Guide to the Human Genome
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Name: LOC100288257 Sequence: fasta or formatted (121aa) NCBI GI: 239745610
Description:

PREDICTED: hypothetical protein XP_002344141

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6          8           1
 C cysteine            5.8          7           2
 D aspartate           2.5          3           1
 E glutamate           5.0          6           1
 F phenylalanine       2.5          3           1
 G glycine            14.9         18           4
 H histidine           1.7          2           1
 I isoleucine          2.5          3           1
 K lysine              5.0          6           1
 L leucine             8.3         10           2
 M methionine          2.5          3           1
 N asparagine          2.5          3           1
 P proline            11.6         14           1
 Q glutamine           7.4          9           1
 R arginine            0.8          1           1
 S serine             10.7         13           2
 T threonine           3.3          4           1
 V valine              5.8          7           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344141 
LOC100293273          1.000   PREDICTED: hypothetical protein 
LOC100290962          1.000   PREDICTED: hypothetical protein XP_002347717 
FOXC1                 0.056   forkhead box C1 
BAI2                  0.047   brain-specific angiogenesis inhibitor 2 
CSTF2                 0.021   cleavage stimulation factor subunit 2 
NAT12                 0.021   N-acetyltransferase 12 
ALMS1                 0.021   Alstrom syndrome 1 
TMC8                  0.021   transmembrane channel-like 8 
LOC100289661          0.017   PREDICTED: hypothetical protein XP_002343723 
NAGK                  0.017   N-Acetylglucosamine kinase 
C14orf4               0.017   chromosome 14 open reading frame 4 
LOC100130370          0.017   PREDICTED: similar to hCG1816473 
LOC100130370          0.017   PREDICTED: similar to hCG1816473 
LOC100288030          0.017   PREDICTED: hypothetical protein XP_002343812 
LOC100130370          0.017   PREDICTED: similar to hCG1816473 
STAB1                 0.017   stabilin 1 precursor 
PHOX2B                0.017   paired-like homeobox 2b 
MARCKSL1              0.017   MARCKS-like 1 
PRB1                  0.017   proline-rich protein BstNI subfamily 1 isoform 3 pre...
CSTF2T                0.017   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
ELN                   0.013   elastin isoform e precursor 
ELN                   0.013   elastin isoform d precursor 
ELN                   0.013   elastin isoform c precursor 
ELN                   0.013   elastin isoform b precursor 
ELN                   0.013   elastin isoform a precursor 
HSPG2                 0.013   heparan sulfate proteoglycan 2 
MLXIPL                0.013   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.013   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.013   Williams Beuren syndrome chromosome region 14 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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