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Search of human proteins with 239746718
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746718 PREDICTED: hypothetical protein XP_002343801 [Homo
sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752195 PREDICTED: hypothetical protein XP_002348131 [Homo ... 201 1e-52
gi|239746718 PREDICTED: hypothetical protein XP_002343801 [Homo ... 201 1e-52
gi|239757710 PREDICTED: hypothetical protein [Homo sapiens] 199 5e-52
gi|146231952 COBW domain containing 6 [Homo sapiens] 30 0.41
gi|148727351 COBW domain containing 3 [Homo sapiens] 30 0.41
gi|119120938 COBW domain containing 5 [Homo sapiens] 30 0.41
gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens] 29 0.92
gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens] 29 0.92
gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens] 29 0.92
gi|33469141 COBW domain-containing protein 2 [Homo sapiens] 28 1.2
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 28 2.0
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 27 2.7
gi|19718780 semaphorin 6B precursor [Homo sapiens] 27 2.7
gi|28269693 xylosyltransferase I [Homo sapiens] 26 6.0
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens] 26 7.8
>gi|239752195 PREDICTED: hypothetical protein XP_002348131 [Homo
sapiens]
Length = 99
Score = 201 bits (510), Expect = 1e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MATRDQTPLSLEPGAQMGGGGSGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPG 60
MATRDQTPLSLEPGAQMGGGGSGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPG
Sbjct: 1 MATRDQTPLSLEPGAQMGGGGSGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPG 60
Query: 61 MLALQNLDDAFRDELQGGYFTGILCLVACDCARGLISAS 99
MLALQNLDDAFRDELQGGYFTGILCLVACDCARGLISAS
Sbjct: 61 MLALQNLDDAFRDELQGGYFTGILCLVACDCARGLISAS 99
>gi|239746718 PREDICTED: hypothetical protein XP_002343801 [Homo
sapiens]
Length = 99
Score = 201 bits (510), Expect = 1e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MATRDQTPLSLEPGAQMGGGGSGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPG 60
MATRDQTPLSLEPGAQMGGGGSGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPG
Sbjct: 1 MATRDQTPLSLEPGAQMGGGGSGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPG 60
Query: 61 MLALQNLDDAFRDELQGGYFTGILCLVACDCARGLISAS 99
MLALQNLDDAFRDELQGGYFTGILCLVACDCARGLISAS
Sbjct: 61 MLALQNLDDAFRDELQGGYFTGILCLVACDCARGLISAS 99
>gi|239757710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 99
Score = 199 bits (505), Expect = 5e-52
Identities = 98/99 (98%), Positives = 98/99 (98%)
Query: 1 MATRDQTPLSLEPGAQMGGGGSGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPG 60
MATRDQTPLSLEPGA MGGGGSGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPG
Sbjct: 1 MATRDQTPLSLEPGAHMGGGGSGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPG 60
Query: 61 MLALQNLDDAFRDELQGGYFTGILCLVACDCARGLISAS 99
MLALQNLDDAFRDELQGGYFTGILCLVACDCARGLISAS
Sbjct: 61 MLALQNLDDAFRDELQGGYFTGILCLVACDCARGLISAS 99
>gi|146231952 COBW domain containing 6 [Homo sapiens]
Length = 395
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 22 SGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPGMLALQNL 67
SG G ALE L V G L E+ L +G L S K G+ A++NL
Sbjct: 78 SGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENL 123
>gi|148727351 COBW domain containing 3 [Homo sapiens]
Length = 395
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 22 SGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPGMLALQNL 67
SG G ALE L V G L E+ L +G L S K G+ A++NL
Sbjct: 78 SGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENL 123
>gi|119120938 COBW domain containing 5 [Homo sapiens]
Length = 347
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 22 SGRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPGMLALQNL 67
SG G ALE L V G L E+ L +G L S K G+ A++NL
Sbjct: 78 SGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENL 123
>gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens]
Length = 376
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 23 GRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPGMLALQNL 67
G G ALE L V G L E+ L +G L S K G+ A++NL
Sbjct: 79 GEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENL 123
>gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens]
Length = 359
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 23 GRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPGMLALQNL 67
G G ALE L V G L E+ L +G L S K G+ A++NL
Sbjct: 43 GEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENL 87
>gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens]
Length = 395
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 23 GRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPGMLALQNL 67
G G ALE L V G L E+ L +G L S K G+ A++NL
Sbjct: 79 GEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENL 123
>gi|33469141 COBW domain-containing protein 2 [Homo sapiens]
Length = 395
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 23 GRGLALEAQLLVVGGHVLPEQLQGLVHGPLGISTKVPGMLALQNL 67
G G ALE L V G L E+ L +G L S K G+ A++NL
Sbjct: 79 GEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENL 123
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 6 QTPLSLEPGAQMGGGGSGRGLALEAQLLVVGGHVLP 41
QTP S+ PGA G G G A + V G++LP
Sbjct: 1086 QTPPSMMPGAVPGSGHPGVAAQSPAIVAAVQGNLLP 1121
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 12 EPGAQMGGGGSGRGL--ALEAQLLVVGGHVLPEQLQGLVHGPLG 53
E A+M GS RGL A +A L G +LP + GL GP G
Sbjct: 941 EHRAEMEEKGSKRGLEAAGKAGLATAGPGLLPRKPPGLAAGPAG 984
>gi|19718780 semaphorin 6B precursor [Homo sapiens]
Length = 888
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 13 PGAQMGGGGSGRGLALEAQL--LVVGGHVLPEQLQGLVH 49
PG + GGGG G G+ EA L L+ G LQG H
Sbjct: 662 PGGRGGGGGGGAGVPPEALLAPLMQNGWAKATLLQGGPH 700
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 4 RDQTPLSLEPGAQMGGGGSGRG 25
R++ L EP A GGGG G G
Sbjct: 65 RERRDLPAEPAAARGGGGGGGG 86
>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
Length = 753
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 8 PLSLEPGAQMGGGGSGRGLALEAQLLV 34
PL PGA +G S R L+L LLV
Sbjct: 76 PLCASPGAAVGASRSRRSLSLNRLLLV 102
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.141 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,211,724
Number of Sequences: 37866
Number of extensions: 185681
Number of successful extensions: 613
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 16
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.