Guide to the Human Genome
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Name: LOC642131 Sequence: fasta or formatted (277aa) NCBI GI: 169208448
Description:

PREDICTED: similar to hCG1812074

Not currently referenced in the text

Other entries for this name:
alt prot {222aa} PREDICTED: similar to hCG1812074
alt prot {225aa} PREDICTED: similar to hCG1812074
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         20           2
 C cysteine            3.2          9           1
 D aspartate           3.2          9           1
 E glutamate           3.2          9           1
 F phenylalanine       2.2          6           2
 G glycine             8.7         24           2
 H histidine           3.6         10           1
 I isoleucine          2.9          8           1
 K lysine              3.6         10           1
 L leucine            13.0         36           3
 M methionine          1.8          5           1
 N asparagine          2.2          6           1
 P proline             6.9         19           2
 Q glutamine           5.1         14           2
 R arginine            6.1         17           1
 S serine             11.2         31           3
 T threonine           3.2          9           1
 V valine              7.9         22           2
 W tryptophan          2.2          6           2
 Y tyrosine            2.5          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1812074 
LOC100134397          0.741   PREDICTED: similar to hCG1812074 
LOC642131             0.741   PREDICTED: similar to hCG1812074 
LOC642131             0.623   PREDICTED: similar to hCG1812074 
LOC100292858          0.436   PREDICTED: similar to hCG2029977 
LOC100289944          0.425   PREDICTED: hypothetical protein XP_002347520 
LOC100291190          0.224   PREDICTED: hypothetical protein XP_002347529 
LOC100293211          0.222   PREDICTED: similar to hCG2042717 
LOC100293270          0.219   PREDICTED: similar to hCG2042717 
LOC100290320          0.219   PREDICTED: hypothetical protein XP_002347525 
LOC652494             0.211   PREDICTED: similar to hCG2042717 
LOC100289290          0.193   PREDICTED: hypothetical protein XP_002343511 
LOC646057             0.191   PREDICTED: similar to hCG2003024 
LOC100290115          0.189   PREDICTED: hypothetical protein XP_002347523 
LOC401847             0.188   PREDICTED: similar to hCG1793095 
LOC646057             0.188   PREDICTED: similar to hCG2003024 
LOC100290006          0.184   PREDICTED: hypothetical protein XP_002347521 
LOC100290036          0.167   PREDICTED: hypothetical protein XP_002347522 
LOC100290738          0.162   PREDICTED: hypothetical protein XP_002348171 
LOC100287372          0.162   PREDICTED: hypothetical protein XP_002343513 
LOC100132941          0.153   PREDICTED: similar to Ig heavy chain 
LOC100133862          0.151   PREDICTED: similar to hCG1773549 
LOC100132941          0.142   PREDICTED: similar to Ig heavy chain 
LOC646057             0.140   PREDICTED: similar to hCG2003024 
LOC100292999          0.138   PREDICTED: hypothetical protein 
LOC100291056          0.138   PREDICTED: hypothetical protein XP_002347527 
LOC100290146          0.136   PREDICTED: hypothetical protein XP_002347524 
LOC100292483          0.136   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.136   PREDICTED: hypothetical protein XP_002347494 
LOC100130811          0.123   PREDICTED: similar to hCG2038921 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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