Guide to the Human Genome
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Name: LOC100291449 Sequence: fasta or formatted (177aa) NCBI GI: 239750004
Description:

PREDICTED: hypothetical protein XP_002347251

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         12           1
 C cysteine            1.7          3           1
 D aspartate           3.4          6           1
 E glutamate           3.4          6           1
 F phenylalanine       5.1          9           1
 G glycine             6.8         12           1
 H histidine           2.8          5           2
 I isoleucine          9.0         16           3
 K lysine              2.3          4           2
 L leucine            14.7         26           2
 M methionine          1.1          2           1
 N asparagine          4.0          7           2
 P proline             8.5         15           1
 Q glutamine           7.3         13           3
 R arginine            7.3         13           2
 S serine              5.6         10           2
 T threonine           1.1          2           1
 V valine              7.3         13           3
 W tryptophan          1.7          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347251 
LOC100289009          1.000   PREDICTED: hypothetical protein XP_002343116 
ZNF337                0.024   zinc finger protein 337 
ZFHX3                 0.015   AT-binding transcription factor 1 
LOC100291593          0.012   PREDICTED: similar to hCG2012845 
LOC100289945          0.012   PREDICTED: hypothetical protein XP_002346487 
LOC100288913          0.012   PREDICTED: hypothetical protein XP_002342331 
LOC100293050          0.012   PREDICTED: hypothetical protein 
LOC100130667          0.012   PREDICTED: hypothetical protein 
LOC100289982          0.012   PREDICTED: hypothetical protein XP_002347304 
LOC100130667          0.012   PREDICTED: hypothetical protein 
LOC100288634          0.012   PREDICTED: hypothetical protein XP_002343172 
LOC100130667          0.012   PREDICTED: hypothetical protein 
WDR24                 0.012   WD repeat domain 24 
DGKH                  0.006   diacylglycerol kinase, eta isoform 1 
DGKH                  0.006   diacylglycerol kinase, eta isoform 2 
GAL3ST3               0.006   galactose-3-O-sulfotransferase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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