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Search of human proteins with 239748161
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748161 PREDICTED: hypothetical protein XP_002346544 [Homo
sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748161 PREDICTED: hypothetical protein XP_002346544 [Homo ... 301 2e-82
gi|239742059 PREDICTED: hypothetical protein XP_002342382 [Homo ... 301 2e-82
gi|239753502 PREDICTED: hypothetical protein [Homo sapiens] 285 1e-77
gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens] 39 0.002
gi|23199987 WD repeat domain 5B [Homo sapiens] 29 1.6
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 28 2.7
gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens] 28 3.5
gi|4502333 arginine vasopressin receptor 1B [Homo sapiens] 28 3.5
gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens] 27 4.6
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 27 4.6
gi|93102379 low density lipoprotein-related protein 1B precursor... 27 6.0
gi|169180010 PREDICTED: hypothetical protein [Homo sapiens] 27 7.9
gi|169178954 PREDICTED: hypothetical protein [Homo sapiens] 27 7.9
gi|169176365 PREDICTED: hypothetical protein [Homo sapiens] 27 7.9
gi|150456451 hypothetical protein LOC54914 [Homo sapiens] 27 7.9
>gi|239748161 PREDICTED: hypothetical protein XP_002346544 [Homo
sapiens]
Length = 145
Score = 301 bits (770), Expect = 2e-82
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60
MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL
Sbjct: 1 MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60
Query: 61 CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTQLV 120
CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTQLV
Sbjct: 61 CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTQLV 120
Query: 121 TSWQVHSLLFSAIGGLEMNWYPALC 145
TSWQVHSLLFSAIGGLEMNWYPALC
Sbjct: 121 TSWQVHSLLFSAIGGLEMNWYPALC 145
>gi|239742059 PREDICTED: hypothetical protein XP_002342382 [Homo
sapiens]
Length = 145
Score = 301 bits (770), Expect = 2e-82
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60
MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL
Sbjct: 1 MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60
Query: 61 CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTQLV 120
CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTQLV
Sbjct: 61 CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTQLV 120
Query: 121 TSWQVHSLLFSAIGGLEMNWYPALC 145
TSWQVHSLLFSAIGGLEMNWYPALC
Sbjct: 121 TSWQVHSLLFSAIGGLEMNWYPALC 145
>gi|239753502 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 285 bits (728), Expect = 1e-77
Identities = 138/140 (98%), Positives = 138/140 (98%)
Query: 1 MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60
MHSRHLKILSHHCCPVT LHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL
Sbjct: 1 MHSRHLKILSHHCCPVTILHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLL 60
Query: 61 CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTQLV 120
CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNST LV
Sbjct: 61 CKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNSTHLV 120
Query: 121 TSWQVHSLLFSAIGGLEMNW 140
TSWQVHSLLFSAIGGLEMNW
Sbjct: 121 TSWQVHSLLFSAIGGLEMNW 140
>gi|14589935 protocadherin 7 isoform c precursor [Homo sapiens]
Length = 1200
Score = 38.9 bits (89), Expect = 0.002
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 3 SRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLLCK 62
+RH K S P LH + + + + LPP NTF ++++ S C C+
Sbjct: 946 ARHYK--SSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQ 1003
Query: 63 SNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSS 107
+N+ F + S+ PQD +L + GL+ + SS
Sbjct: 1004 TNNKYSKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLEESETPSS 1048
>gi|23199987 WD repeat domain 5B [Homo sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 1.6
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 6 LKILSHHCCPVTTLHVNASLSLELSLSYSQL 36
LK LS H PV+ +H N S SL +S SY L
Sbjct: 160 LKTLSAHSDPVSAVHFNCSGSLIVSGSYDGL 190
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 28.1 bits (61), Expect = 2.7
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 9 LSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVT 50
LSHH C T LH+ + L + Q PP + R V VT
Sbjct: 372 LSHHHCAYTILHILSHLR-----PHEQRSPPGSSRELVMRVT 408
>gi|14589933 protocadherin 7 isoform b precursor [Homo sapiens]
Length = 1072
Score = 27.7 bits (60), Expect = 3.5
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 3 SRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLLCK 62
+RH K S P LH + + + + LPP NTF ++++ S C C+
Sbjct: 993 ARHYK--SSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQ 1050
Query: 63 SNSPLCPVLFSSLLHSIPRL 82
+N+ +S + IP +
Sbjct: 1051 TNNK-----YSKQVRCIPNI 1065
>gi|4502333 arginine vasopressin receptor 1B [Homo sapiens]
Length = 424
Score = 27.7 bits (60), Expect = 3.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 1 MHSRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPP 39
+ SRH +L+ CP T LSL LSL+ S P P
Sbjct: 372 LSSRHTTLLTRSSCPAT-------LSLSLSLTLSGRPRP 403
>gi|14589931 protocadherin 7 isoform a precursor [Homo sapiens]
Length = 1069
Score = 27.3 bits (59), Expect = 4.6
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 3 SRHLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLLCK 62
+RH K S P LH + + + + LPP NTF ++++ S C C+
Sbjct: 993 ARHYK--SSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQ 1050
Query: 63 SNS 65
+N+
Sbjct: 1051 TNN 1053
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 27.3 bits (59), Expect = 4.6
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 14 CPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLLCKSNSPLCPVLFS 73
CP T HV S + + PPP +LA L C S CPV S
Sbjct: 233 CPATQPHVVFPPSPQPHGPLASSPPPP-------DSSLAGLQC-------GSTTCPVPQS 278
Query: 74 SLLHSIPRLPQDRVASAL 91
S LH+ P RV S L
Sbjct: 279 SPLHNQVLPPPTRVISGL 296
>gi|93102379 low density lipoprotein-related protein 1B precursor
[Homo sapiens]
Length = 4599
Score = 26.9 bits (58), Expect = 6.0
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 58 LLLCKSNSPLCPVLFSSLLHSIPRLPQDRVASALNEFFSPGLQGPQRSSSYYFMDCMNST 117
+ +C SN +C L LH+ + D +A L FF+ G MD MN T
Sbjct: 307 IFVCNSNGSVCVTLIDLELHNPKAIAVDPIAGKL--FFTD--YGNVAKVERCDMDGMNRT 362
Query: 118 QLVTS 122
+++ S
Sbjct: 363 RIIDS 367
>gi|169180010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 26.6 bits (57), Expect = 7.9
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 5 HLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLLCKSN 64
HL L C P T +H L L L Y PP F + +F CL LL +
Sbjct: 37 HLPFLLLPCWPQTAMHGCMKEDLNLDLFY----PPLPFFSPLF--------CLHLLLSLS 84
Query: 65 SPLCPVLFSSLLHS 78
S P FS + HS
Sbjct: 85 S---PTGFSVISHS 95
>gi|169178954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 26.6 bits (57), Expect = 7.9
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 5 HLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLLCKSN 64
HL L C P T +H L L L Y PP F + +F CL LL +
Sbjct: 37 HLPFLLLPCWPQTAMHGCMKEDLNLDLFY----PPLPFFSPLF--------CLHLLLSLS 84
Query: 65 SPLCPVLFSSLLHS 78
S P FS + HS
Sbjct: 85 S---PAGFSVISHS 95
>gi|169176365 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 26.6 bits (57), Expect = 7.9
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 5 HLKILSHHCCPVTTLHVNASLSLELSLSYSQLPPPNTFRAQVFSVTLASLPCLLLLCKSN 64
HL L C P T +H L L L Y PP F + +F CL LL +
Sbjct: 37 HLPFLLLPCWPQTAMHGCMKEDLNLDLFY----PPLPFFSPLF--------CLHLLLSLS 84
Query: 65 SPLCPVLFSSLLHS 78
S P FS + HS
Sbjct: 85 S---PTGFSVISHS 95
>gi|150456451 hypothetical protein LOC54914 [Homo sapiens]
Length = 1801
Score = 26.6 bits (57), Expect = 7.9
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 58 LLLCKSNSPLCPVLFSSLLHSIPRLPQDRV 87
+L+ K PL P+L++ +L+++P+L +V
Sbjct: 492 VLMFKLGRPLEPILYNDILYTLPKLGVHKV 521
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,991,967
Number of Sequences: 37866
Number of extensions: 243198
Number of successful extensions: 787
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 18
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.