Search of human proteins with 239745610

Search of human proteins with 239745610

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745610 PREDICTED: hypothetical protein XP_002344141 [Homo
sapiens]
         (121 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756633 PREDICTED: hypothetical protein [Homo sapiens]           258   7e-70
gi|239751119 PREDICTED: hypothetical protein XP_002347717 [Homo ...   258   7e-70
gi|239745610 PREDICTED: hypothetical protein XP_002344141 [Homo ...   258   7e-70
gi|119395716 forkhead box C1 [Homo sapiens]                            38   0.002
gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens]    36   0.008
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]        30   0.33 
gi|190341107 N-acetyltransferase 12 [Homo sapiens]                     30   0.33 
gi|110349786 Alstrom syndrome 1 [Homo sapiens]                         30   0.43 
gi|23943900 transmembrane channel-like 8 [Homo sapiens]                30   0.57 
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ...    29   0.74 
gi|49574508 N-Acetylglucosamine kinase [Homo sapiens]                  29   0.74 
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]          29   0.74 
gi|169211572 PREDICTED: similar to hCG1816473 [Homo sapiens]           29   0.97 
gi|169212006 PREDICTED: similar to hCG1816473 [Homo sapiens]           29   0.97 
gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo ...    29   0.97 
gi|169211191 PREDICTED: similar to hCG1816473 [Homo sapiens]           29   0.97 
gi|61743978 stabilin 1 precursor [Homo sapiens]                        29   0.97 
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     29   0.97 
gi|13491174 MARCKS-like 1 [Homo sapiens]                               29   0.97 
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre...    29   0.97 
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ...    29   0.97 
gi|126352608 elastin isoform e precursor [Homo sapiens]                28   1.3  
gi|126352446 elastin isoform d precursor [Homo sapiens]                28   1.3  
gi|126352322 elastin isoform c precursor [Homo sapiens]                28   1.3  
gi|126352700 elastin isoform b precursor [Homo sapiens]                28   1.3  
gi|126352440 elastin isoform a precursor [Homo sapiens]                28   1.3  
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]             28   1.3  
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor...    28   1.3  
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor...    28   1.3  
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor...    28   1.3  

>gi|239756633 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 121

 Score =  258 bits (659), Expect = 7e-70
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MIWKSVQKGCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLF 60
           MIWKSVQKGCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLF
Sbjct: 1   MIWKSVQKGCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLF 60

Query: 61  TSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIPT 120
           TSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIPT
Sbjct: 61  TSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIPT 120

Query: 121 F 121
           F
Sbjct: 121 F 121


>gi|239751119 PREDICTED: hypothetical protein XP_002347717 [Homo
           sapiens]
          Length = 121

 Score =  258 bits (659), Expect = 7e-70
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MIWKSVQKGCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLF 60
           MIWKSVQKGCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLF
Sbjct: 1   MIWKSVQKGCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLF 60

Query: 61  TSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIPT 120
           TSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIPT
Sbjct: 61  TSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIPT 120

Query: 121 F 121
           F
Sbjct: 121 F 121


>gi|239745610 PREDICTED: hypothetical protein XP_002344141 [Homo
           sapiens]
          Length = 121

 Score =  258 bits (659), Expect = 7e-70
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MIWKSVQKGCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLF 60
           MIWKSVQKGCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLF
Sbjct: 1   MIWKSVQKGCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLF 60

Query: 61  TSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIPT 120
           TSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIPT
Sbjct: 61  TSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIPT 120

Query: 121 F 121
           F
Sbjct: 121 F 121


>gi|119395716 forkhead box C1 [Homo sapiens]
          Length = 553

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 30  PGAGAL--CPCVDQESASKP------AGQSAGCSGQDLFTSNHESMQLGGGGRKGNHVTC 81
           PG  +L   PC    SA         AG + G  G   +  N ++M L   G +G H+  
Sbjct: 355 PGQSSLYSSPCSQTSSAGSSGGGGGGAGAAGGAGGAGTYHCNLQAMSLYAAGERGGHLQG 414

Query: 82  CPGCFEGALSEGQIPEQELP 101
            PG   G+  +  +P+  LP
Sbjct: 415 APGGAGGSAVDDPLPDYSLP 434


>gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens]
          Length = 1585

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 80   TCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSP 116
            TC P    G LS   + E E PKS L GP+G+   SP
Sbjct: 1261 TCNPSTITGTLSRLSLDEDEEPKSCLVGPEGSLSFSP 1297


>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
          Length = 577

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 5   SVQKGCPVPAGVPSSALPQGPVSLLPGAG 33
           S+Q G P P  +P++    GP SL PG G
Sbjct: 249 SMQGGVPAPGQMPAAVTGPGPGSLAPGGG 277


>gi|190341107 N-acetyltransferase 12 [Homo sapiens]
          Length = 362

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 21 LPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLFTSNHESMQLGGGGR 74
          +P GP SLLP      P   +     PAG +  C  +D      +    GGG R
Sbjct: 4  VPPGPSSLLPPPAPPAPAAVEPRCPFPAGAALACCSED---EEDDEEHEGGGSR 54


>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
          Length = 4169

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 86   FEGALSEGQIPEQELPKSLLKGPQGNTVMSPDI 118
            ++ A  EG +PE+ L  S+  GP G T  +P I
Sbjct: 1487 YKQAFPEGHLPEESLKVSVAPGPVGQTTGAPTI 1519


>gi|23943900 transmembrane channel-like 8 [Homo sapiens]
          Length = 726

 Score = 29.6 bits (65), Expect = 0.57
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 9   GCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDL 59
           GCP P G P    P+   S++  AG   PC  Q  A   A +    SG +L
Sbjct: 677 GCPCP-GSPGHQAPRPGPSVVDAAGLRSPCPGQHGAPASARRFRFPSGAEL 726


>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
           sapiens]
          Length = 725

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 11  PVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLFTSNHESMQLG 70
           P P  + ++A+  GP  ++P + A  P      +S   G+  G +G   FT     MQ  
Sbjct: 656 PGPPALSNTAVQTGPAGVVPHSLATAP------SSSSMGEGPGAAG-GRFTQAARGMQRA 708

Query: 71  G-GGRKG 76
           G GGR G
Sbjct: 709 GPGGRDG 715


>gi|49574508 N-Acetylglucosamine kinase [Homo sapiens]
          Length = 344

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 14  AGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSG 56
           AG  ++A P G V L+ G G+ C  ++      P G  +GC G
Sbjct: 109 AGSIATATPDGGVVLISGTGSNCRLIN------PDGSESGCGG 145


>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
          Length = 796

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 63  NHESMQLGGGGRKGNH---VTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSPDIP 119
           N  S       R+G H   VT  P    G   +  +P   LP++LL GP    V+ P  P
Sbjct: 217 NSSSAAASVASRRGTHGGLVTGLPNPGGGGGPQLTVPPNLLPQTLLNGPASAAVLPPPPP 276


>gi|169211572 PREDICTED: similar to hCG1816473 [Homo sapiens]
          Length = 256

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 2   IWKSVQKGCPVPAGVPSS--ALPQGPVSLLPGAGALCPCVDQESASKPA 48
           +W      C +PA  PSS  ALPQ P   LP      P + +++ + PA
Sbjct: 139 LWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAFASPA 187


>gi|169212006 PREDICTED: similar to hCG1816473 [Homo sapiens]
          Length = 256

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 2   IWKSVQKGCPVPAGVPSS--ALPQGPVSLLPGAGALCPCVDQESASKPA 48
           +W      C +PA  PSS  ALPQ P   LP      P + +++ + PA
Sbjct: 139 LWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAFASPA 187


>gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo
           sapiens]
          Length = 396

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 7   QKGCPVPAGVPSSALPQGPVSLLPGAGAL 35
           ++GCP PAG P   L +  +++ PG G L
Sbjct: 285 RRGCPGPAGGPGPGLTRRTLAVGPGLGLL 313


>gi|169211191 PREDICTED: similar to hCG1816473 [Homo sapiens]
          Length = 256

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 2   IWKSVQKGCPVPAGVPSS--ALPQGPVSLLPGAGALCPCVDQESASKPA 48
           +W      C +PA  PSS  ALPQ P   LP      P + +++ + PA
Sbjct: 139 LWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAFTSPA 187


>gi|61743978 stabilin 1 precursor [Homo sapiens]
          Length = 2570

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 13/85 (15%)

Query: 22   PQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLFTSNHESMQLGGGGRKGNHVTC 81
            PQ P    P A     CV   + +     +AG SG  +F S  +    G GG    H  C
Sbjct: 1418 PQCPRKCDPNAN----CVQDSAGASTCACAAGYSGNGIFCSEVDPCAHGHGG-CSPHANC 1472

Query: 82   ---CPG-----CFEGALSEGQIPEQ 98
                PG     C +G + +G++ ++
Sbjct: 1473 TKVAPGQRTCTCQDGYMGDGELCQE 1497


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 9   GCPVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSG 56
           G P PAG P +A P GP    PG G         +A+  A  +A   G
Sbjct: 216 GGPSPAGAPGAAGPGGPGG-EPGKGGAAAAAAAAAAAAAAAAAAAAGG 262


>gi|13491174 MARCKS-like 1 [Homo sapiens]
          Length = 195

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 15  GVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGC--SGQDLFTSNH-ESMQLGG 71
           G  SS  P+G V+    AGA        S +K  GQ  G   S  DL      ES  + G
Sbjct: 2   GSQSSKAPRGDVTAEEAAGA--------SPAKANGQENGHVKSNGDLSPKGEGESPPVNG 53

Query: 72  ----GGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLK 106
                G  G+ +   P   +GA ++G++P +E PK   K
Sbjct: 54  TDEAAGATGDAIEPAPPS-QGAEAKGEVPPKETPKKKKK 91


>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
           preproprotein [Homo sapiens]
          Length = 178

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 26/106 (24%), Positives = 35/106 (33%)

Query: 11  PVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSGQDLFTSNHESMQLG 70
           P P G P    PQG  S  P +    P        KP G  A    +     +      G
Sbjct: 71  PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQG 130

Query: 71  GGGRKGNHVTCCPGCFEGALSEGQIPEQELPKSLLKGPQGNTVMSP 116
              ++GN+    P    G   + Q P    P+   + PQG     P
Sbjct: 131 PPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRP 176


>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
           64kDa, tau variant [Homo sapiens]
          Length = 616

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 6   VQKGCPVPAGVPSSALPQGPVSLLPGAGALCP 37
           +Q G P P  +P++    GP SL PG GA+ P
Sbjct: 258 IQGGIPAPGPIPAAVPGAGPGSLTPG-GAMQP 288


>gi|126352608 elastin isoform e precursor [Homo sapiens]
          Length = 705

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 14  AGVPSSALPQGPVSLLPGAG----ALCPCVDQESASKPAGQSA 52
           AGVP   +P   + ++PGAG    A+   V  E+A+K A ++A
Sbjct: 339 AGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAA 381


>gi|126352446 elastin isoform d precursor [Homo sapiens]
          Length = 711

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 14  AGVPSSALPQGPVSLLPGAG----ALCPCVDQESASKPAGQSA 52
           AGVP   +P   + ++PGAG    A+   V  E+A+K A ++A
Sbjct: 344 AGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAA 386


>gi|126352322 elastin isoform c precursor [Homo sapiens]
          Length = 692

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 14  AGVPSSALPQGPVSLLPGAG----ALCPCVDQESASKPAGQSA 52
           AGVP   +P   + ++PGAG    A+   V  E+A+K A ++A
Sbjct: 344 AGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAA 386


>gi|126352700 elastin isoform b precursor [Homo sapiens]
          Length = 677

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 14  AGVPSSALPQGPVSLLPGAG----ALCPCVDQESASKPAGQSA 52
           AGVP   +P   + ++PGAG    A+   V  E+A+K A ++A
Sbjct: 329 AGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAA 371


>gi|126352440 elastin isoform a precursor [Homo sapiens]
          Length = 724

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 14  AGVPSSALPQGPVSLLPGAG----ALCPCVDQESASKPAGQSA 52
           AGVP   +P   + ++PGAG    A+   V  E+A+K A ++A
Sbjct: 339 AGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAA 381


>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
          Length = 4391

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 35   LCPCVDQESASKPAGQSAGCSGQDLFTSNHESMQLGGGGRKGNHVTCCPGCFEGALSEGQ 94
            LCPC    +A    GQ+A     D  T  H +      G  G H   C   + G  S+GQ
Sbjct: 1208 LCPCYGDPAA----GQAAHTCFLD--TDGHPTCDACSPGHSGRHCERCAPGYYGNPSQGQ 1261

Query: 95   IPEQELPKSLLKGPQG 110
              +++   S + GP G
Sbjct: 1262 PCQRD---SQVPGPIG 1274


>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
           delta [Homo sapiens]
          Length = 831

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 11  PVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSG 56
           P PA  P    P GP +L P    L P  ++ S   P+G     SG
Sbjct: 571 PTPAPTPPRP-PPGPATLAPSRPLLVPKAERLSPPAPSGSERRLSG 615



 Score = 26.6 bits (57), Expect = 4.8
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 11  PVPAGVPSSALPQGPVSLLP---GAGALCPCVDQESASKPAGQSAG 53
           P P  VPS A    P+ LLP      A  PC        PA    G
Sbjct: 457 PTPQSVPSPAPTPFPIELLPLGYSEPAFGPCFSMPRGKPPAPSPRG 502


>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
           gamma [Homo sapiens]
          Length = 850

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 11  PVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSG 56
           P PA  P    P GP +L P    L P  ++ S   P+G     SG
Sbjct: 571 PTPAPTPPRP-PPGPATLAPSRPLLVPKAERLSPPAPSGSERRLSG 615



 Score = 26.6 bits (57), Expect = 4.8
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 11  PVPAGVPSSALPQGPVSLLP---GAGALCPCVDQESASKPAGQSAG 53
           P P  VPS A    P+ LLP      A  PC        PA    G
Sbjct: 457 PTPQSVPSPAPTPFPIELLPLGYSEPAFGPCFSMPRGKPPAPSPRG 502


>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
           beta [Homo sapiens]
          Length = 833

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 11  PVPAGVPSSALPQGPVSLLPGAGALCPCVDQESASKPAGQSAGCSG 56
           P PA  P    P GP +L P    L P  ++ S   P+G     SG
Sbjct: 571 PTPAPTPPRP-PPGPATLAPSRPLLVPKAERLSPPAPSGSERRLSG 615



 Score = 26.6 bits (57), Expect = 4.8
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 11  PVPAGVPSSALPQGPVSLLP---GAGALCPCVDQESASKPAGQSAG 53
           P P  VPS A    P+ LLP      A  PC        PA    G
Sbjct: 457 PTPQSVPSPAPTPFPIELLPLGYSEPAFGPCFSMPRGKPPAPSPRG 502


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,215,001
Number of Sequences: 37866
Number of extensions: 323940
Number of successful extensions: 1257
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 167
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.