Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239750244
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750244 PREDICTED: hypothetical protein [Homo sapiens]
(162 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755728 PREDICTED: hypothetical protein [Homo sapiens] 329 7e-91
gi|239750244 PREDICTED: hypothetical protein [Homo sapiens] 329 7e-91
gi|239744544 PREDICTED: hypothetical protein [Homo sapiens] 329 7e-91
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 33 0.082
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 33 0.082
gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo ... 32 0.24
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|31442761 amiloride-sensitive cation channel 5, intestinal [Ho... 30 1.2
gi|50428935 BPY2 interacting protein 1 [Homo sapiens] 29 1.6
gi|239756245 PREDICTED: hypothetical protein [Homo sapiens] 29 2.0
gi|239750783 PREDICTED: hypothetical protein XP_002347553 [Homo ... 29 2.0
gi|239745091 PREDICTED: hypothetical protein XP_002343358 [Homo ... 29 2.0
gi|82546847 hypothetical protein LOC9907 [Homo sapiens] 28 4.5
gi|4503383 dopamine receptor D1 [Homo sapiens] 27 5.9
gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member... 27 5.9
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 27 7.7
gi|8923789 FEV (ETS oncogene family) [Homo sapiens] 27 7.7
>gi|239755728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 329 bits (843), Expect = 7e-91
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MPLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALA 60
MPLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALA
Sbjct: 1 MPLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALA 60
Query: 61 APVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLARGAKQLV 120
APVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLARGAKQLV
Sbjct: 61 APVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLARGAKQLV 120
Query: 121 VQEALLMILRLLSYFSWFTPMTNMGASAEGAEMMTLLAPPCK 162
VQEALLMILRLLSYFSWFTPMTNMGASAEGAEMMTLLAPPCK
Sbjct: 121 VQEALLMILRLLSYFSWFTPMTNMGASAEGAEMMTLLAPPCK 162
>gi|239750244 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 329 bits (843), Expect = 7e-91
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MPLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALA 60
MPLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALA
Sbjct: 1 MPLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALA 60
Query: 61 APVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLARGAKQLV 120
APVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLARGAKQLV
Sbjct: 61 APVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLARGAKQLV 120
Query: 121 VQEALLMILRLLSYFSWFTPMTNMGASAEGAEMMTLLAPPCK 162
VQEALLMILRLLSYFSWFTPMTNMGASAEGAEMMTLLAPPCK
Sbjct: 121 VQEALLMILRLLSYFSWFTPMTNMGASAEGAEMMTLLAPPCK 162
>gi|239744544 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 329 bits (843), Expect = 7e-91
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MPLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALA 60
MPLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALA
Sbjct: 1 MPLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALA 60
Query: 61 APVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLARGAKQLV 120
APVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLARGAKQLV
Sbjct: 61 APVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLARGAKQLV 120
Query: 121 VQEALLMILRLLSYFSWFTPMTNMGASAEGAEMMTLLAPPCK 162
VQEALLMILRLLSYFSWFTPMTNMGASAEGAEMMTLLAPPCK
Sbjct: 121 VQEALLMILRLLSYFSWFTPMTNMGASAEGAEMMTLLAPPCK 162
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 33.5 bits (75), Expect = 0.082
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 2 PLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALAA 61
P RGP C LA R VRS + TR P +FP G TLP++L A
Sbjct: 270 PPRGPVGVCRPQVAQRQRLA---RVCVRSLPGNRRLATRSC-PAAFPLQGGATLPSSLPA 325
Query: 62 P 62
P
Sbjct: 326 P 326
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 33.5 bits (75), Expect = 0.082
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 2 PLRGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALAA 61
P RGP C LA R VRS + TR P +FP G TLP++L A
Sbjct: 240 PPRGPVGVCRPQVAQRQRLA---RVCVRSLPGNRRLATRSC-PAAFPLQGGATLPSSLPA 295
Query: 62 P 62
P
Sbjct: 296 P 296
>gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo
sapiens]
Length = 336
Score = 32.0 bits (71), Expect = 0.24
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 4 RGPSDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALAAP 62
RGP C LA R VRS + TR P +FP G TLP++L AP
Sbjct: 219 RGPVGVCRPQVAQRQRLA---RVCVRSLPGNRRLATRSC-PAAFPLQGGATLPSSLPAP 273
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 29.6 bits (65), Expect = 1.2
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 16 MSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALAA--PVEAGMMFWRAP 73
M+S+L FSR ST + A S P +SG P+A A P ++G W +P
Sbjct: 1 MASFL--FSRASGVSTPSGSGWASSSASGASTPSNSGWASPSASGASIPSDSG---WASP 55
Query: 74 RPSRHSFPEGPSTVFWVAVMA-WTVVMSPS--TIPKLSW 109
S S PS W + A W + S S P SW
Sbjct: 56 SASGAS---TPSNSGWASFSASWASIPSDSGWASPSASW 91
>gi|31442761 amiloride-sensitive cation channel 5, intestinal [Homo
sapiens]
Length = 505
Score = 29.6 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 97 VVMSPSTIPKLSWMTLARGAKQLVVQEALLMILRLLSYFSWFT 139
+V + S I ++ W+ + G+ LV + + +RLL+YF+W T
Sbjct: 53 IVQNRSKIRRVLWLVVVLGSVSLVTWQ---IYIRLLNYFTWPT 92
>gi|50428935 BPY2 interacting protein 1 [Homo sapiens]
Length = 1059
Score = 29.3 bits (64), Expect = 1.6
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 59 LAAPVEAGMMFWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIPKLSWMTLAR 114
L P G F R RP + FP G + AV +TV+++ + PK S+ L R
Sbjct: 227 LEPPTSGG--FLRLGRPCCYIFPGGLGDAAFFAVNGFTVLVNGGSNPKSSFWKLVR 280
>gi|239756245 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 28.9 bits (63), Expect = 2.0
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 66 GMMFWRAPRPSRHSFPEGPST----VFWVAVMAWTVVM 99
G ++W A +P + +P GP T V +++ AW +++
Sbjct: 186 GYVYWVAQKPMKMGYPPGPWTIMKMVMGLSIAAWGIIV 223
>gi|239750783 PREDICTED: hypothetical protein XP_002347553 [Homo
sapiens]
Length = 235
Score = 28.9 bits (63), Expect = 2.0
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 66 GMMFWRAPRPSRHSFPEGPST----VFWVAVMAWTVVM 99
G ++W A +P + +P GP T V +++ AW +++
Sbjct: 186 GYVYWVAQKPMKMGYPPGPWTIMKMVMGLSIAAWGIIV 223
>gi|239745091 PREDICTED: hypothetical protein XP_002343358 [Homo
sapiens]
Length = 216
Score = 28.9 bits (63), Expect = 2.0
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 66 GMMFWRAPRPSRHSFPEGPST----VFWVAVMAWTVVM 99
G ++W A +P + +P GP T V +++ AW +++
Sbjct: 167 GYVYWVAQKPMKMGYPPGPWTIMKMVMGLSIAAWGIIV 204
>gi|82546847 hypothetical protein LOC9907 [Homo sapiens]
Length = 807
Score = 27.7 bits (60), Expect = 4.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 81 PEGPSTVFWVAVMAWTVVMSPSTI 104
PEGPS + VMA VV+SP T+
Sbjct: 145 PEGPSLRHLLPVMAKVVVLSPGTL 168
>gi|4503383 dopamine receptor D1 [Homo sapiens]
Length = 446
Score = 27.3 bits (59), Expect = 5.9
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 69 FWRAPRPSRHSFPEGPSTVFWVAVMAWTVVMSPSTIP-KLSW 109
+W P R+ P F + +AWT+ + S IP +LSW
Sbjct: 122 YWAISSPFRYERKMTPKAAFILISVAWTLSVLISFIPVQLSW 163
>gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member 2
[Homo sapiens]
Length = 1545
Score = 27.3 bits (59), Expect = 5.9
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 83 GPSTVFWVAVMAWTVVMSPSTIPK---LSWMTLARGAKQLVVQEALLMILRLLSYFSWFT 139
GPS + V VM + ++ K + + K+L + +L +++L YF+W
Sbjct: 460 GPSVLAGVGVMVLVIPINAILSTKSKTIQVKNMKNKDKRLKIMNEILSGIKILKYFAWEP 519
Query: 140 PMTNMGASAEGAEMMTLLA 158
+ + E+ LLA
Sbjct: 520 SFRDQVQNLRKKELKNLLA 538
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 26.9 bits (58), Expect = 7.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 72 APRPSRHSFPEGPSTVFWVAVMAW 95
APR R FP GP+ W AW
Sbjct: 110 APRLPRARFPGGPAAAAWAGDEAW 133
>gi|8923789 FEV (ETS oncogene family) [Homo sapiens]
Length = 238
Score = 26.9 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 44 PVSFPFSSGMTLPTALAAPVEAGMMFWRAPRPS 76
P+ FP S + L A A AG +W P P+
Sbjct: 169 PLPFPGLSKLNLMAASAGVAPAGFSYWPGPGPA 201
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.131 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,161,344
Number of Sequences: 37866
Number of extensions: 251627
Number of successful extensions: 760
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 18
length of query: 162
length of database: 18,247,518
effective HSP length: 94
effective length of query: 68
effective length of database: 14,688,114
effective search space: 998791752
effective search space used: 998791752
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.