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Search of human proteins with 239749350
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]
(226 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens] 469 e-132
gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens] 469 e-132
gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo sap... 469 e-132
gi|223890243 ribosomal protein L10 [Homo sapiens] 130 7e-31
gi|18152783 ribosomal protein L10-like protein [Homo sapiens] 126 1e-29
gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens] 113 2e-25
gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens] 113 2e-25
gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo sap... 113 2e-25
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 108 5e-24
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 108 5e-24
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 108 5e-24
gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens] 84 7e-17
gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo ... 84 7e-17
gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo ... 84 7e-17
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 29 2.9
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 29 2.9
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 29 2.9
gi|110347431 latent transforming growth factor beta binding prot... 29 2.9
gi|51593090 mucin 13, epithelial transmembrane [Homo sapiens] 29 3.7
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 28 4.9
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 28 4.9
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 28 4.9
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 28 4.9
gi|150170725 zinc and ring finger 4 [Homo sapiens] 28 6.4
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 28 8.3
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 28 8.3
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 28 8.3
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 28 8.3
gi|239747259 PREDICTED: hypothetical protein [Homo sapiens] 28 8.3
gi|31377634 guanylate binding protein 4 [Homo sapiens] 28 8.3
>gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 469 bits (1206), Expect = e-132
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60
MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH
Sbjct: 1 MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60
Query: 61 VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120
VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT
Sbjct: 61 VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120
Query: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180
SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME
Sbjct: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180
Query: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226
MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV
Sbjct: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226
>gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 469 bits (1206), Expect = e-132
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60
MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH
Sbjct: 1 MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60
Query: 61 VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120
VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT
Sbjct: 61 VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120
Query: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180
SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME
Sbjct: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180
Query: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226
MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV
Sbjct: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226
>gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo
sapiens]
Length = 226
Score = 469 bits (1206), Expect = e-132
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60
MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH
Sbjct: 1 MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60
Query: 61 VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120
VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT
Sbjct: 61 VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120
Query: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180
SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME
Sbjct: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180
Query: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226
MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV
Sbjct: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226
>gi|223890243 ribosomal protein L10 [Homo sapiens]
Length = 214
Score = 130 bits (328), Expect = 7e-31
Identities = 65/87 (74%), Positives = 71/87 (81%)
Query: 28 IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
+RGAF KPQG VARVHIGQVIMSI TKLQNKEHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFT 174
Query: 88 KFSVDEFEDMMAEKQLIPITVGSSIPP 114
KF+ DEFEDM+AEK+LIP G P
Sbjct: 175 KFNADEFEDMVAEKRLIPDGCGVKYIP 201
>gi|18152783 ribosomal protein L10-like protein [Homo sapiens]
Length = 214
Score = 126 bits (317), Expect = 1e-29
Identities = 63/87 (72%), Positives = 70/87 (80%)
Query: 28 IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
+RGAF KPQG VARVHIGQVIMSI TKLQN+EHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFT 174
Query: 88 KFSVDEFEDMMAEKQLIPITVGSSIPP 114
KF+ DEFEDM+A+K LIP G P
Sbjct: 175 KFNADEFEDMVAKKCLIPDGCGVKYVP 201
>gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 113 bits (282), Expect = 2e-25
Identities = 60/96 (62%), Positives = 69/96 (71%), Gaps = 3/96 (3%)
Query: 19 VCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNI 78
VC ++ + AF KPQG VARVHIGQVIM I TKLQNKEHVI AL + FKFPG Q +
Sbjct: 44 VCRLQTGMQV--AFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKV 101
Query: 79 HFSEKWDFTKFSVDEFEDMMAEKQLIPITVG-SSIP 113
H S+KW FTKF+ DEFE ++AEKQL P G SIP
Sbjct: 102 HISKKWGFTKFNADEFEYVVAEKQLSPDGCGVKSIP 137
>gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 113 bits (282), Expect = 2e-25
Identities = 60/96 (62%), Positives = 69/96 (71%), Gaps = 3/96 (3%)
Query: 19 VCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNI 78
VC ++ + AF KPQG VARVHIGQVIM I TKLQNKEHVI AL + FKFPG Q +
Sbjct: 44 VCRLQTGMQV--AFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKV 101
Query: 79 HFSEKWDFTKFSVDEFEDMMAEKQLIPITVG-SSIP 113
H S+KW FTKF+ DEFE ++AEKQL P G SIP
Sbjct: 102 HISKKWGFTKFNADEFEYVVAEKQLSPDGCGVKSIP 137
>gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo
sapiens]
Length = 150
Score = 113 bits (282), Expect = 2e-25
Identities = 60/96 (62%), Positives = 69/96 (71%), Gaps = 3/96 (3%)
Query: 19 VCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNI 78
VC ++ + AF KPQG VARVHIGQVIM I TKLQNKEHVI AL + FKFPG Q +
Sbjct: 44 VCRLQTGMQV--AFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKV 101
Query: 79 HFSEKWDFTKFSVDEFEDMMAEKQLIPITVG-SSIP 113
H S+KW FTKF+ DEFE ++AEKQL P G SIP
Sbjct: 102 HISKKWGFTKFNADEFEYVVAEKQLSPDGCGVKSIP 137
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 108 bits (269), Expect = 5e-24
Identities = 54/74 (72%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Query: 20 CSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIH 79
C +E I+GAF KPQG VARVHIGQV SICTKLQNKEHVIEA C+A FKFPG Q IH
Sbjct: 211 CRLET--GIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIH 267
Query: 80 FSEKWDFTKFSVDE 93
S+KW FTKF+VDE
Sbjct: 268 ISKKWGFTKFNVDE 281
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 108 bits (269), Expect = 5e-24
Identities = 54/74 (72%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Query: 20 CSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIH 79
C +E I+GAF KPQG VARVHIGQV SICTKLQNKEHVIEA C+A FKFPG Q IH
Sbjct: 88 CRLET--GIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIH 144
Query: 80 FSEKWDFTKFSVDE 93
S+KW FTKF+VDE
Sbjct: 145 ISKKWGFTKFNVDE 158
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 108 bits (269), Expect = 5e-24
Identities = 54/74 (72%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Query: 20 CSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIH 79
C +E I+GAF KPQG VARVHIGQV SICTKLQNKEHVIEA C+A FKFPG Q IH
Sbjct: 88 CRLET--GIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIH 144
Query: 80 FSEKWDFTKFSVDE 93
S+KW FTKF+VDE
Sbjct: 145 ISKKWGFTKFNVDE 158
>gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens]
Length = 186
Score = 84.3 bits (207), Expect = 7e-17
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 34 KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK G Q I S+KW FTKF VD
Sbjct: 128 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 186
>gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo
sapiens]
Length = 180
Score = 84.3 bits (207), Expect = 7e-17
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 34 KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK G Q I S+KW FTKF VD
Sbjct: 122 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 180
>gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo
sapiens]
Length = 186
Score = 84.3 bits (207), Expect = 7e-17
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 34 KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK G Q I S+KW FTKF VD
Sbjct: 128 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 186
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 29.3 bits (64), Expect = 2.9
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 50 SICTKLQNKEHVIEALCKANFKFPGR-QNIHFSEKWDFTKFSVDEFEDMMAE--KQLIPI 106
++CTK H+ CK F+ PG Q+ + D E+ +MAE + +P
Sbjct: 277 TVCTKCGGAGHIASD-CK--FQRPGDPQSAQDKARMD------KEYLSLMAELGEAPVPA 327
Query: 107 TVGSSIPPIVTLRTSGTRRAEELARPRPPT 136
+VGS+ P T S R A P PP+
Sbjct: 328 SVGSTSGPATTPLASAPRPAAPANNPPPPS 357
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 29.3 bits (64), Expect = 2.9
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 50 SICTKLQNKEHVIEALCKANFKFPGR-QNIHFSEKWDFTKFSVDEFEDMMAE--KQLIPI 106
++CTK H+ CK F+ PG Q+ + D E+ +MAE + +P
Sbjct: 277 TVCTKCGGAGHIASD-CK--FQRPGDPQSAQDKARMD------KEYLSLMAELGEAPVPA 327
Query: 107 TVGSSIPPIVTLRTSGTRRAEELARPRPPT 136
+VGS+ P T S R A P PP+
Sbjct: 328 SVGSTSGPATTPLASAPRPAAPANNPPPPS 357
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 29.3 bits (64), Expect = 2.9
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 50 SICTKLQNKEHVIEALCKANFKFPGR-QNIHFSEKWDFTKFSVDEFEDMMAE--KQLIPI 106
++CTK H+ CK F+ PG Q+ + D E+ +MAE + +P
Sbjct: 277 TVCTKCGGAGHIASD-CK--FQRPGDPQSAQDKARMD------KEYLSLMAELGEAPVPA 327
Query: 107 TVGSSIPPIVTLRTSGTRRAEELARPRPPT 136
+VGS+ P T S R A P PP+
Sbjct: 328 SVGSTSGPATTPLASAPRPAAPANNPPPPS 357
>gi|110347431 latent transforming growth factor beta binding protein
4 isoform a [Homo sapiens]
Length = 1624
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 174 QRPLMMEMLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAIC 218
+RPL++ +L P++ T S SPS V + S A+ A+C
Sbjct: 9 RRPLLLVLLLPLFAAATSAASPSPSPSQVVEVPGVPSRPASVAVC 53
>gi|51593090 mucin 13, epithelial transmembrane [Homo sapiens]
Length = 511
Score = 28.9 bits (63), Expect = 3.7
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 50 SICTKLQNKEHVI--------EALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAE- 100
S+C KL N + + CK FPG+ ++ SE +D + ++D+ +E
Sbjct: 185 SLCVKLHNTSFCLCLEGYYYNSSTCKKGKVFPGKISVTVSETFDPEEKHSMAYQDLHSEI 244
Query: 101 KQLIPITVGSSI---PPIVTLRTSGTRRAE 127
L G+S+ I+T+ TS + R+E
Sbjct: 245 TSLFKDVFGTSVYGQTVILTVSTSLSPRSE 274
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 120 TSGTRRAEELARPRPPTSPWKAQASC 145
+ G RA+ LARP PT K Q SC
Sbjct: 273 SGGHHRAQRLARPARPTEIMKLQISC 298
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 120 TSGTRRAEELARPRPPTSPWKAQASC 145
+ G RA+ LARP PT K Q SC
Sbjct: 601 SGGHHRAQRLARPARPTEIMKLQISC 626
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 120 TSGTRRAEELARPRPPTSPWKAQASC 145
+ G RA+ LARP PT K Q SC
Sbjct: 601 SGGHHRAQRLARPARPTEIMKLQISC 626
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 120 TSGTRRAEELARPRPPTSPWKAQASC 145
+ G RA+ LARP PT K Q SC
Sbjct: 601 SGGHHRAQRLARPARPTEIMKLQISC 626
>gi|150170725 zinc and ring finger 4 [Homo sapiens]
Length = 429
Score = 28.1 bits (61), Expect = 6.4
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 138 PWKAQA---SCALQRPSRAQGQDSFDMTARQF--HNAYLPYQRP 176
PW +QA SC + + S A +DSFD T F + LP RP
Sbjct: 338 PWFSQAPRRSCPVCKQSVAATEDSFDSTTYSFRDEDPSLPGHRP 381
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 27.7 bits (60), Expect = 8.3
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 113 PPIVTLRTSGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLP 172
PP+ + ++ + RA + P PP P + ALQ P+ + H A P
Sbjct: 329 PPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPP 388
Query: 173 YQRPLM 178
PL+
Sbjct: 389 IAPPLV 394
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 27.7 bits (60), Expect = 8.3
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 113 PPIVTLRTSGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLP 172
PP+ + ++ + RA + P PP P + ALQ P+ + H A P
Sbjct: 329 PPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPP 388
Query: 173 YQRPLM 178
PL+
Sbjct: 389 IAPPLV 394
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 27.7 bits (60), Expect = 8.3
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 113 PPIVTLRTSGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLP 172
PP+ + ++ + RA + P PP P + ALQ P+ + H A P
Sbjct: 329 PPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPP 388
Query: 173 YQRPLM 178
PL+
Sbjct: 389 IAPPLV 394
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 27.7 bits (60), Expect = 8.3
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 113 PPIVTLRTSGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLP 172
PP+ + ++ + RA + P PP P + ALQ P+ + H A P
Sbjct: 329 PPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPP 388
Query: 173 YQRPLM 178
PL+
Sbjct: 389 IAPPLV 394
>gi|239747259 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 27.7 bits (60), Expect = 8.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 108 VGSSIPPIVTLRTSGTRRAEELARPRPPTSPWK 140
+GS + P V LR G+ R + RP P T P K
Sbjct: 1 MGSGLHPWVVLRPEGSARLQGHFRPPPKTIPAK 33
>gi|31377634 guanylate binding protein 4 [Homo sapiens]
Length = 640
Score = 27.7 bits (60), Expect = 8.3
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 59 EHVIEALCKANFKFPGRQNIHFSEK----WDF 86
EH+ E++ + F PG N++ EK WD+
Sbjct: 430 EHLTESILRGIFSVPGGHNLYLEEKKQVEWDY 461
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,572,199
Number of Sequences: 37866
Number of extensions: 410449
Number of successful extensions: 1232
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 30
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.