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Search of human proteins with 117938297
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117938297 UBX domain protein 2B [Homo sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117938297 UBX domain protein 2B [Homo sapiens] 656 0.0
gi|20149635 p47 protein isoform a [Homo sapiens] 311 4e-85
gi|33286434 p47 protein isoform c [Homo sapiens] 287 1e-77
gi|29568099 p47 protein isoform b [Homo sapiens] 276 2e-74
gi|33457320 UBX domain containing 4 [Homo sapiens] 149 4e-36
gi|116734689 socius isoform 3 [Homo sapiens] 48 1e-05
gi|116734681 socius isoform 1 [Homo sapiens] 48 1e-05
gi|116734679 socius isoform 2 [Homo sapiens] 48 1e-05
gi|24307965 UBX domain containing 2 [Homo sapiens] 33 0.27
gi|21361517 UBX domain protein 1 [Homo sapiens] 33 0.27
gi|117938330 l(3)mbt-like isoform II [Homo sapiens] 33 0.46
gi|18702331 OTU domain containing 7A [Homo sapiens] 31 1.7
gi|148612818 protein kinase, cGMP-dependent, type I isoform 1 [H... 30 3.0
gi|10835242 protein kinase, cGMP-dependent, type I isoform 2 [Ho... 30 3.0
gi|153945755 zinc finger protein 608 [Homo sapiens] 30 3.0
gi|12545408 RAS p21 protein activator 2 [Homo sapiens] 30 3.0
gi|108860697 zinc finger protein 592 [Homo sapiens] 30 3.0
gi|19923475 tRNA methyltransferase 6 [Homo sapiens] 30 3.9
gi|55741632 fibronectin type III and SPRY domain containing 2 [H... 29 5.1
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens] 29 6.6
gi|194440660 topoisomerase (DNA) II binding protein 1 [Homo sapi... 29 6.6
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap... 29 6.6
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ... 29 6.6
gi|4506885 semenogelin II precursor [Homo sapiens] 28 8.7
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 28 8.7
gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens] 28 8.7
gi|74229025 membralin isoform 1 [Homo sapiens] 28 8.7
gi|15529970 membralin isoform 2 [Homo sapiens] 28 8.7
>gi|117938297 UBX domain protein 2B [Homo sapiens]
Length = 331
Score = 656 bits (1693), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MAEGGGPEPGEQERRSSGPRPPSARDLQLALAELYEDEVKCKSSKSNRPKATVFKSPRTP 60
MAEGGGPEPGEQERRSSGPRPPSARDLQLALAELYEDEVKCKSSKSNRPKATVFKSPRTP
Sbjct: 1 MAEGGGPEPGEQERRSSGPRPPSARDLQLALAELYEDEVKCKSSKSNRPKATVFKSPRTP 60
Query: 61 PQRFYSSEHEYSGLNIVRPSTGKIVNELFKEAREHGAVPLNEATRASGDDKSKSFTGGGY 120
PQRFYSSEHEYSGLNIVRPSTGKIVNELFKEAREHGAVPLNEATRASGDDKSKSFTGGGY
Sbjct: 61 PQRFYSSEHEYSGLNIVRPSTGKIVNELFKEAREHGAVPLNEATRASGDDKSKSFTGGGY 120
Query: 121 RLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEI 180
RLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEI
Sbjct: 121 RLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEI 180
Query: 181 PLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEED 240
PLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEED
Sbjct: 181 PLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEED 240
Query: 241 KSILNAVVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRNFIVQSRPEFAALDFIL 300
KSILNAVVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRNFIVQSRPEFAALDFIL
Sbjct: 241 KSILNAVVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRNFIVQSRPEFAALDFIL 300
Query: 301 VTSFPNKELTDESLTLLEADILNTVLLQQLK 331
VTSFPNKELTDESLTLLEADILNTVLLQQLK
Sbjct: 301 VTSFPNKELTDESLTLLEADILNTVLLQQLK 331
>gi|20149635 p47 protein isoform a [Homo sapiens]
Length = 370
Score = 311 bits (798), Expect = 4e-85
Identities = 171/353 (48%), Positives = 235/353 (66%), Gaps = 32/353 (9%)
Query: 10 GEQERRSSGPRPPSARDLQLALAELYED-----------EVKCKSSKSNRP---KATVFK 55
G +E R+ + DLQ+ALA YED S+ P + T F+
Sbjct: 17 GAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFR 76
Query: 56 S---------PRTPPQRFYSSEHEYSGLNIVRP----STGKIVNELFKEAREHGAVPLNE 102
QRFY+ E SG IV P S ++V++LFK A+EHGAV +
Sbjct: 77 DLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVER 136
Query: 103 ATRASGD-DKSKSFTGGGYRLGSSFCKRSEYIYGENQL---QDVQILLKLWSNGFSLDDG 158
T++ G+ K + F GGGYRLG++ + S Y+ GE + QDV ++LKLW +GFSLD+G
Sbjct: 137 VTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNG 196
Query: 159 ELRPYNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGE 218
ELR Y +P+NAQFLES++RGE+P EL+RL HGGQVNLDMEDH+D++++KP+ FKAF+GE
Sbjct: 197 ELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGE 256
Query: 219 GQKLGSLTPEIVSTPSSPEE-EDKSILNAVVLIDDSVPTTKIQIRLADGSRLIQRFNSTH 277
GQKLGS P+++ST S ++ E+++ ++ +LID+S PTT IQIRLADG RL+Q+FN +H
Sbjct: 257 GQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSH 316
Query: 278 RILDVRNFIVQSRPEFAALDFILVTSFPNKELTDESLTLLEADILNTVLLQQL 330
RI D+R FIV +RP AA FIL+T+FPNKEL DES TL EA++LN V++Q+L
Sbjct: 317 RISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 369
>gi|33286434 p47 protein isoform c [Homo sapiens]
Length = 259
Score = 287 bits (734), Expect = 1e-77
Identities = 140/244 (57%), Positives = 192/244 (78%), Gaps = 5/244 (2%)
Query: 92 AREHGAVPLNEATRASGD-DKSKSFTGGGYRLGSSFCKRSEYIYGENQL---QDVQILLK 147
A+EHGAV + T++ G+ K + F GGGYRLG++ + S Y+ GE + QDV ++LK
Sbjct: 15 AKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLK 74
Query: 148 LWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQEYIK 207
LW +GFSLD+GELR Y +P+NAQFLES++RGE+P EL+RL HGGQVNLDMEDH+D++++K
Sbjct: 75 LWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVK 134
Query: 208 PRLRFKAFSGEGQKLGSLTPEIVSTPSSPEE-EDKSILNAVVLIDDSVPTTKIQIRLADG 266
P+ FKAF+GEGQKLGS P+++ST S ++ E+++ ++ +LID+S PTT IQIRLADG
Sbjct: 135 PKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADG 194
Query: 267 SRLIQRFNSTHRILDVRNFIVQSRPEFAALDFILVTSFPNKELTDESLTLLEADILNTVL 326
RL+Q+FN +HRI D+R FIV +RP AA FIL+T+FPNKEL DES TL EA++LN V+
Sbjct: 195 GRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVI 254
Query: 327 LQQL 330
+Q+L
Sbjct: 255 VQRL 258
>gi|29568099 p47 protein isoform b [Homo sapiens]
Length = 339
Score = 276 bits (706), Expect = 2e-74
Identities = 157/349 (44%), Positives = 214/349 (61%), Gaps = 55/349 (15%)
Query: 10 GEQERRSSGPRPPSARDLQLALAELYED-----------EVKCKSSKSNRP---KATVFK 55
G +E R+ + DLQ+ALA YED S+ P + T F+
Sbjct: 17 GAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFR 76
Query: 56 S---------PRTPPQRFYSSEHEYSGLNIVRP----STGKIVNELFKEAREHGAVPLNE 102
QRFY+ E SG IV P S ++V++LFK A+EHGAV +
Sbjct: 77 DLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVER 136
Query: 103 ATRASGDDKSKSFTGGGYRLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRP 162
T++ G E V ++LKLW +GFSLD+GELR
Sbjct: 137 VTKSPG---------------------------ETSKPRVHVVLKLWKSGFSLDNGELRS 169
Query: 163 YNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKL 222
Y +P+NAQFLES++RGE+P EL+RL HGGQVNLDMEDH+D++++KP+ FKAF+GEGQKL
Sbjct: 170 YQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKL 229
Query: 223 GSLTPEIVSTPSSPEE-EDKSILNAVVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILD 281
GS P+++ST S ++ E+++ ++ +LID+S PTT IQIRLADG RL+Q+FN +HRI D
Sbjct: 230 GSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISD 289
Query: 282 VRNFIVQSRPEFAALDFILVTSFPNKELTDESLTLLEADILNTVLLQQL 330
+R FIV +RP AA FIL+T+FPNKEL DES TL EA++LN V++Q+L
Sbjct: 290 IRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 338
>gi|33457320 UBX domain containing 4 [Homo sapiens]
Length = 259
Score = 149 bits (375), Expect = 4e-36
Identities = 80/202 (39%), Positives = 133/202 (65%), Gaps = 2/202 (0%)
Query: 130 SEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVH 189
S+ + Q + V + +KLW NGF+++D + R Y++ + QFL S+K+GE+P ELQ +
Sbjct: 49 SKCVSPAEQKKQVDVNIKLWKNGFTVND-DFRSYSDGASQQFLNSIKKGELPSELQGIFD 107
Query: 190 GGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAVVL 249
+V++ +ED +++ + + F+ FSG+G +LGS TP+IVS + E E+K+ L+AV L
Sbjct: 108 KEEVDVKVEDKKNEICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNIEVENKNNLSAVPL 167
Query: 250 IDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRNFIVQSRPEFAALDFILVTSFPNKEL 309
++ P T IQI LA+G R++Q+FN THR+ +++FI + + + F L T+ P L
Sbjct: 168 -NNLEPITNIQIWLANGKRIVQKFNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRL 226
Query: 310 TDESLTLLEADILNTVLLQQLK 331
DE+LTL EAD+ N V++Q+L+
Sbjct: 227 LDETLTLEEADLQNAVIIQRLQ 248
>gi|116734689 socius isoform 3 [Homo sapiens]
Length = 400
Score = 47.8 bits (112), Expect = 1e-05
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 144 ILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQ 203
I LKL+ NG + DG +P+ +P+ + L + G P ELQRL G V + D ++Q
Sbjct: 113 IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNG-VPFKVSDLRNQ 171
Query: 204 EYIKPRLRFKAFSGEGQKLG 223
Y++ L F GEG+ +G
Sbjct: 172 VYLEDGL--DPFPGEGRVVG 189
>gi|116734681 socius isoform 1 [Homo sapiens]
Length = 487
Score = 47.8 bits (112), Expect = 1e-05
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 144 ILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQ 203
I LKL+ NG + DG +P+ +P+ + L + G P ELQRL G V + D ++Q
Sbjct: 200 IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNG-VPFKVSDLRNQ 258
Query: 204 EYIKPRLRFKAFSGEGQKLG 223
Y++ L F GEG+ +G
Sbjct: 259 VYLEDGL--DPFPGEGRVVG 276
>gi|116734679 socius isoform 2 [Homo sapiens]
Length = 520
Score = 47.8 bits (112), Expect = 1e-05
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 144 ILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQ 203
I LKL+ NG + DG +P+ +P+ + L + G P ELQRL G V + D ++Q
Sbjct: 233 IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNG-VPFKVSDLRNQ 291
Query: 204 EYIKPRLRFKAFSGEGQKLG 223
Y++ L F GEG+ +G
Sbjct: 292 VYLEDGL--DPFPGEGRVVG 309
>gi|24307965 UBX domain containing 2 [Homo sapiens]
Length = 508
Score = 33.5 bits (75), Expect = 0.27
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 258 KIQIRLADGSRLIQRFNSTHRILDVRNFIVQSRPEFAALDFILVTSFPNKELTDE 312
+IQ RL DGS +F S + + R F Q+ +F L T FP +E T E
Sbjct: 321 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYG-NFSLATMFPRREFTKE 374
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 33.5 bits (75), Expect = 0.27
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 211 RFKAFSGE-GQKLGSLTPEIVSTPSSPEEEDKSILNAVVLIDDSVPTTKIQIRLADGSRL 269
R K + G G + + PE PSSP +E + +IQ+RL DG+ L
Sbjct: 175 RAKKYGGSVGSQPPPVAPEPGPVPSSPSQEPPT--------KREYDQCRIQVRLPDGTSL 226
Query: 270 IQRFNSTHRILDVRNFIVQSRPE 292
Q F + ++ VR ++ R E
Sbjct: 227 TQTFRAREQLAAVRLYVELHRGE 249
>gi|117938330 l(3)mbt-like isoform II [Homo sapiens]
Length = 738
Score = 32.7 bits (73), Expect = 0.46
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 32 AELYEDEVKCKSSKSNRPKATVFKS--PRTPPQRFY 65
A L++DEV+CK +R TV K+ R PPQR +
Sbjct: 702 ARLFKDEVRCKCRVGDRAGVTVLKTAGSRCPPQRHF 737
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 30.8 bits (68), Expect = 1.7
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 2 AEGGGPEPGEQERRSS--GPRP------PSARDLQLALAELYEDEVKCKSSKSNRPKATV 53
A GG PG RR+S GP P P+ + + A DE + + RP AT
Sbjct: 738 AAGGTASPGGGARRASASGPVPGRSPPAPARQSVIHVQASGARDEACAPAVGALRPCATY 797
Query: 54 FKSPRTPPQRFYSSEHEYSGLNIVRPSTGKIVNELFKEARE-HGAVPLNEATRASGDDKS 112
+ R+ + YS R + + VN + AR GA+P T + + KS
Sbjct: 798 PQQNRSLSSQSYSP---------ARAAALRTVNTVESLARAVPGALPGAAGTAGAAEHKS 848
Query: 113 KSFTGG 118
+++T G
Sbjct: 849 QTYTNG 854
>gi|148612818 protein kinase, cGMP-dependent, type I isoform 1 [Homo
sapiens]
Length = 671
Score = 30.0 bits (66), Expect = 3.0
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 125 SFCKRSEYIYGENQL-QDVQILLKLWSNG---FSLDDGELRPYNEPTNAQFLESVKRGEI 180
+FC EY+ E L + I WS G + L G P++ P + + RG
Sbjct: 517 TFCGTPEYVAPEIILNKGHDISADYWSLGILMYELLTGS-PPFSGPDPMKTYNIILRGID 575
Query: 181 PLELQRLVHGGQVNLDMEDHQDQ------------EYIKPRLRFKAFSGEGQKLGSLTPE 228
+E + + NL + +D + I+ F+ F+ EG + G+LTP
Sbjct: 576 MIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDIQKHKWFEGFNWEGLRKGTLTPP 635
Query: 229 IVSTPSSPEE 238
I+ + +SP +
Sbjct: 636 IIPSVASPTD 645
>gi|10835242 protein kinase, cGMP-dependent, type I isoform 2 [Homo
sapiens]
Length = 686
Score = 30.0 bits (66), Expect = 3.0
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 125 SFCKRSEYIYGENQL-QDVQILLKLWSNG---FSLDDGELRPYNEPTNAQFLESVKRGEI 180
+FC EY+ E L + I WS G + L G P++ P + + RG
Sbjct: 532 TFCGTPEYVAPEIILNKGHDISADYWSLGILMYELLTGS-PPFSGPDPMKTYNIILRGID 590
Query: 181 PLELQRLVHGGQVNLDMEDHQDQ------------EYIKPRLRFKAFSGEGQKLGSLTPE 228
+E + + NL + +D + I+ F+ F+ EG + G+LTP
Sbjct: 591 MIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDIQKHKWFEGFNWEGLRKGTLTPP 650
Query: 229 IVSTPSSPEE 238
I+ + +SP +
Sbjct: 651 IIPSVASPTD 660
>gi|153945755 zinc finger protein 608 [Homo sapiens]
Length = 1512
Score = 30.0 bits (66), Expect = 3.0
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 11 EQERRSSGPRPPSARDLQLALAELYEDEVKCKSSKSNRPKATVFKSPRTP 60
EQ+ +G R R +L L EL ++E K K N P AT+ K+P TP
Sbjct: 1116 EQKMAQTG-RGDCERKSELPLKELGKEETKQK----NMPSATISKAPSTP 1160
>gi|12545408 RAS p21 protein activator 2 [Homo sapiens]
Length = 849
Score = 30.0 bits (66), Expect = 3.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 124 SSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTN 168
SS+ ++S++ E ++ ++I + LW+NG + D L P N
Sbjct: 233 SSYTRKSQFQVEEEDIEKLEIRIDLWNNGNLVQDVFLGEIKVPVN 277
>gi|108860697 zinc finger protein 592 [Homo sapiens]
Length = 1267
Score = 30.0 bits (66), Expect = 3.0
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 55 KSPRTPPQRFYSS-EHEYSGLNIVRPSTGKIVNELFKEAREHGAVPLNEATRASG 108
K P+ P S EHE SG N V P F EA E + P N + G
Sbjct: 203 KEPKPEPLPLGSQQEHEQSGQNTVEPHKDPDATRFFGEALEFNSHPSNSIGESKG 257
>gi|19923475 tRNA methyltransferase 6 [Homo sapiens]
Length = 497
Score = 29.6 bits (65), Expect = 3.9
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 201 QDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAVVLIDDSVPTTKIQ 260
+DQE ++ + G ++ GS I EE+ K L A L+ +
Sbjct: 316 EDQETMETISQDPEHKGPKER-GSKKDYIQEKQRRQEEQRKRHLEAAALLSE-------- 366
Query: 261 IRLADGSRLIQRFNSTHRILDVRNFIVQSRP 291
R ADG + RF+ T +L + +F+ SRP
Sbjct: 367 -RNADGLIVASRFHPTPLLLSLLDFVAPSRP 396
>gi|55741632 fibronectin type III and SPRY domain containing 2 [Homo
sapiens]
Length = 749
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 87 ELFKEAREHGAVPLNEATRASGDDKSKSFTGGGYRLGSSFCKRSEYIYGENQLQDVQILL 146
++F E +EH +PLNEA ++ D+ K+ Y+L + + N L++V I +
Sbjct: 192 KVFDEHKEHEVIPLNEALESAKDEIHKNM----YKLEKQIIEMENF---ANHLEEVFITV 244
Query: 147 K 147
+
Sbjct: 245 E 245
>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
Length = 1035
Score = 28.9 bits (63), Expect = 6.6
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 49 PKATVFKSPRTPPQRFYSSEHEYSGL----NIVRPST--GKIVNELFKEAREHGAVPLNE 102
P F S +TPP ++S H + GL ++V +T + +FK + G V
Sbjct: 591 PMIAPFSSKQTPPPFTHASTHHFHGLVKATSVVMSTTLASTSKDSVFKPPLDFGVV---N 647
Query: 103 ATRASGDDKSKSFTGGGYRLGSSFCKRSEY 132
T A G+ S T + LG++ R+++
Sbjct: 648 VTSAVGNTYSVPSTCDTFLLGTAQAFRADF 677
>gi|194440660 topoisomerase (DNA) II binding protein 1 [Homo
sapiens]
Length = 1522
Score = 28.9 bits (63), Expect = 6.6
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 65 YSSEHEYSGLNIVRPSTGKIVNELFKEAREHGAVPL 100
+S+E+E + NI++ + GKI++ L + ++ VPL
Sbjct: 563 FSNENESNIANIIKENAGKIMSLLSRTVADYAVVPL 598
>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
sapiens]
Length = 298
Score = 28.9 bits (63), Expect = 6.6
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 3 EGGGPEPGEQERRSSGPRPPSARDLQLALAELYEDEVKCK 42
E GG P E +R PP ARD++ L L E+ CK
Sbjct: 215 EPGGVSPAEAQRAWWVLEPPGARDVEAQLRRLQEERT-CK 253
>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
sapiens]
Length = 1835
Score = 28.9 bits (63), Expect = 6.6
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Query: 78 RPSTGKIVNELFKEAREHGAVPLNEATRASGDDKSKSFTGGGYRLGSSFCKRSEYIYGEN 137
+ +TG V+E E E+ + ++GD K G G + S
Sbjct: 1251 KEATGLHVHERKIEVMENPSCRRGATNTSNGDTKENEMHVGSLLNGRKYSDSSLPPSNSG 1310
Query: 138 QLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDM 197
++Q L SNG SL+ GE N + Q E + +I +L++ + G + D
Sbjct: 1311 KIQSETNQCSLISNGPSLELGE----NGASGKQNSEQIDMQDIKSDLRKPLVNGICDFDK 1366
Query: 198 ED 199
D
Sbjct: 1367 GD 1368
>gi|4506885 semenogelin II precursor [Homo sapiens]
Length = 582
Score = 28.5 bits (62), Expect = 8.7
Identities = 51/267 (19%), Positives = 102/267 (38%), Gaps = 36/267 (13%)
Query: 9 PGEQERRSSGPRPPSARDLQLALAELYEDEVKCKSSKSNRPKAT---VFKSPRTPPQRFY 65
P Q+R GP+ +L + + + K S + + S RT ++ +
Sbjct: 240 PAHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLSQDQEHGRKAHKISYPSSRTEERQLH 299
Query: 66 SSEHEYS--------GLNIVRPSTGKIVNE--LFKEAREHGAVPLNEATRASGDDKSKSF 115
E + GK N+ + + +EHG N+ + S + +
Sbjct: 300 HGEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKE-NKISYQSSSTEERHL 358
Query: 116 TGG------GYRLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNA 169
G G GS + E I+G++Q Q + + + + + ++ + T
Sbjct: 359 NCGEKGIQKGVSKGSISIQTEEQIHGKSQNQ---VRIPSQAQEYGHKENKISYQSSSTEE 415
Query: 170 QFLES--------VKRGEIPLELQRLVHGGQVNLDMEDHQDQE--YIKPRLRFKAFSGEG 219
+ L S V +G I ++ + +HG N QDQE + + ++ +++ S E
Sbjct: 416 RRLNSGEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEE 475
Query: 220 QKL---GSLTPEIVSTPSSPEEEDKSI 243
++L G T + VS S + +K +
Sbjct: 476 RRLNYGGKSTQKDVSQSSISFQIEKLV 502
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 28.5 bits (62), Expect = 8.7
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 38 EVKCKSSKSNRPKATVFKSPRTPPQRFYSSEHEYSGLNIVRPSTGKIVNELFKEAREHGA 97
E K +S+K+ + ++ KSP+ R Y E + + RPS + N+L ++
Sbjct: 734 EEKDRSNKAEKERSLKEKSPKEEKLRLYKEERKKKSKD--RPSKLEKKNDLKEDKIS--- 788
Query: 98 VPLNEATRASGDDKSKSFTGGGYRLGSSF---CKRSEYIYGEN 137
E + +DK K YR S+F C +++++ E+
Sbjct: 789 ---KEKEKIFKEDKEKLKKEKVYREDSAFDEYCNKNQFLENED 828
>gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens]
Length = 440
Score = 28.5 bits (62), Expect = 8.7
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 83 KIVNELFKEAREHG-AVPLNEATRASGDDKSKSFTGGGYRLGSSFCKRSEYIYGENQLQD 141
K+V ELF+ A EH ++ + A G + S +GG + + + + G + D
Sbjct: 265 KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD 324
Query: 142 VQILLKLWSNGFSLDDGELRPYNEPTNAQFL---ESVKRGEIPLELQRLVHGGQVNLD 196
V++++ + +LD +RP +F E K+ + R+ V LD
Sbjct: 325 VKVIMAT-NRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLD 381
>gi|74229025 membralin isoform 1 [Homo sapiens]
Length = 620
Score = 28.5 bits (62), Expect = 8.7
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 166 PTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLG-S 224
P QF +S RG P V G NLDMED +++E L + F K
Sbjct: 123 PVFLQFCDSGGRGSFP---GLAVEPGS-NLDMEDEEEEE-----LTMEMFGNSSIKFELD 173
Query: 225 LTPEIVSTPSSPE 237
+ P++ PSS E
Sbjct: 174 IEPKVFKPPSSTE 186
>gi|15529970 membralin isoform 2 [Homo sapiens]
Length = 408
Score = 28.5 bits (62), Expect = 8.7
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 166 PTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLG-S 224
P QF +S RG P V G NLDMED +++E L + F K
Sbjct: 123 PVFLQFCDSGGRGSFP---GLAVEPGS-NLDMEDEEEEE-----LTMEMFGNSSIKFELD 173
Query: 225 LTPEIVSTPSSPE 237
+ P++ PSS E
Sbjct: 174 IEPKVFKPPSSTE 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,729,926
Number of Sequences: 37866
Number of extensions: 650387
Number of successful extensions: 1764
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1729
Number of HSP's gapped (non-prelim): 35
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.