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Search of human proteins with 239748707
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748707 PREDICTED: hypothetical protein XP_002346778 [Homo
sapiens]
(92 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748707 PREDICTED: hypothetical protein XP_002346778 [Homo ... 187 2e-48
gi|239742733 PREDICTED: hypothetical protein XP_002342624 [Homo ... 187 2e-48
gi|31543543 retinoic acid induced 17 [Homo sapiens] 29 0.72
gi|239757369 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239751917 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239746407 PREDICTED: hypothetical protein XP_002343705 [Homo ... 29 0.93
gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo ... 28 1.6
gi|239748653 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo ... 28 2.1
gi|194097448 RELT-like 2 [Homo sapiens] 27 2.7
gi|194097446 RELT-like 2 [Homo sapiens] 27 2.7
gi|13491166 pumilio 1 isoform 2 [Homo sapiens] 27 3.5
gi|66932909 pumilio 1 isoform 1 [Homo sapiens] 27 3.5
gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens] 27 3.5
gi|239755764 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239750268 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo ... 27 4.6
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 27 4.6
gi|222136641 NIMA-related kinase 9 [Homo sapiens] 26 6.1
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 26 6.1
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 26 7.9
gi|189217904 RPGRIP1-like isoform b [Homo sapiens] 26 7.9
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 26 7.9
>gi|239748707 PREDICTED: hypothetical protein XP_002346778 [Homo
sapiens]
Length = 92
Score = 187 bits (474), Expect = 2e-48
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MVAGEDSEQLPRLEVTEADHTPRLLRLMAVRVKAVRRELLYVCFGETPGLGISQPLGQVQ 60
MVAGEDSEQLPRLEVTEADHTPRLLRLMAVRVKAVRRELLYVCFGETPGLGISQPLGQVQ
Sbjct: 1 MVAGEDSEQLPRLEVTEADHTPRLLRLMAVRVKAVRRELLYVCFGETPGLGISQPLGQVQ 60
Query: 61 EGLHAGRRRGQRRPGLQVSQTPPPSMGLHGTS 92
EGLHAGRRRGQRRPGLQVSQTPPPSMGLHGTS
Sbjct: 61 EGLHAGRRRGQRRPGLQVSQTPPPSMGLHGTS 92
>gi|239742733 PREDICTED: hypothetical protein XP_002342624 [Homo
sapiens]
Length = 92
Score = 187 bits (474), Expect = 2e-48
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MVAGEDSEQLPRLEVTEADHTPRLLRLMAVRVKAVRRELLYVCFGETPGLGISQPLGQVQ 60
MVAGEDSEQLPRLEVTEADHTPRLLRLMAVRVKAVRRELLYVCFGETPGLGISQPLGQVQ
Sbjct: 1 MVAGEDSEQLPRLEVTEADHTPRLLRLMAVRVKAVRRELLYVCFGETPGLGISQPLGQVQ 60
Query: 61 EGLHAGRRRGQRRPGLQVSQTPPPSMGLHGTS 92
EGLHAGRRRGQRRPGLQVSQTPPPSMGLHGTS
Sbjct: 61 EGLHAGRRRGQRRPGLQVSQTPPPSMGLHGTS 92
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 29.3 bits (64), Expect = 0.72
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 17 EADHTPRLLRLMAVRVKAVRRELLYVCFGETPGLGIS-QPLGQVQEGLHAGRRRGQRRPG 75
+ H P + MA A+ + L + P G S QP +Q+GLH Q P
Sbjct: 920 QLSHPPDMPNNMA----ALEKPLSHPMQETMPHAGSSDQPHPSIQQGLHVPHPSSQSGPP 975
Query: 76 LQVSQTPPP 84
L S PPP
Sbjct: 976 LHHSGAPPP 984
>gi|239757369 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 25 LRLMAV-RVKAVRRELLYVCFGETPGLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPP 83
LR++ V RV+ + R L + G G+G P G+++ L R G G + PP
Sbjct: 94 LRVLGVLRVRGLPRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPP 153
Query: 84 PS 85
P+
Sbjct: 154 PA 155
>gi|239751917 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 25 LRLMAV-RVKAVRRELLYVCFGETPGLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPP 83
LR++ V RV+ + R L + G G+G P G+++ L R G G + PP
Sbjct: 94 LRVLGVLRVRGLPRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPP 153
Query: 84 PS 85
P+
Sbjct: 154 PA 155
>gi|239746407 PREDICTED: hypothetical protein XP_002343705 [Homo
sapiens]
Length = 188
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 25 LRLMAV-RVKAVRRELLYVCFGETPGLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPP 83
LR++ V RV+ + R L + G G+G P G+++ L R G G + PP
Sbjct: 94 LRVLGVLRVRGLPRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPP 153
Query: 84 PS 85
P+
Sbjct: 154 PA 155
>gi|239754096 PREDICTED: hypothetical protein XP_002345879 [Homo
sapiens]
Length = 297
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 4 GEDSEQLPRLEVTEADHTP-RLLRLMAVRVKAVRRELLYVCFGETPGLGISQPLGQVQEG 62
G+ +L LE +H+P R L+ +AV RR + LG ++ G
Sbjct: 188 GQAHAELLALERRLPEHSPLRALKPLAVGGPRGRR---------------AGRLGSLRRG 232
Query: 63 LHAGRRRGQRRPGLQVSQTPPP 84
L GR+R Q+R GL V + P
Sbjct: 233 LRLGRQRVQQRGGLPVQWSQGP 254
>gi|239748653 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 4 GEDSEQLPRLEVTEADHTP-RLLRLMAVRVKAVRRELLYVCFGETPGLGISQPLGQVQEG 62
G+ +L LE +H+P R L+ +AV RR + LG ++ G
Sbjct: 186 GQAHAELLALERRLPEHSPLRALKPLAVGGPRGRR---------------AGRLGSLRRG 230
Query: 63 LHAGRRRGQRRPGLQVSQTPPP 84
L GR+R Q+R GL V + P
Sbjct: 231 LRLGRQRVQQRGGLPVQWSRGP 252
>gi|239742678 PREDICTED: hypothetical protein XP_002342581 [Homo
sapiens]
Length = 295
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 4 GEDSEQLPRLEVTEADHTP-RLLRLMAVRVKAVRRELLYVCFGETPGLGISQPLGQVQEG 62
G+ +L LE +H+P R L+ +AV RR + LG ++ G
Sbjct: 186 GQAHAELLALERRLPEHSPLRALKPLAVGGPRGRR---------------AGRLGSLRRG 230
Query: 63 LHAGRRRGQRRPGLQVSQTPPP 84
L GR+R Q+R GL V + P
Sbjct: 231 LRLGRQRVQQRGGLPVQWSRGP 252
>gi|194097448 RELT-like 2 [Homo sapiens]
Length = 303
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 45 GETPGLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPPPSMG 87
G+ PG G GQ + G+ A R RP QV +PP G
Sbjct: 198 GQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNG 240
>gi|194097446 RELT-like 2 [Homo sapiens]
Length = 303
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 45 GETPGLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPPPSMG 87
G+ PG G GQ + G+ A R RP QV +PP G
Sbjct: 198 GQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNG 240
>gi|13491166 pumilio 1 isoform 2 [Homo sapiens]
Length = 1186
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 79 SQTPPPSMGLHGTS 92
SQTPPPS+ HG+S
Sbjct: 756 SQTPPPSLSSHGSS 769
>gi|66932909 pumilio 1 isoform 1 [Homo sapiens]
Length = 1188
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 79 SQTPPPSMGLHGTS 92
SQTPPPS+ HG+S
Sbjct: 756 SQTPPPSLSSHGSS 769
>gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens]
Length = 186
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 48 PGLGISQPLGQVQEGLHAGRRRGQRRP------GLQVSQTPPP 84
PG+G QPL G AGR+R R+P LQ + PP
Sbjct: 37 PGMG-QQPLQPGSPGRGAGRQRASRQPPCGALTSLQAAPQQPP 78
>gi|239755764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1149
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 28 MAVRVKAVRRELLYVCFGETPGLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPPPSMG 87
M +V V EL+ V + ++Q LG EG ++ RRP Q+S P +MG
Sbjct: 321 MGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEGWRLLQKSQTRRP-RQLSSIPTSTMG 379
>gi|239750268 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1154
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 28 MAVRVKAVRRELLYVCFGETPGLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPPPSMG 87
M +V V EL+ V + ++Q LG EG ++ RRP Q+S P +MG
Sbjct: 326 MGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEGWRLLQKSQTRRP-RQLSSIPTSTMG 384
>gi|239744576 PREDICTED: hypothetical protein XP_002343198 [Homo
sapiens]
Length = 1154
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 28 MAVRVKAVRRELLYVCFGETPGLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPPPSMG 87
M +V V EL+ V + ++Q LG EG ++ RRP Q+S P +MG
Sbjct: 326 MGYKVSTVLPELMQVFQQQASSKYLAQVLGYTIEGWRLLQKSQTRRP-RQLSSIPTSTMG 384
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 45 GETPGLGISQPLGQVQEGLHAGRRRGQRRPGLQ-VSQTPPPSM 86
G PG+ SQP A G PG Q +S PPP+M
Sbjct: 1132 GSGPGISNSQPSQMHLNSAAAQSPMGMNLPGQQPLSHEPPPAM 1174
>gi|222136641 NIMA-related kinase 9 [Homo sapiens]
Length = 979
Score = 26.2 bits (56), Expect = 6.1
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 49 GLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPPPSMGLHGT 91
GL I G G G+ Q S+TP PS G GT
Sbjct: 739 GLSIGTVFQSSSPGGGGGGGGGEEEDSQQESETPDPSGGFRGT 781
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 47 TPGLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPPPSMGLHGT 91
TP I +PL Q+ + + Q+ P Q + PP HGT
Sbjct: 441 TPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGT 485
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 49 GLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPPPSMGL 88
G+G +QP G V G H RG+ +V + PP +GL
Sbjct: 75 GVGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPPPLGL 113
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 49 GLGISQPLGQVQEGLHAGRRRGQRRPGLQVSQTPPPSMGL 88
G+G +QP G V G H RG+ +V + PP +GL
Sbjct: 75 GVGGAQP-GSVPLGQHLALERGRTLGHGRVGRRDPPPLGL 113
>gi|189217904 RPGRIP1-like isoform b [Homo sapiens]
Length = 1235
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 13/51 (25%)
Query: 55 PLGQVQEGLHAGRRRGQRRPGLQ-------------VSQTPPPSMGLHGTS 92
P VQ ++ GRR+ GLQ V++TP P +G S
Sbjct: 149 PYNNVQSRINTGRRKANENAGLQECPRKGIKFQDADVAETPHPMFTKYGNS 199
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 13/51 (25%)
Query: 55 PLGQVQEGLHAGRRRGQRRPGLQ-------------VSQTPPPSMGLHGTS 92
P VQ ++ GRR+ GLQ V++TP P +G S
Sbjct: 149 PYNNVQSRINTGRRKANENAGLQECPRKGIKFQDADVAETPHPMFTKYGNS 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,163,279
Number of Sequences: 37866
Number of extensions: 180442
Number of successful extensions: 615
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 26
length of query: 92
length of database: 18,247,518
effective HSP length: 63
effective length of query: 29
effective length of database: 15,861,960
effective search space: 459996840
effective search space used: 459996840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.