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Search of human proteins with 239747398
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747398 PREDICTED: similar to hCG1648021 [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747398 PREDICTED: similar to hCG1648021 [Homo sapiens] 383 e-107
gi|239741224 PREDICTED: similar to hCG1648021 [Homo sapiens] 383 e-107
gi|169160876 PREDICTED: similar to hCG1648021 [Homo sapiens] 381 e-106
gi|20149498 ferritin, light polypeptide [Homo sapiens] 116 9e-27
gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens] 70 8e-13
gi|29126241 ferritin mitochondrial [Homo sapiens] 66 2e-11
gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens] 60 1e-09
gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens] 55 3e-08
gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens] 55 3e-08
gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo sap... 55 3e-08
gi|145279222 WD repeat domain 66 [Homo sapiens] 32 0.40
gi|239753190 PREDICTED: similar to proliferation-inducing protei... 30 0.89
gi|223029476 NEL-like protein 2 isoform d [Homo sapiens] 30 1.5
gi|223029474 NEL-like protein 2 isoform c [Homo sapiens] 30 1.5
gi|223029472 NEL-like protein 2 isoform b precursor [Homo sapiens] 30 1.5
gi|223029470 NEL-like protein 2 isoform a [Homo sapiens] 30 1.5
gi|5453766 NEL-like protein 2 isoform b precursor [Homo sapiens] 30 1.5
gi|239747764 PREDICTED: hypothetical protein XP_002348243 [Homo ... 29 2.6
gi|239741630 PREDICTED: hypothetical protein XP_002342267 [Homo ... 29 2.6
gi|4502477 beta-transducin repeat containing protein isoform 2 [... 28 5.7
gi|167555125 low density lipoprotein receptor-related protein 3 ... 28 5.7
gi|16117783 beta-transducin repeat containing protein isoform 1 ... 28 5.7
gi|149588708 transmembrane protein 91 isoform c [Homo sapiens] 28 5.7
gi|149588687 transmembrane protein 91 isoform c [Homo sapiens] 28 5.7
gi|194018492 transmembrane protease, serine 11F [Homo sapiens] 27 7.5
>gi|239747398 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 383 bits (983), Expect = e-107
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MRKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS 60
MRKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS
Sbjct: 1 MRKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS 60
Query: 61 SPLAISGTIFLAIFCFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHLRA 120
SPLAISGTIFLAIFCFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHLRA
Sbjct: 61 SPLAISGTIFLAIFCFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHLRA 120
Query: 121 SYICLCLGFYSHRDNVSLEGMGHFGELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
SYICLCLGFYSHRDNVSLEGMGHFGELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD
Sbjct: 121 SYICLCLGFYSHRDNVSLEGMGHFGELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
Query: 181 EYG 183
EYG
Sbjct: 181 EYG 183
>gi|239741224 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 383 bits (983), Expect = e-107
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MRKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS 60
MRKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS
Sbjct: 1 MRKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS 60
Query: 61 SPLAISGTIFLAIFCFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHLRA 120
SPLAISGTIFLAIFCFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHLRA
Sbjct: 61 SPLAISGTIFLAIFCFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHLRA 120
Query: 121 SYICLCLGFYSHRDNVSLEGMGHFGELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
SYICLCLGFYSHRDNVSLEGMGHFGELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD
Sbjct: 121 SYICLCLGFYSHRDNVSLEGMGHFGELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
Query: 181 EYG 183
EYG
Sbjct: 181 EYG 183
>gi|169160876 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 381 bits (979), Expect = e-106
Identities = 182/183 (99%), Positives = 182/183 (99%)
Query: 1 MRKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS 60
MRKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS
Sbjct: 1 MRKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS 60
Query: 61 SPLAISGTIFLAIFCFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHLRA 120
SPL ISGTIFLAIFCFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHLRA
Sbjct: 61 SPLTISGTIFLAIFCFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHLRA 120
Query: 121 SYICLCLGFYSHRDNVSLEGMGHFGELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
SYICLCLGFYSHRDNVSLEGMGHFGELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD
Sbjct: 121 SYICLCLGFYSHRDNVSLEGMGHFGELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
Query: 181 EYG 183
EYG
Sbjct: 181 EYG 183
>gi|20149498 ferritin, light polypeptide [Homo sapiens]
Length = 175
Score = 116 bits (291), Expect = 9e-27
Identities = 60/91 (65%), Positives = 72/91 (79%), Gaps = 1/91 (1%)
Query: 94 MSSQIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEGMGH-FGELAEEKR 152
MSSQI QNYST+ EA +N LVNL+L+ASY L LGFY RD+V+LEG+ H F ELAEEKR
Sbjct: 1 MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKR 60
Query: 153 QGTERFLKMQSQHGSCALFHDIQMPAQDEYG 183
+G ER LKMQ+Q G ALF DI+ PA+DE+G
Sbjct: 61 EGYERLLKMQNQRGGRALFQDIKKPAEDEWG 91
>gi|56682959 ferritin, heavy polypeptide 1 [Homo sapiens]
Length = 183
Score = 70.5 bits (171), Expect = 8e-13
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 95 SSQIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEGMG-HFGELAEEKRQ 153
+SQ+ QNY + EA INR +NL L ASY+ L + +Y RD+V+L+ +F + E+R+
Sbjct: 6 TSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEERE 65
Query: 154 GTERFLKMQSQHGSCALFHDIQMPAQDEY 182
E+ +K+Q+Q G DI+ P D++
Sbjct: 66 HAEKLMKLQNQRGGRIFLQDIKKPDCDDW 94
>gi|29126241 ferritin mitochondrial [Homo sapiens]
Length = 242
Score = 65.9 bits (159), Expect = 2e-11
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 96 SQIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEGMG-HFGELAEEKRQG 154
S++ QN+ + EA INR +NL L ASY+ L + +Y RD+V+L +F + E+ +
Sbjct: 66 SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEH 125
Query: 155 TERFLKMQSQHGSCALFHDIQMPAQDEY 182
E+ +++Q+Q G DI+ P QD++
Sbjct: 126 AEKLMRLQNQRGGRIRLQDIKKPEQDDW 153
>gi|13994244 ferritin, heavy polypeptide-like 17 [Homo sapiens]
Length = 183
Score = 60.1 bits (144), Expect = 1e-09
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 96 SQIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEG-MGHFGELAEEKRQG 154
SQ+ Q Y T +A IN + L L SY+ L + FY +RD+V+LE +F L+++K +
Sbjct: 7 SQVRQKYDTNCDAAINSHITLELYTSYLYLSMAFYFNRDDVALENFFRYFLRLSDDKMEH 66
Query: 155 TERFLKMQSQHGSCALFHDIQMP 177
++ +++Q+ G HDI+ P
Sbjct: 67 AQKLMRLQNLRGGHICLHDIRKP 89
>gi|169217004 PREDICTED: similar to hCG1799751 [Homo sapiens]
Length = 213
Score = 55.1 bits (131), Expect = 3e-08
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 90 CQPTMSS---QIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEGMGH-FG 145
CQ +++ Q+ QNY + +A +N VNL L AS + L + FY RD+V+LE F
Sbjct: 40 CQRPLTAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFL 99
Query: 146 ELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
++EKR+ ++ + +Q+ G DI P ++
Sbjct: 100 SQSQEKREHAQKLIMLQNLRGGRICLPDIWKPERE 134
>gi|239752290 PREDICTED: similar to hCG1799751 [Homo sapiens]
Length = 213
Score = 55.1 bits (131), Expect = 3e-08
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 90 CQPTMSS---QIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEGMGH-FG 145
CQ +++ Q+ QNY + +A +N VNL L AS + L + FY RD+V+LE F
Sbjct: 40 CQRPLTAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFL 99
Query: 146 ELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
++EKR+ ++ + +Q+ G DI P ++
Sbjct: 100 SQSQEKREHAQKLIMLQNLRGGRICLPDIWKPERE 134
>gi|239746801 PREDICTED: hypothetical protein LOC139431 [Homo
sapiens]
Length = 213
Score = 55.1 bits (131), Expect = 3e-08
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 90 CQPTMSS---QIHQNYSTEGEATINRLVNLHLRASYICLCLGFYSHRDNVSLEGMGH-FG 145
CQ +++ Q+ QNY + +A +N VNL L AS + L + FY RD+V+LE F
Sbjct: 40 CQRPLTAPLWQVRQNYHPDCDAAVNSHVNLELHASCVYLSMAFYLDRDDVTLERFSRCFL 99
Query: 146 ELAEEKRQGTERFLKMQSQHGSCALFHDIQMPAQD 180
++EKR+ ++ + +Q+ G DI P ++
Sbjct: 100 SQSQEKREHAQKLIMLQNLRGGRICLPDIWKPERE 134
>gi|145279222 WD repeat domain 66 [Homo sapiens]
Length = 1149
Score = 31.6 bits (70), Expect = 0.40
Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 21/147 (14%)
Query: 15 LCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGISSPLAISGTIFLAIF 74
LC+ ++R +A +GP+ V++ G T+F + GI + +LA
Sbjct: 305 LCVSEDRRWIATADKGPDCLVIIWDSFTGIPVHTIFDSCPEGNGIMAMAMTHDAKYLATI 364
Query: 75 --------CFWDQPTPFLWLAPSCQPTMSSQIHQNYSTEGEATINRLVNLHL--RASYIC 124
C W W P + ++ Y + T N N L +
Sbjct: 365 SDAEVQKVCIWK------WTLAVETPACTLELPTEYGVQNYVTFNPTNNKELVSNSKTRA 418
Query: 125 LCLGFYSHRDNVSLEGMGHFGELAEEK 151
+ +Y RD + H L EK
Sbjct: 419 IYYAWYEERDT-----LAHSAPLLTEK 440
>gi|239753190 PREDICTED: similar to proliferation-inducing protein
25 [Homo sapiens]
Length = 65
Score = 30.4 bits (67), Expect = 0.89
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 6 HSSLGDRARLCLKKER 21
HSSLG+R RLCLKK++
Sbjct: 4 HSSLGNRVRLCLKKKK 19
>gi|223029476 NEL-like protein 2 isoform d [Homo sapiens]
Length = 839
Score = 29.6 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 75 CFWDQPTPFLWLAPSCQPTMSSQ-IHQNYST 104
C + PT L+ P C P +SSQ +HQN T
Sbjct: 700 CDCENPTVDLFCCPECDPRLSSQCLHQNGET 730
>gi|223029474 NEL-like protein 2 isoform c [Homo sapiens]
Length = 815
Score = 29.6 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 75 CFWDQPTPFLWLAPSCQPTMSSQ-IHQNYST 104
C + PT L+ P C P +SSQ +HQN T
Sbjct: 676 CDCENPTVDLFCCPECDPRLSSQCLHQNGET 706
>gi|223029472 NEL-like protein 2 isoform b precursor [Homo sapiens]
Length = 816
Score = 29.6 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 75 CFWDQPTPFLWLAPSCQPTMSSQ-IHQNYST 104
C + PT L+ P C P +SSQ +HQN T
Sbjct: 677 CDCENPTVDLFCCPECDPRLSSQCLHQNGET 707
>gi|223029470 NEL-like protein 2 isoform a [Homo sapiens]
Length = 866
Score = 29.6 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 75 CFWDQPTPFLWLAPSCQPTMSSQ-IHQNYST 104
C + PT L+ P C P +SSQ +HQN T
Sbjct: 727 CDCENPTVDLFCCPECDPRLSSQCLHQNGET 757
>gi|5453766 NEL-like protein 2 isoform b precursor [Homo sapiens]
Length = 816
Score = 29.6 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 75 CFWDQPTPFLWLAPSCQPTMSSQ-IHQNYST 104
C + PT L+ P C P +SSQ +HQN T
Sbjct: 677 CDCENPTVDLFCCPECDPRLSSQCLHQNGET 707
>gi|239747764 PREDICTED: hypothetical protein XP_002348243 [Homo
sapiens]
Length = 65
Score = 28.9 bits (63), Expect = 2.6
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 6 HSSLGDRARLCLKKER 21
HSSLG+R RLCL+K++
Sbjct: 4 HSSLGNRVRLCLEKKK 19
>gi|239741630 PREDICTED: hypothetical protein XP_002342267 [Homo
sapiens]
Length = 65
Score = 28.9 bits (63), Expect = 2.6
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 6 HSSLGDRARLCLKKER 21
HSSLG+R RLCL+K++
Sbjct: 4 HSSLGNRVRLCLEKKK 19
>gi|4502477 beta-transducin repeat containing protein isoform 2
[Homo sapiens]
Length = 569
Score = 27.7 bits (60), Expect = 5.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 2 RKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS 60
+ SL + ARLCL +E LA+ + E CV + +GT ++ +P L S
Sbjct: 37 KNSLRQTYNSCARLCLNQETVCLASTAMKTENCVAKTKLANGT--SSMIVPKQRKLSAS 93
>gi|167555125 low density lipoprotein receptor-related protein 3
[Homo sapiens]
Length = 770
Score = 27.7 bits (60), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 30 GPEICVLLQQCLDGTDPGTLFLPASDHLGISSP 62
GP C + +C DG+D G PAS+ G P
Sbjct: 181 GPWQCNTVDECGDGSDEGNCSAPASEPPGSLCP 213
>gi|16117783 beta-transducin repeat containing protein isoform 1
[Homo sapiens]
Length = 605
Score = 27.7 bits (60), Expect = 5.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 2 RKSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDPGTLFLPASDHLGIS 60
+ SL + ARLCL +E LA+ + E CV + +GT ++ +P L S
Sbjct: 73 KNSLRQTYNSCARLCLNQETVCLASTAMKTENCVAKTKLANGT--SSMIVPKQRKLSAS 129
>gi|149588708 transmembrane protein 91 isoform c [Homo sapiens]
Length = 133
Score = 27.7 bits (60), Expect = 5.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 42 DGTDPGTLFLPASDHLGIS--SPLAISGTIFLAIFCFWDQPTPFLWLAPSCQP 92
DG + FLP DHLG++ S L + +A FC + P +P C+P
Sbjct: 82 DGGSRLSPFLP-HDHLGLAVFSMLCCFWPVGIAAFCLAQKTRPSCPYSPHCEP 133
>gi|149588687 transmembrane protein 91 isoform c [Homo sapiens]
Length = 133
Score = 27.7 bits (60), Expect = 5.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 42 DGTDPGTLFLPASDHLGIS--SPLAISGTIFLAIFCFWDQPTPFLWLAPSCQP 92
DG + FLP DHLG++ S L + +A FC + P +P C+P
Sbjct: 82 DGGSRLSPFLP-HDHLGLAVFSMLCCFWPVGIAAFCLAQKTRPSCPYSPHCEP 133
>gi|194018492 transmembrane protease, serine 11F [Homo sapiens]
Length = 438
Score = 27.3 bits (59), Expect = 7.5
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 3 KSLHSSLGDRARLCLKKERNTLAAHSEGPEICVLLQQCLDGTDP--GTLFLPASDHLGIS 60
K + + L R + + L A S I + ++G P +L L S H +
Sbjct: 176 KKMRNLLNSRCGIRMTSSNMPLPASSSTQRIVQGRETAMEGEWPWQASLQLIGSGHQCGA 235
Query: 61 SPLAISGTIFL-AIFCFWDQPTPFLWLA--------PSCQPTMSSQI-HQNYSTEGEATI 110
S IS T L A CFW P W+A P+ + + I H+NY E
Sbjct: 236 S--LISNTWLLTAAHCFWKNKDPTQWIATFGATITPPAVKRNVRKIILHENYHRETNEND 293
Query: 111 NRLVNL 116
LV L
Sbjct: 294 IALVQL 299
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,833,152
Number of Sequences: 37866
Number of extensions: 354173
Number of successful extensions: 734
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 25
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.