Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ST7 Sequence: fasta or formatted (554aa) NCBI GI: 11761624
Description:

suppression of tumorigenicity 7 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {585aa} suppression of tumorigenicity 7 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         53           2
 C cysteine            1.8         10           1
 D aspartate           3.2         18           2
 E glutamate           7.0         39           3
 F phenylalanine       5.6         31           2
 G glycine             3.6         20           2
 H histidine           3.2         18           2
 I isoleucine          4.7         26           1
 K lysine              4.5         25           2
 L leucine            12.6         70           2
 M methionine          2.7         15           2
 N asparagine          4.2         23           2
 P proline             4.3         24           2
 Q glutamine           3.1         17           2
 R arginine            5.8         32           2
 S serine              7.2         40           2
 T threonine           5.6         31           2
 V valine              5.1         28           1
 W tryptophan          2.2         12           2
 Y tyrosine            4.0         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   suppression of tumorigenicity 7 isoform a 
ST7                   0.934   suppression of tumorigenicity 7 isoform b 
ST7L                  0.737   suppression of tumorigenicity 7-like isoform 1 [Homo...
ST7L                  0.737   suppression of tumorigenicity 7-like isoform 4 [Homo...
ST7L                  0.702   suppression of tumorigenicity 7-like isoform 2 [Homo...
ST7L                  0.665   suppression of tumorigenicity 7-like isoform 3 [Homo...
SCN9A                 0.007   sodium channel, voltage-gated, type IX, alpha 
LONRF2                0.007   LON peptidase N-terminal domain and ring finger 2 [...
OGT                   0.005   O-linked GlcNAc transferase isoform 2 
OGT                   0.005   O-linked GlcNAc transferase isoform 1 
DISP1                 0.005   dispatched A 
ZBBX                  0.005   zinc finger, B-box domain containing 
NIPAL1                0.005   NIPA-like domain containing 1 
DOCK9                 0.005   dedicator of cytokinesis 9 isoform b 
DOCK9                 0.005   dedicator of cytokinesis 9 isoform a 
BRD2                  0.004   bromodomain containing 2 
BRD2                  0.004   bromodomain containing 2 
LGR4                  0.004   leucine-rich repeat-containing G protein-coupled re...
ANKS3                 0.004   ankyrin repeat and sterile alpha motif domain contai...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press