Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: XRCC5 Sequence: fasta or formatted (732aa) NCBI GI: 10863945
Description:

ATP-dependent DNA helicase II

Referenced in:

DNases, Recombination, and DNA Repair
Replication Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         45           3
 C cysteine            1.4         10           1
 D aspartate           7.0         51           3
 E glutamate           7.9         58           2
 F phenylalanine       6.0         44           2
 G glycine             5.2         38           2
 H histidine           2.5         18           1
 I isoleucine          7.0         51           3
 K lysine              8.6         63           3
 L leucine             8.9         65           2
 M methionine          2.3         17           1
 N asparagine          3.3         24           2
 P proline             4.2         31           2
 Q glutamine           5.5         40           2
 R arginine            3.7         27           2
 S serine              7.4         54           2
 T threonine           4.4         32           2
 V valine              6.4         47           2
 W tryptophan          0.5          4           1
 Y tyrosine            1.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-dependent DNA helicase II 
TPX2                  0.006   TPX2, microtubule-associated protein homolog 
KTN1                  0.005   kinectin 1 isoform c 
GTF3C4                0.005   general transcription factor IIIC 4 
SDAD1                 0.005   SDA1 domain containing 1 
KTN1                  0.005   kinectin 1 isoform a 
KTN1                  0.005   kinectin 1 isoform a 
BAZ1B                 0.005   bromodomain adjacent to zinc finger domain, 1B [Homo...
FAM75C1               0.004   family with sequence similarity 75, member C1 [Homo...
RAPGEF6               0.004   PDZ domain-containing guanine nucleotide exchange fa...
LPHN1                 0.004   latrophilin 1 isoform 1 precursor 
LPHN1                 0.004   latrophilin 1 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press