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Search of human proteins with 239748188
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens]
(100 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens] 211 1e-55
gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens] 211 1e-55
gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo ... 211 1e-55
gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4... 138 1e-33
gi|239755555 PREDICTED: similar to NADH dehydrogenase (ubiquinon... 126 3e-30
gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo ... 126 3e-30
gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo ... 126 3e-30
gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog ... 105 1e-23
gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens] 47 3e-06
gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens] 47 3e-06
gi|197927448 WD repeat domain 6 protein [Homo sapiens] 27 4.5
gi|226958478 zinc finger protein 727 [Homo sapiens] 26 5.9
gi|239508879 PREDICTED: similar to zinc finger protein 208 [Homo... 26 5.9
gi|192447434 carbonic anhydrase I [Homo sapiens] 26 5.9
gi|192447432 carbonic anhydrase I [Homo sapiens] 26 5.9
gi|192447430 carbonic anhydrase I [Homo sapiens] 26 5.9
gi|4502517 carbonic anhydrase I [Homo sapiens] 26 5.9
gi|239757210 PREDICTED: similar to Zinc finger protein ENSP00000... 26 7.8
gi|239751716 PREDICTED: similar to Zinc finger protein ENSP00000... 26 7.8
gi|239746219 PREDICTED: similar to Zinc finger protein ENSP00000... 26 7.8
gi|45593140 GTP binding protein 2 [Homo sapiens] 26 7.8
>gi|239753639 PREDICTED: similar to hCG2040339 [Homo sapiens]
Length = 100
Score = 211 bits (536), Expect = 1e-55
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60
MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD
Sbjct: 1 MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60
Query: 61 VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100
VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF
Sbjct: 61 VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100
>gi|239748188 PREDICTED: similar to hCG2040339 [Homo sapiens]
Length = 100
Score = 211 bits (536), Expect = 1e-55
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60
MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD
Sbjct: 1 MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60
Query: 61 VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100
VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF
Sbjct: 61 VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100
>gi|239742082 PREDICTED: hypothetical protein XP_002342432 [Homo
sapiens]
Length = 100
Score = 211 bits (536), Expect = 1e-55
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60
MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD
Sbjct: 1 MVRSGCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPD 60
Query: 61 VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100
VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF
Sbjct: 61 VNWDRKNNSEPWNKLDPNDQYKFYSVNVDYSKLKKEGPDF 100
>gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4,
9kDa [Homo sapiens]
Length = 81
Score = 138 bits (347), Expect = 1e-33
Identities = 68/82 (82%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Query: 19 ILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPN 78
+L QII Q KKHPSL+PLFVFIG G TGA LYLL LALFNPDV WDR NN EPWNKL PN
Sbjct: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDR-NNPEPWNKLGPN 59
Query: 79 DQYKFYSVNVDYSKLKKEGPDF 100
DQYKFYSVNVDYSKLKKE PDF
Sbjct: 60 DQYKFYSVNVDYSKLKKERPDF 81
>gi|239755555 PREDICTED: similar to NADH dehydrogenase (ubiquinone)
1 alpha subcomplex, 4 [Homo sapiens]
Length = 82
Score = 126 bits (317), Expect = 3e-30
Identities = 58/79 (73%), Positives = 65/79 (82%)
Query: 22 QIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQY 81
Q +SQ KK+PSL+ F+FIG G TGAA Y+L LA F+PDV+W R NN EPWNKL PNDQY
Sbjct: 4 QTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQY 63
Query: 82 KFYSVNVDYSKLKKEGPDF 100
K YSVNVDYSKLKKEGPDF
Sbjct: 64 KSYSVNVDYSKLKKEGPDF 82
>gi|239750055 PREDICTED: hypothetical protein XP_002347281 [Homo
sapiens]
Length = 82
Score = 126 bits (317), Expect = 3e-30
Identities = 58/79 (73%), Positives = 65/79 (82%)
Query: 22 QIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQY 81
Q +SQ KK+PSL+ F+FIG G TGAA Y+L LA F+PDV+W R NN EPWNKL PNDQY
Sbjct: 4 QTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQY 63
Query: 82 KFYSVNVDYSKLKKEGPDF 100
K YSVNVDYSKLKKEGPDF
Sbjct: 64 KSYSVNVDYSKLKKEGPDF 82
>gi|239744362 PREDICTED: hypothetical protein XP_002343134 [Homo
sapiens]
Length = 82
Score = 126 bits (317), Expect = 3e-30
Identities = 58/79 (73%), Positives = 65/79 (82%)
Query: 22 QIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQY 81
Q +SQ KK+PSL+ F+FIG G TGAA Y+L LA F+PDV+W R NN EPWNKL PNDQY
Sbjct: 4 QTLSQTKKNPSLISCFIFIGAGSTGAAWYVLCLASFSPDVSWARNNNPEPWNKLSPNDQY 63
Query: 82 KFYSVNVDYSKLKKEGPDF 100
K YSVNVDYSKLKKEGPDF
Sbjct: 64 KSYSVNVDYSKLKKEGPDF 82
>gi|10047138 NADH:ubiquinone oxidoreductase MLRQ subunit homolog
[Homo sapiens]
Length = 87
Score = 105 bits (261), Expect = 1e-23
Identities = 47/75 (62%), Positives = 58/75 (77%)
Query: 26 QVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYS 85
Q+K+HP ++P+ I +G AALYLL LAL +PDV WDRKNN EPWN+L PNDQYKF +
Sbjct: 13 QIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
Query: 86 VNVDYSKLKKEGPDF 100
V+ DY KLKK+ PDF
Sbjct: 73 VSTDYKKLKKDRPDF 87
>gi|14165280 normal mucosa of esophagus specific 1 [Homo sapiens]
Length = 83
Score = 47.0 bits (110), Expect = 3e-06
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 29 KHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYSVNV 88
K L+PL VF+ V GA+ + ++ +L+ DV DRK N EPW +DP K ++N
Sbjct: 9 KRKELIPLVVFMTVAAGGASSFAVY-SLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
Query: 89 DYSKLKK 95
+ +++
Sbjct: 68 QWKPIEE 74
>gi|37694067 normal mucosa of esophagus specific 1 [Homo sapiens]
Length = 83
Score = 47.0 bits (110), Expect = 3e-06
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 29 KHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYSVNV 88
K L+PL VF+ V GA+ + ++ +L+ DV DRK N EPW +DP K ++N
Sbjct: 9 KRKELIPLVVFMTVAAGGASSFAVY-SLWKTDVILDRKKNPEPWETVDPTVPQKLITINQ 67
Query: 89 DYSKLKK 95
+ +++
Sbjct: 68 QWKPIEE 74
>gi|197927448 WD repeat domain 6 protein [Homo sapiens]
Length = 1151
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 48 ALYLLFLALFNPDVNWDRKNNSEPWNKLDPNDQYKFYSV 86
A +++ L+ D WDR+ N K+DP +Y +V
Sbjct: 859 ACHVMHLSSHRLDEYWDRQRNRHRMVKVDPETRYMSLAV 897
>gi|226958478 zinc finger protein 727 [Homo sapiens]
Length = 499
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 49 LYLLFLALFNPDVNWDRKNNSEPWN 73
L+ L LA+F PD+ + EPWN
Sbjct: 40 LFSLGLAIFKPDLITYLEQRKEPWN 64
>gi|239508879 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1102
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 49 LYLLFLALFNPDVNWDRKNNSEPWN 73
L+ L LA+F PD+ + EPWN
Sbjct: 479 LFSLGLAIFKPDLITYLEQRKEPWN 503
>gi|192447434 carbonic anhydrase I [Homo sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 58 NPDVNWDRKNNSEPWNKLDP 77
+PD +D KN E W+KL P
Sbjct: 3 SPDWGYDDKNGPEQWSKLYP 22
>gi|192447432 carbonic anhydrase I [Homo sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 58 NPDVNWDRKNNSEPWNKLDP 77
+PD +D KN E W+KL P
Sbjct: 3 SPDWGYDDKNGPEQWSKLYP 22
>gi|192447430 carbonic anhydrase I [Homo sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 58 NPDVNWDRKNNSEPWNKLDP 77
+PD +D KN E W+KL P
Sbjct: 3 SPDWGYDDKNGPEQWSKLYP 22
>gi|4502517 carbonic anhydrase I [Homo sapiens]
Length = 261
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 58 NPDVNWDRKNNSEPWNKLDP 77
+PD +D KN E W+KL P
Sbjct: 3 SPDWGYDDKNGPEQWSKLYP 22
>gi|239757210 PREDICTED: similar to Zinc finger protein
ENSP00000350085 [Homo sapiens]
Length = 118
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 49 LYLLFLALFNPDVNWDRKNNSEPWN 73
L L +A+F PD+ K EPWN
Sbjct: 77 LVFLGMAVFKPDLITCLKQGKEPWN 101
>gi|239751716 PREDICTED: similar to Zinc finger protein
ENSP00000350085 [Homo sapiens]
Length = 118
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 49 LYLLFLALFNPDVNWDRKNNSEPWN 73
L L +A+F PD+ K EPWN
Sbjct: 77 LVFLGMAVFKPDLITCLKQGKEPWN 101
>gi|239746219 PREDICTED: similar to Zinc finger protein
ENSP00000350085 [Homo sapiens]
Length = 118
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 49 LYLLFLALFNPDVNWDRKNNSEPWN 73
L L +A+F PD+ K EPWN
Sbjct: 77 LVFLGMAVFKPDLITCLKQGKEPWN 101
>gi|45593140 GTP binding protein 2 [Homo sapiens]
Length = 602
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 5 GCFRSPLLEASATNILCQIISQVKKHPSLMPLFVFIGVGDTGAALYLLFLALFNPDVN 62
GC + P+L S + + Q + P++ P+F V L +FL + P N
Sbjct: 341 GCHKVPMLVTSEDDAVTAA-QQFAQSPNVTPIFTLSSVSGESLDLLKVFLNILPPLTN 397
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,830,977
Number of Sequences: 37866
Number of extensions: 146235
Number of successful extensions: 277
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 21
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.