Guide to the Human Genome
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Name: LOC100133862 Sequence: fasta or formatted (120aa) NCBI GI: 169217837
Description:

PREDICTED: similar to hCG1773549

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         13           3
 C cysteine            1.7          2           1
 D aspartate           3.3          4           1
 E glutamate           3.3          4           1
 F phenylalanine       4.2          5           1
 G glycine             9.2         11           2
 H histidine           0.0          0           0
 I isoleucine          4.2          5           2
 K lysine              5.0          6           2
 L leucine             4.2          5           1
 M methionine          2.5          3           1
 N asparagine          0.8          1           1
 P proline             2.5          3           1
 Q glutamine           6.7          8           1
 R arginine            4.2          5           1
 S serine             11.7         14           2
 T threonine           8.3         10           1
 V valine             10.0         12           2
 W tryptophan          3.3          4           1
 Y tyrosine            4.2          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1773549 
LOC100292483          0.798   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.798   PREDICTED: hypothetical protein XP_002347494 
LOC100292611          0.761   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290528          0.761   PREDICTED: hypothetical protein XP_002347495 
LOC100290415          0.725   PREDICTED: hypothetical protein XP_002347493 
LOC100130811          0.711   PREDICTED: similar to hCG2038921 
LOC100130811          0.711   PREDICTED: similar to hCG2038921 
LOC100291567          0.569   PREDICTED: similar to hCG2029980 
LOC100291160          0.569   PREDICTED: hypothetical protein XP_002347528 
LOC100290146          0.523   PREDICTED: hypothetical protein XP_002347524 
LOC100293270          0.500   PREDICTED: similar to hCG2042717 
LOC100290320          0.500   PREDICTED: hypothetical protein XP_002347525 
LOC652494             0.491   PREDICTED: similar to hCG2042717 
LOC100293211          0.486   PREDICTED: similar to hCG2042717 
LOC100291190          0.477   PREDICTED: hypothetical protein XP_002347529 
LOC100291056          0.477   PREDICTED: hypothetical protein XP_002347527 
LOC100289290          0.477   PREDICTED: hypothetical protein XP_002343511 
LOC100132941          0.472   PREDICTED: similar to Ig heavy chain 
LOC100290036          0.472   PREDICTED: hypothetical protein XP_002347522 
LOC100132941          0.468   PREDICTED: similar to Ig heavy chain 
LOC100290738          0.454   PREDICTED: hypothetical protein XP_002348171 
LOC100287372          0.454   PREDICTED: hypothetical protein XP_002343513 
LOC100292999          0.454   PREDICTED: hypothetical protein 
LOC401847             0.436   PREDICTED: similar to hCG1793095 
LOC100290115          0.427   PREDICTED: hypothetical protein XP_002347523 
LOC646057             0.422   PREDICTED: similar to hCG2003024 
LOC646057             0.422   PREDICTED: similar to hCG2003024 
LOC646057             0.417   PREDICTED: similar to hCG2003024 
LOC100292858          0.390   PREDICTED: similar to hCG2029977 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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