Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290042 Sequence: fasta or formatted (189aa) NCBI GI: 239748533
Description:

PREDICTED: hypothetical protein XP_002346719

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          9           2
 C cysteine            1.1          2           1
 D aspartate           6.9         13           2
 E glutamate           6.3         12           2
 F phenylalanine       7.4         14           2
 G glycine             4.2          8           1
 H histidine           3.2          6           1
 I isoleucine          5.8         11           2
 K lysine              5.3         10           1
 L leucine            10.6         20           3
 M methionine          3.2          6           1
 N asparagine          4.8          9           1
 P proline             3.2          6           1
 Q glutamine           4.2          8           1
 R arginine            5.8         11           1
 S serine             11.6         22           2
 T threonine           4.2          8           2
 V valine              4.2          8           1
 W tryptophan          0.5          1           1
 Y tyrosine            2.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346719 
LOC100292617          1.000   PREDICTED: similar to Transmembrane protein ENSP000...
C5orf42               0.856   hypothetical protein LOC65250 
XIRP2                 0.017   xin actin-binding repeat containing 2 isoform 1 [Ho...
KIAA1239              0.017   hypothetical protein LOC57495 
RASA2                 0.014   RAS p21 protein activator 2 
GBP5                  0.011   guanylate-binding protein 5 
GBP5                  0.011   guanylate-binding protein 5 
CCDC77                0.008   coiled-coil domain containing 77 isoform b 
CCDC77                0.008   coiled-coil domain containing 77 isoform b 
CCDC77                0.008   coiled-coil domain containing 77 isoform a 
CCDC77                0.008   coiled-coil domain containing 77 isoform b 
ZKSCAN5               0.008   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               0.008   zinc finger with KRAB and SCAN domains 5 
NFE2L3                0.008   nuclear factor erythroid 2-like 3 
KLRAQ1                0.008   KLRAQ motif containing 1 isoform 3 
KLRAQ1                0.008   KLRAQ motif containing 1 isoform 2 
KLRAQ1                0.008   KLRAQ motif containing 1 isoform 1 
MGA                   0.008   MAX gene associated 
HIVEP1                0.006   human immunodeficiency virus type I enhancer bindin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press