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Search of human proteins with 239747938
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747938 PREDICTED: hypothetical protein XP_002346476 [Homo
sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753371 PREDICTED: hypothetical protein [Homo sapiens] 246 4e-66
gi|239747938 PREDICTED: hypothetical protein XP_002346476 [Homo ... 246 4e-66
gi|239741833 PREDICTED: hypothetical protein XP_002342339 [Homo ... 246 4e-66
gi|32307132 NFS1 nitrogen fixation 1 [Homo sapiens] 38 0.002
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 38 0.002
gi|56118234 proline rich 6 [Homo sapiens] 36 0.006
gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens] 36 0.006
gi|73476377 LBXCOR1 homolog [Homo sapiens] 35 0.017
gi|163965366 nascent polypeptide-associated complex alpha subuni... 34 0.022
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 34 0.029
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 34 0.029
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 33 0.038
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 33 0.050
gi|14042947 testis-specific serine kinase 1 [Homo sapiens] 33 0.050
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.050
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 33 0.050
gi|18079216 CASK interacting protein 1 [Homo sapiens] 33 0.065
gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sap... 33 0.065
gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens] 33 0.065
gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens] 33 0.065
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 33 0.065
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 32 0.085
gi|116734702 homeobox D13 [Homo sapiens] 32 0.085
gi|239754514 PREDICTED: hypothetical protein [Homo sapiens] 32 0.085
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 32 0.085
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 32 0.085
gi|13540521 basic helix-loop-helix domain containing, class B, 3... 32 0.085
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 32 0.085
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 32 0.085
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 32 0.085
>gi|239753371 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 246 bits (627), Expect = 4e-66
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MIIYVNQIHHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAAAV 60
MIIYVNQIHHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAAAV
Sbjct: 1 MIIYVNQIHHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAAAV 60
Query: 61 AAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPRRG 119
AAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPRRG
Sbjct: 61 AAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPRRG 119
>gi|239747938 PREDICTED: hypothetical protein XP_002346476 [Homo
sapiens]
Length = 119
Score = 246 bits (627), Expect = 4e-66
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MIIYVNQIHHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAAAV 60
MIIYVNQIHHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAAAV
Sbjct: 1 MIIYVNQIHHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAAAV 60
Query: 61 AAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPRRG 119
AAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPRRG
Sbjct: 61 AAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPRRG 119
>gi|239741833 PREDICTED: hypothetical protein XP_002342339 [Homo
sapiens]
Length = 119
Score = 246 bits (627), Expect = 4e-66
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MIIYVNQIHHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAAAV 60
MIIYVNQIHHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAAAV
Sbjct: 1 MIIYVNQIHHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAAAV 60
Query: 61 AAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPRRG 119
AAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPRRG
Sbjct: 61 AAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPRRG 119
>gi|32307132 NFS1 nitrogen fixation 1 [Homo sapiens]
Length = 457
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/55 (45%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 50 RAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSA-SRPTRAGQESGPFLPP 103
RAA AA AV AA P +P G RL G P+SA T A E GP L P
Sbjct: 4 RAAWRRAAVAVTAAPGPKPAAPTRGLRLRVGDRAPQSAVPADTAAAPEVGPVLRP 58
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 38.1 bits (87), Expect = 0.002
Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 36 PTAALFRLPRRGADRAALVAAAAAVAAASAAP-PGSPALGNRLHAGGPL---PRSASRPT 91
PT A P A A A AA AAA+A P PG G R PL P + + P
Sbjct: 129 PTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPP 188
Query: 92 RAGQESGPF-LPPPAARAELPKIPHP 116
+GP PPPA A P +P P
Sbjct: 189 AVAPPAGPRRAPPPAVAAREPPLPPP 214
Score = 37.0 bits (84), Expect = 0.003
Identities = 32/89 (35%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 38 AALFRLPRRGAD--------RAALVAAAAAVAAASAAPPGSPALGNRLHAGGPL--PRSA 87
AA + PRRGA R A AAAAA + APP PA + A P PR+A
Sbjct: 96 AARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPA---PVAAAAPARAPRAA 152
Query: 88 SRPTRAGQESGPFLPPPAARAELPKIPHP 116
+ A GP P P A+ P P
Sbjct: 153 AAAATAPPSPGPAQPGPRAQRAAPLAAPP 181
Score = 27.7 bits (60), Expect = 2.1
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 9 HHLLGRESRRRQLQVHHDELWTVCWGSPTAALFRLPRRGADRAALVAAAA----AVAAAS 64
HH L E R Q + WT C R P G+ + + AA A+
Sbjct: 361 HHQLNGE-RGPQSAKERVKEWTPCGPHQGQDEGRGPAPGSGTRQVFSMAAMNKEGGTASV 419
Query: 65 AAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIP 114
A P SP+ P+P +P G + PF PP R E P P
Sbjct: 420 ATGPDSPS---------PVPLPPGKPALPGADGTPFGCPP-GRKEKPSDP 459
>gi|56118234 proline rich 6 [Homo sapiens]
Length = 272
Score = 36.2 bits (82), Expect = 0.006
Identities = 30/81 (37%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 46 RGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPL----------PRSASRPTRAGQ 95
RG R+ AA AA AAA+ AP + + AG PR RA Q
Sbjct: 13 RGQKRSGASAAPAASAAAALAPSATRTRRSASQAGSKSQAVEKPPSEKPRLRRSSPRA-Q 71
Query: 96 ESGPFLPPPAARAELPKIPHP 116
E GP PPP A LP P P
Sbjct: 72 EEGPGEPPPPELALLPPPPPP 92
>gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens]
Length = 461
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 40 LFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGP 99
L R PRR L+ A A A+AA G P GG +P R A P
Sbjct: 23 LERAPRRSVGELRLLFEARCAAVAAAAAAGEPRARGAKRRGGQVPNGLPRAPPA-----P 77
Query: 100 FLPPPAARAELPKIP 114
+P AE P +P
Sbjct: 78 VIPQLTVTAEEPDVP 92
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 34.7 bits (78), Expect = 0.017
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 48 ADRAALVAAAAAVAAASAAPP----GSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPP 103
A A AAAAA AA S AP PA + L A P + SR + LPP
Sbjct: 470 AAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLDEDGTDEALPP 529
Query: 104 PAARAELPKIPHPRRG 119
P A P P R+G
Sbjct: 530 PLAPLPPPPPPPARKG 545
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.3 bits (77), Expect = 0.022
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 34 GSPT--AALFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPT 91
G+PT AA P+ G +L A AA +P G PA + G P+P +A+ P+
Sbjct: 1055 GAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPS--PKGAPMPPAATPPS 1112
Query: 92 -RAGQESGPFLPPPAARAELPKIPHPRRG 119
+ G + P P A P P P+ G
Sbjct: 1113 PKGGLATPPHKGAPTTPAATP--PSPKGG 1139
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 33.9 bits (76), Expect = 0.029
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 44 PRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPP 103
P R + +LVA A+ A+ P L H+ GP S P RA G L P
Sbjct: 997 PPRQPEPPSLVAGASGGASPVGFTPRG-GLSPPGHSPGPPRTFPSAPPRASGSHGSLLLP 1055
Query: 104 PAARAELPKIPHPRRG 119
PA+ P++P RRG
Sbjct: 1056 PASSPPPPQVPQ-RRG 1070
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.9 bits (76), Expect = 0.029
Identities = 33/101 (32%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 14 RESRRRQLQVHHDELWTVCWGSPTAALFRLPRR-GADRAALVAAAAAVAAASAAPPGSPA 72
RE R++Q +E C L RL + GA L A AA AA + P PA
Sbjct: 471 REEEERRMQ---EERRAAC----AEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPA 523
Query: 73 LGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKI 113
+ L A P P AS PT + P PPA P +
Sbjct: 524 VPKELPAP-PAPPPASAPTPETEPEEPAQAPPAQSTPTPGV 563
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 33.5 bits (75), Expect = 0.038
Identities = 28/76 (36%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 31 VCWGSPTAALFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRP 90
+ WGSP A P G A +A AA A A PG G R H GGP
Sbjct: 111 LAWGSPQPA--PRPAPGRSSALALAGGAAPGVARAQRPGGS--GGRSHPGGP------GS 160
Query: 91 TRAGQESGPFLPPPAA 106
R G GP PAA
Sbjct: 161 PRGGGTVGPGDRGPAA 176
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 33.1 bits (74), Expect = 0.050
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 55 AAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGP---FLPPPAARA 108
AA VA + A P + G+R H P PRSAS A S P F+ PP++RA
Sbjct: 11 AAPPGVAESPARPRVNEQWGSRAH---PNPRSASSAAAAASSSFPPPGFIHPPSSRA 64
>gi|14042947 testis-specific serine kinase 1 [Homo sapiens]
Length = 367
Score = 33.1 bits (74), Expect = 0.050
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 23/122 (18%)
Query: 8 IHHLLGRESRRRQLQVHHDELWTVCW------GSPTAALFR------------LPRRGAD 49
I+H+L + RR +H DE+ + CW GSP+ A+ + P G+D
Sbjct: 249 IYHMLQPDVNRR---LHIDEILSHCWMQPKARGSPSVAINKEGESSRGTEPLWTPEPGSD 305
Query: 50 RAALVAAAAAVAAASAAPPGSPALGNRLHAG--GPLPRSASRPTRAGQESGPFLPPPAAR 107
+ + A A P + G + + S+P+ E GP PP R
Sbjct: 306 KKSATKLEPEGEAQPQAQPETKPEGTAMQMSRQSEILGFPSKPSTMETEEGPPQQPPETR 365
Query: 108 AE 109
A+
Sbjct: 366 AQ 367
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.1 bits (74), Expect = 0.050
Identities = 38/104 (36%), Positives = 46/104 (44%), Gaps = 30/104 (28%)
Query: 26 DELWTVCWGSPTAALFRLPRRGADRAALV-AAAAAVAAASAAPP--------GSPALGNR 76
D+LWT RR ++R L A+AAA A S AP G P L R
Sbjct: 1991 DDLWT--------------RRRSERIFLHDASAAAPAPVSTAPATKTSRCAKGGP-LSPR 2035
Query: 77 LHAGGPLPRSASRPTRAGQESGP--FLPPPAARAELP---KIPH 115
AG R R + G+E+GP LPPP A A LP + PH
Sbjct: 2036 KDAGRAKDRKDPRKKKKGKEAGPGAGLPPPRAPA-LPSEARAPH 2078
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 33.1 bits (74), Expect = 0.050
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 36 PTAALFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQ 95
P+A P G AA AAAAA AA PP P G A G RA +
Sbjct: 28 PSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDAQAAG--------AERAEE 79
Query: 96 ESGP 99
+GP
Sbjct: 80 AAGP 83
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 32.7 bits (73), Expect = 0.065
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 34 GSPTAALFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRA 93
GSPT ++P G + A S PP P + A LP ++ P+ A
Sbjct: 1241 GSPTPTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPA 1300
Query: 94 GQESGPFLPPPAARAELPKIP 114
P PPAA A+ P P
Sbjct: 1301 ---PSPARQPPAALAKPPGTP 1318
Score = 26.6 bits (57), Expect = 4.7
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 56 AAAAVAAASAAPPGSP 71
AAAA AAA+AAPP P
Sbjct: 1345 AAAAAAAAAAAPPAPP 1360
Score = 26.2 bits (56), Expect = 6.1
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 35 SPTAALFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGN 75
SP A +P + RAA AAAAA AAA APP + G+
Sbjct: 1330 SPGAPALHVPAK-PPRAA--AAAAAAAAAPPAPPEGASPGD 1367
>gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo
sapiens]
Length = 373
Score = 32.7 bits (73), Expect = 0.065
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 24 HHDELWTVCWGSPT-AALFRLPRRGADRAALVAAAAAVAAASAA---PPGSPALGNRLHA 79
H + T WG T A + LP L A V P G+PA+ H
Sbjct: 70 HFLAISTTPWGRKTPACISELPTSSGTAQPLANAVCEVQTVPGPGLRPQGTPAMRAPSHK 129
Query: 80 GGP---------LPRSASRPTRAGQESGPFLPPPAA 106
G P P++ + + G GP PPPAA
Sbjct: 130 GTPPTPNPWGPEQPQNRHKHPKKGVTGGPSPPPPAA 165
>gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]
Length = 189
Score = 32.7 bits (73), Expect = 0.065
Identities = 28/72 (38%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 34 GSPTAALFRLPRRGADRAALVAAAAA--VAAASAAPPGSPALGNRLHAGGPLPRSASRPT 91
GS T A RL R A A AAAA ASAAPP SP PRS + P
Sbjct: 129 GSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPP-----------PRSGTAP- 176
Query: 92 RAGQESGPFLPP 103
+ P PP
Sbjct: 177 -PANRTAPATPP 187
>gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens]
Length = 356
Score = 32.7 bits (73), Expect = 0.065
Identities = 23/73 (31%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 46 RGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPA 105
RG R AA A + + GS P PT Q P PPP
Sbjct: 258 RGERRGGRAAAPAPMVRYCSGAQGSTL---------SFPPGVPAPTAVSQRPSPSGPPP- 307
Query: 106 ARAELPKIPHPRR 118
R +P PHPRR
Sbjct: 308 -RCSVPGCPHPRR 319
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 32.7 bits (73), Expect = 0.065
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 24 HHDELWTVCWGSPT-AALFRLPRRGADRAALVAAAAAVAAASAA---PPGSPALGNRLHA 79
H + T WG T A + LP L A V P G+PA+ H
Sbjct: 70 HFLAISTTPWGRKTPACISELPTSSGTAQPLANAVCEVQTVPGPGLRPQGTPAMRAPSHK 129
Query: 80 GGP---------LPRSASRPTRAGQESGPFLPPPAA 106
G P P++ + + G GP PPPAA
Sbjct: 130 GTPPTPNPWGPEQPQNRHKHPKKGVTGGPSPPPPAA 165
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 32.3 bits (72), Expect = 0.085
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 45 RRGADRAALVAAAAAVAAASAAPPGSPALGNRLHA----GGPLPRSASRPTRAGQESGPF 100
+RGA A+ AAV A S P S +L +R+H+ G P R + SGP
Sbjct: 1029 QRGAQPLAVAKELAAVKAPS---PPSQSLYDRVHSSALFGAICPPLCPRSSACSAASGPH 1085
Query: 101 LPPPAARAELPKI 113
L PA LP +
Sbjct: 1086 LTMPARPPSLPPL 1098
>gi|116734702 homeobox D13 [Homo sapiens]
Length = 343
Score = 32.3 bits (72), Expect = 0.085
Identities = 32/84 (38%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 32 CWGSPTAALFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPT 91
C G +A +F G RAA AAAAA AAA+AA G G G S+S
Sbjct: 40 CRGFLSAPVFAGTHSG--RAA--AAAAAAAAAAAAASGFAYPGTSERTGSSSSSSSSAVV 95
Query: 92 RAGQESGPF----LPPPAARAELP 111
A E+ P P PAA A P
Sbjct: 96 AARPEAPPAKECPAPTPAAAAAAP 119
Score = 29.6 bits (65), Expect = 0.55
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 57 AAAVAAASAAPPGSPALGNRLHAG 80
A AAA+AAPP +PALG H G
Sbjct: 109 APTPAAAAAAPPSAPALGYGYHFG 132
>gi|239754514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 32.3 bits (72), Expect = 0.085
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 67 PPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELPKIPHPR 117
PP SP +R GG R A+ R Q G PP +E P+ HPR
Sbjct: 20 PPPSPDSSSR---GGSARRRAAPAPRCPQRLGLLRPPGPTNSEFPRAWHPR 67
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 32.3 bits (72), Expect = 0.085
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 13 GRESRRRQLQVHHDE---LWTVCWGSPTAALFRLPRRGADRAALVAAAAAVAAASAAPPG 69
G++ + QLQ H + G+P RG+ RAA AA++
Sbjct: 238 GQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRGSGRAATTTRPQTTPAAASPDLP 297
Query: 70 SPALGNRLHAGGPLPRSASRPTRAGQESGPFLPPPAARAELP----KIPHPRR 118
PA +R PR+ RP A + P P RA P + P PRR
Sbjct: 298 QPAERSRGEPRPAEPRAPPRPPPAARRPPPATAPSPRRAGSPPTREEEPRPRR 350
>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
sapiens]
Length = 761
Score = 32.3 bits (72), Expect = 0.085
Identities = 34/85 (40%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
Query: 35 SPTAALFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRAG 94
+PTA F RRG R A A S PP RL A PLPR P G
Sbjct: 323 TPTAVAFC--RRGFFRPA---------AFSPPPP-------RLFA--PLPRRLFHPHCRG 362
Query: 95 QESGPFLPPPAARAEL-PKIPHPRR 118
S PPPAA A P++ HPRR
Sbjct: 363 FLSPRLFPPPAAAAFCPPRLFHPRR 387
>gi|13540521 basic helix-loop-helix domain containing, class B, 3
[Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.085
Identities = 27/81 (33%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 36 PTAALFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQ 95
P AA P A AAAAA AAA+AA P L + L + P +AG
Sbjct: 378 PAAAAAPFPLLYPGIPAPAAAAAAAAAAAAAAAAFPCLSSVL---------SPPPEKAGA 428
Query: 96 ESGPFLPPPAARAELPKIPHP 116
+ LP A P HP
Sbjct: 429 AAATLLPHEVAPLGAPHPQHP 449
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 32.3 bits (72), Expect = 0.085
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 52 ALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFL----PPPAAR 107
AL AAAA AA+AAP +PA + A P +++ P+ + + S P + P PAA+
Sbjct: 529 ALAAAAAPALAAAAAPAPAPAAAPAV-AAAPAAAASAAPSHSQKPSVPLIQASRPCPAAQ 587
Score = 31.6 bits (70), Expect = 0.14
Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 34 GSPTAALFRLPRRGADRAALVAAAAAVAAASAAPP-----GSPALGNRLHAGGPLPRSAS 88
GSP F A AA AAAAA AAA+A P +PAL A P +A+
Sbjct: 486 GSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALA---AAAAPALAAAA 542
Query: 89 RPTRAGQESGPFLPPPAARA 108
P A + PAA A
Sbjct: 543 APAPAPAAAPAVAAAPAAAA 562
Score = 30.0 bits (66), Expect = 0.42
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 36 PTAALFRLPRRGADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQ 95
P A L R + AA+ AAAAA AAA+AA + A P +A+ P A
Sbjct: 482 PQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAA 541
Query: 96 ESGPFLPPPAARAELPKIP 114
+ P PAA + P
Sbjct: 542 AAP--APAPAAAPAVAAAP 558
Score = 26.2 bits (56), Expect = 6.1
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 35 SPTAALFRLPRRGADRAALVAAAA-----AVAAASA-APPGSPALGNRLHAGGPLPRSAS 88
S AA+ A AA AAAA A AAA A A +PAL A P P A+
Sbjct: 494 SAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALA---AAAAPAPAPAA 550
Query: 89 RPTRAGQESGPFLPPPAARAELPKIP 114
P A + P + ++ P +P
Sbjct: 551 APAVAAAPAAAASAAP-SHSQKPSVP 575
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 32.3 bits (72), Expect = 0.085
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 48 ADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRA--------GQESGP 99
A AL A A S+APPG+P +L GP P + + P + Q P
Sbjct: 182 AQPPALQAPTGVTPAPSSAPPGTP----QLPTPGPTPSATAVPPQGSPTASQAPNQPQAP 237
Query: 100 FLPPPAARAELPKIPHPRR 118
P P + HP+R
Sbjct: 238 TAPVPHTHIQQAPALHPQR 256
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 32.3 bits (72), Expect = 0.085
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 48 ADRAALVAAAAAVAAASAAPPGSPALGNRLHAGGPLPRSASRPTRA--------GQESGP 99
A AL A A S+APPG+P +L GP P + + P + Q P
Sbjct: 736 AQPPALQAPTGVTPAPSSAPPGTP----QLPTPGPTPSATAVPPQGSPTASQAPNQPQAP 791
Query: 100 FLPPPAARAELPKIPHPRR 118
P P + HP+R
Sbjct: 792 TAPVPHTHIQQAPALHPQR 810
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,086,050
Number of Sequences: 37866
Number of extensions: 354816
Number of successful extensions: 4447
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 416
Number of HSP's that attempted gapping in prelim test: 3251
Number of HSP's gapped (non-prelim): 1273
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.