Guide to the Human Genome
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Name: LOC100130518 Sequence: fasta or formatted (118aa) NCBI GI: 239757210
Description:

PREDICTED: similar to Zinc finger protein ENSP00000350085

Not currently referenced in the text

Other entries for this name:
alt mRNA {118aa} PREDICTED: similar to Zinc finger protein ENSP00000350085
alt mRNA {118aa} PREDICTED: similar to Zinc finger protein ENSP00000350085
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          5           1
 C cysteine            2.5          3           1
 D aspartate           4.2          5           1
 E glutamate           6.8          8           2
 F phenylalanine       5.1          6           1
 G glycine             5.1          6           1
 H histidine           0.8          1           1
 I isoleucine          2.5          3           1
 K lysine              8.5         10           1
 L leucine            12.7         15           1
 M methionine          5.1          6           1
 N asparagine          3.4          4           1
 P proline             6.8          8           2
 Q glutamine           5.9          7           2
 R arginine            4.2          5           1
 S serine              4.2          5           1
 T threonine           5.9          7           1
 V valine              6.8          8           1
 W tryptophan          2.5          3           1
 Y tyrosine            2.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Zinc finger protein ENSP00000... 
LOC100130518          1.000   PREDICTED: similar to Zinc finger protein ENSP00000...
LOC100130518          1.000   PREDICTED: similar to Zinc finger protein ENSP00000...
ZNF257                0.523   zinc finger protein 257 
LOC646864             0.514   PREDICTED: similar to hCG36734 
LOC646864             0.514   PREDICTED: similar to hCG36734 
LOC646864             0.514   PREDICTED: similar to hCG36734 
ZNF98                 0.514   zinc finger protein 98 
ZNF99                 0.509   zinc finger protein 99 
ZNF92                 0.509   zinc finger protein 92 isoform 2 
ZNF273                0.505   zinc finger protein 273 
ZNF708                0.505   zinc finger protein 708 
LOC730110             0.505   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.505   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.505   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
ZNF100                0.500   zinc finger protein 100 
ZNF493                0.495   zinc finger protein 493 isoform 3 
ZNF730                0.495   PREDICTED: zinc finger protein 730 
ZNF730                0.495   PREDICTED: zinc finger protein 730 
ZNF730                0.495   PREDICTED: zinc finger protein 730 
ZNF254                0.495   zinc finger protein 254 
ZNF680                0.495   zinc finger protein 680 isoform 2 
ZNF680                0.495   zinc finger protein 680 isoform 1 
ZNF430                0.491   zinc finger protein 430 
ZNF493                0.477   zinc finger protein 493 isoform 2 
ZNF679                0.477   zinc finger protein 679 
ZNF728                0.473   PREDICTED: zinc finger protein 728 
ZNF728                0.473   PREDICTED: zinc finger protein 728 
ZNF728                0.473   PREDICTED: zinc finger protein 728 
ZNF429                0.473   zinc finger protein 429 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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