Guide to the Human Genome
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Search of human proteins with 116875840

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens]
         (310 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens]               614   e-176
gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens]               614   e-176
gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo ...    39   0.006
gi|33286444 mastermind-like 2 [Homo sapiens]                           39   0.008
gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo sa...    39   0.008
gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens]              38   0.010
gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens]              38   0.010
gi|150417971 supervillin isoform 1 [Homo sapiens]                      38   0.010
gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo sap...    38   0.010
gi|4503381 down-regulator of transcription 1 [Homo sapiens]            38   0.013
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788730 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788720 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193794832 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788534 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788532 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193794830 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788530 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788528 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193794828 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017
gi|193788526 calcium channel, voltage-dependent, L type, alpha 1...    37   0.017

>gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens]
          Length = 310

 Score =  614 bits (1584), Expect = e-176
 Identities = 310/310 (100%), Positives = 310/310 (100%)

Query: 1   MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
           MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL
Sbjct: 1   MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60

Query: 61  AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120
           AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ
Sbjct: 61  AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120

Query: 121 AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR
Sbjct: 121 AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180

Query: 181 SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF 240
           SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF
Sbjct: 181 SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF 240

Query: 241 GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV 300
           GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV
Sbjct: 241 GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV 300

Query: 301 YTSLQWASLQ 310
           YTSLQWASLQ
Sbjct: 301 YTSLQWASLQ 310


>gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens]
          Length = 310

 Score =  614 bits (1584), Expect = e-176
 Identities = 310/310 (100%), Positives = 310/310 (100%)

Query: 1   MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60
           MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL
Sbjct: 1   MLVVEVANGRSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLL 60

Query: 61  AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120
           AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ
Sbjct: 61  AEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQ 120

Query: 121 AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR
Sbjct: 121 AAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180

Query: 181 SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF 240
           SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF
Sbjct: 181 SALLVQLATARPRPVKARPLDWRVQSKDWPHAGRPAHELRYSIYRDLWERGFFLSAAGKF 240

Query: 241 GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV 300
           GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV
Sbjct: 241 GGDFLVYPGDPLRFHAHYIAQCWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVV 300

Query: 301 YTSLQWASLQ 310
           YTSLQWASLQ
Sbjct: 301 YTSLQWASLQ 310


>gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo
           sapiens]
          Length = 142

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 30  GRTVGALPRGPRQNSRLGLPLLLMPEEARL-LAEIGAVTLVSAPRPDSRHHSLALTSFKR 88
           G + G       +N R+ L     P   R  LA +   T      P +  HS+A TS ++
Sbjct: 5   GHSRGFSSASSPENDRILLSTFPYPHSKRENLAGLTNSTSSVKEEPPTLRHSMAGTSARK 64

Query: 89  QQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKED 148
            Q    +E+     + RE +R+E  EK  EG+  +K++ ++       +E    +  +E+
Sbjct: 65  SQR---REEKRREEKRREEKRRE--EKRREGKRREKEEEKEEEEEEEEEEEEEEEEEEEE 119

Query: 149 ETSDGQASGEQE 160
           E S   A+ E+E
Sbjct: 120 EVSFSLATRERE 131



 Score = 31.6 bits (70), Expect = 0.94
 Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 54  PEEARLLAEIGAVTLVSAPRPDSRHHSLA----LTSFKRQQEESFQEQSALAAEARETRR 109
           PE  R+L       L + P P S+  +LA     TS  +++  + +   A    AR+++R
Sbjct: 16  PENDRIL-------LSTFPYPHSKRENLAGLTNSTSSVKEEPPTLRHSMA-GTSARKSQR 67

Query: 110 QELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEE 161
           +E   +  + +  K+++ ++  G    +E    +  +E+E  + +   E+EE
Sbjct: 68  REEKRREEKRREEKRREEKRREGKRREKEEEKEEEEEEEEEEEEEEEEEEEE 119


>gi|33286444 mastermind-like 2 [Homo sapiens]
          Length = 1156

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 74  PDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGA 133
           P     SL   + ++QQ++  Q+Q     + ++ ++Q+  ++  +  +   Q+ +Q   +
Sbjct: 576 PSQNKPSLLHYTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSS 635

Query: 134 SSSQEAGSSQAAKEDETSDGQASGEQEEAGPSSSQAGPSNGVAPLPRSALLVQ 186
            S+Q+    Q  ++ +    Q   +Q++  P SSQ   S    PL RS L +Q
Sbjct: 636 ISAQQQQQQQQQQQQQQQQQQQQQQQQQQQP-SSQPAQSLPSQPLLRSPLPLQ 687


>gi|13375901 PRKR interacting protein 1 (IL11 inducible) [Homo
           sapiens]
          Length = 184

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 11/84 (13%)

Query: 87  KRQQEESFQ---EQSALAAEARETRRQELLEKITEGQA-AKKQKLEQASGASSSQEAGSS 142
           K++ +  FQ   E++ +AAE +  +R++  +K+ E +  AKK KLEQ       ++ G  
Sbjct: 102 KQKLDAEFQKRLEKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQ------KKQEGPG 155

Query: 143 QAAKEDETSDGQASG-EQEEAGPS 165
           Q  ++  +S  +ASG E+EE  PS
Sbjct: 156 QPKEQGSSSSAEASGTEEEEEVPS 179


>gi|46255064 synaptotagmin-like 2 isoform d [Homo sapiens]
          Length = 1256

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 3/140 (2%)

Query: 44  SRLGLPLLLMPEEARLLAEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAE 103
           SR G+ +   P+   +  EIG +  V+ P  D    S         QE  F E S   + 
Sbjct: 688 SRSGVEIPRTPQ-LYVAHEIGTIKTVTPPE-DRDSESGVAGGQGTLQEPGFGEASEAISV 745

Query: 104 ARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEE-A 162
           +R  +   LL          K +L  AS     ++    +   E + SDG  S   E   
Sbjct: 746 SRNRQPIPLLMNKENSTKTSKVELTLASPYMKQEKEEEKEGFSESDFSDGNTSSNAESWR 805

Query: 163 GPSSSQAGPSNGVAPLPRSA 182
            PSSS+  PS  +  L RSA
Sbjct: 806 NPSSSEEEPSPVLKTLERSA 825


>gi|46255062 synaptotagmin-like 2 isoform c [Homo sapiens]
          Length = 1272

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 3/140 (2%)

Query: 44  SRLGLPLLLMPEEARLLAEIGAVTLVSAPRPDSRHHSLALTSFKRQQEESFQEQSALAAE 103
           SR G+ +   P+   +  EIG +  V+ P  D    S         QE  F E S   + 
Sbjct: 688 SRSGVEIPRTPQ-LYVAHEIGTIKTVTPPE-DRDSESGVAGGQGTLQEPGFGEASEAISV 745

Query: 104 ARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQASGEQEE-A 162
           +R  +   LL          K +L  AS     ++    +   E + SDG  S   E   
Sbjct: 746 SRNRQPIPLLMNKENSTKTSKVELTLASPYMKQEKEEEKEGFSESDFSDGNTSSNAESWR 805

Query: 163 GPSSSQAGPSNGVAPLPRSA 182
            PSSS+  PS  +  L RSA
Sbjct: 806 NPSSSEEEPSPVLKTLERSA 825


>gi|150417971 supervillin isoform 1 [Homo sapiens]
          Length = 1788

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 88  RQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKE 147
           R+ E+SF EQ+     +R T  ++ L ++ +    +    E+   A++ Q +   +A  +
Sbjct: 308 REMEKSFDEQNVPKRRSRNTAVEQRLRRLQDRSLTQPITTEEVVIAATLQASAHQKALAK 367

Query: 148 DETSDGQASGEQEEAGPSS 166
           D+T++G+   EQ E   S+
Sbjct: 368 DQTNEGKELAEQGEPDSST 386


>gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo
           sapiens]
          Length = 1101

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 22/149 (14%)

Query: 73  RPDSRHHSLALTSFKRQQEESFQEQSALAAEARETRRQE---LLEKITEGQAAK---KQK 126
           R +      A     R  E+  QE      +    ++QE   + E   +GQ  K   + +
Sbjct: 752 REEDEQREEAQVEAGRDLEQGAQEDQVAEEKWEVVQKQEAEGVREDEDKGQREKGYHEAR 811

Query: 127 LEQASGASS-----SQEAGSSQAAKEDETSDGQASGEQEEAG--PSSSQAGPSNGVAPL- 178
            +Q  G  S     + E G+ + +KE E+ DG+A G+Q   G           +GVA L 
Sbjct: 812 KDQGDGEDSRSPEAATEGGAGEVSKERESGDGEAEGDQRAGGYYLEEDTLSEGSGVASLE 871

Query: 179 --------PRSALLVQLATARPRPVKARP 199
                   P S+ + ++A   P+P +  P
Sbjct: 872 VDCAKEGNPHSSEMEEVAPQPPQPEEMEP 900


>gi|4503381 down-regulator of transcription 1 [Homo sapiens]
          Length = 176

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 23/73 (31%), Positives = 41/73 (56%)

Query: 77  RHHSLALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSS 136
           R  S  L +    +EE  ++Q  L A+AR+ + +   ++  + Q A +Q    A+ AS+S
Sbjct: 102 RKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQAQLAAASASAS 161

Query: 137 QEAGSSQAAKEDE 149
            +AGSSQ  ++D+
Sbjct: 162 NQAGSSQDEEDDD 174


>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 5 [Homo sapiens]
          Length = 2166

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788730 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 4 [Homo sapiens]
          Length = 2173

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 3 [Homo sapiens]
          Length = 2179

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 2 [Homo sapiens]
          Length = 2186

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788720 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 1 [Homo sapiens]
          Length = 2221

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 18 [Homo sapiens]
          Length = 2138

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 20 [Homo sapiens]
          Length = 2127

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 19 [Homo sapiens]
          Length = 2135

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 758 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 815

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 816 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 857


>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 17 [Homo sapiens]
          Length = 2138

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 16 [Homo sapiens]
          Length = 2138

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 15 [Homo sapiens]
          Length = 2138

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 14 [Homo sapiens]
          Length = 2138

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193794832 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoforom 13 [Homo sapiens]
          Length = 2144

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788534 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 12 [Homo sapiens]
          Length = 2146

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788532 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 11 [Homo sapiens]
          Length = 2146

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193794830 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 10 [Homo sapiens]
          Length = 2155

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788530 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 9 [Homo sapiens]
          Length = 2157

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788528 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 8 [Homo sapiens]
          Length = 2157

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193794828 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 7 [Homo sapiens]
          Length = 2157

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


>gi|193788526 calcium channel, voltage-dependent, L type, alpha 1C
           subunit isoform 6 [Homo sapiens]
          Length = 2158

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 82  ALTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGS 141
           +LTS ++++EE  +E+  LA  A   ++QEL+EK   G+ +K++K+E  S  +  +   +
Sbjct: 761 SLTSAQKEEEEE-KERKKLARTASPEKKQELVEKPAVGE-SKEEKIELKSITADGESPPA 818

Query: 142 SQAAKED----ETSDGQASGEQEEAGPSSSQAGPSNGVAPLPR 180
           ++   +D    E  D       E  G    +  P   V P PR
Sbjct: 819 TKINMDDLQPNENEDKSPYPNPETTGEEDEEE-PEMPVGPRPR 860


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,398,124
Number of Sequences: 37866
Number of extensions: 610609
Number of successful extensions: 5235
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 338
Number of HSP's that attempted gapping in prelim test: 4014
Number of HSP's gapped (non-prelim): 1262
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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