSGAVCRGSAAC 60
Query: 78 AAFNTNSSLQVRRSRATWSVICRSGKKGMFRAHSTALKSILAASSQMFSIPMMLLGCMHW 137
AAF+T SSLQ+RRS ATWS SGKKG +RAHST LKS AASS S+P
Sbjct: 61 AAFSTKSSLQLRRSSATWSATGSSGKKGAWRAHSTVLKSSRAASSHTLSMPSTAPAAPPP 120
Query: 138 LPKR 141
PKR
Sbjct: 121 APKR 124
>gi|157266266 WD repeat domain 86 [Homo sapiens]
Length = 376
Score = 29.6 bits (65), Expect = 0.91
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 43 RMWSIKATTRSADMGEACRPAAAR-SGATWRGMEHCAAFNTNSSLQVRRSRATWSVICRS 101
R+WS +AD G+ C S T+ +E AAF ++ +RR W V+
Sbjct: 40 RLWS------TAD-GQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRR----WDVLTGQ 88
Query: 102 GKKGMFRAHSTALKSILAASSQMFS 126
+ ++R H++ + IL A++Q+FS
Sbjct: 89 CLQ-VYRGHTSIVNRILVANNQLFS 112
>gi|239756910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 26.9 bits (58), Expect = 5.9
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 14 VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73
++ M R +Y A+ + SF S + +K R D+G P A R T RG
Sbjct: 96 ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153
>gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo
sapiens]
Length = 155
Score = 26.9 bits (58), Expect = 5.9
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 14 VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73
++ M R +Y A+ + SF S + +K R D+G P A R T RG
Sbjct: 96 ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153
>gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo
sapiens]
Length = 155
Score = 26.9 bits (58), Expect = 5.9
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 14 VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73
++ M R +Y A+ + SF S + +K R D+G P A R T RG
Sbjct: 96 ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153
>gi|20357515 macrophage scavenger receptor 1 isoform type 3 [Homo
sapiens]
Length = 388
Score = 26.6 bits (57), Expect = 7.7
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 12 KKVNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEAC 60
K T++ ++ E C S KIR W +A + S D G C
Sbjct: 338 KGSGNTLSTGPIWLNEVFCFGRESSIEECKIRQWGTRACSHSEDAGVTC 386
>gi|148228925 X antigen family, member 1C isoform 1 [Homo sapiens]
Length = 160
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 93 GILHLGSRQKKIRIQLRSQCATWKVICKS 121
>gi|19747281 X antigen family, member 1D isoform 1c [Homo sapiens]
Length = 160
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 93 GILHLGSRQKKIRIQLRSQCATWKVICKS 121
>gi|9966899 X antigen family, member 1D isoform 1a [Homo sapiens]
Length = 146
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 79 GILHLGSRQKKIRIQLRSQCATWKVICKS 107
>gi|147906278 X antigen family, member 1C isoform 2 [Homo sapiens]
Length = 146
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 79 GILHLGSRQKKIRIQLRSQCATWKVICKS 107
>gi|148225604 X antigen family, member 1B isoform 1 [Homo sapiens]
Length = 160
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 93 GILHLGSRQKKIRIQLRSQCATWKVICKS 121
>gi|148232092 X antigen family, member 1B isoform 2 [Homo sapiens]
Length = 146
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 79 GILHLGSRQKKIRIQLRSQCATWKVICKS 107
>gi|147900714 X antigen family, member 1 isoform 2 [Homo sapiens]
Length = 146
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 79 GILHLGSRQKKIRIQLRSQCATWKVICKS 107
>gi|148231153 X antigen family, member 1 isoform 1 [Homo sapiens]
Length = 160
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 93 GILHLGSRQKKIRIQLRSQCATWKVICKS 121
>gi|208431810 hypothetical protein LOC51307 [Homo sapiens]
Length = 392
Score = 26.6 bits (57), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 68 GATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKG 105
GA+WRG+ HC+ SL + S+ R +G
Sbjct: 47 GASWRGLPHCSCAEFQDSLNFSYHPSGLSLHLRPPSRG 84
>gi|7706139 hypothetical protein LOC51307 [Homo sapiens]
Length = 392
Score = 26.6 bits (57), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 68 GATWRGMEHCAAFNTNSSLQVRRSRATWSVICRSGKKG 105
GA+WRG+ HC+ SL + S+ R +G
Sbjct: 47 GASWRGLPHCSCAEFQDSLNFSYHPSGLSLHLRPPSRG 84
>gi|147903922 X antigen family member 1E isoform 2 [Homo sapiens]
Length = 146
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 79 GILHLGSRQKKIRIQLRSQCATWKVICKS 107
>gi|148229505 X antigen family member 1E isoform 1 [Homo sapiens]
Length = 160
Score = 26.6 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 73 GMEHCAAFNTNSSLQVRRSRATWSVICRS 101
G+ H + +Q+R ATW VIC+S
Sbjct: 93 GILHLGSRQKKIRIQLRSQCATWKVICKS 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.126 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,918,890
Number of Sequences: 37866
Number of extensions: 168287
Number of successful extensions: 511
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 26
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.