Guide to the Human Genome
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Search of human proteins with 239744909

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744909 PREDICTED: hypothetical protein XP_002343293
isoform 1 [Homo sapiens]
         (127 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756073 PREDICTED: hypothetical protein isoform 1 [Homo sap...   266   2e-72
gi|239756071 PREDICTED: hypothetical protein isoform 2 [Homo sap...   266   2e-72
gi|239750602 PREDICTED: hypothetical protein XP_002347477 isofor...   266   2e-72
gi|239750600 PREDICTED: hypothetical protein XP_002347478 isofor...   266   2e-72
gi|239744909 PREDICTED: hypothetical protein XP_002343293 isofor...   266   2e-72
gi|239744907 PREDICTED: hypothetical protein XP_002343294 isofor...   266   2e-72
gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo sap...    30   0.65 
gi|239749213 PREDICTED: mucin 3B, cell surface associated, parti...    30   0.65 
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]            30   0.65 
gi|169170721 PREDICTED: similar to intestinal mucin [Homo sapiens]     30   0.65 
gi|239754456 PREDICTED: hypothetical protein [Homo sapiens]            28   1.5  
gi|169169843 PREDICTED: hypothetical protein [Homo sapiens]            28   1.9  
gi|169168890 PREDICTED: hypothetical protein LOC441172 [Homo sap...    28   1.9  
gi|169169339 PREDICTED: hypothetical protein LOC441172 [Homo sap...    28   1.9  
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo...    27   3.2  
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       27   5.5  
gi|52627207 olfactory receptor, family 4, subfamily C, member 12...    26   7.2  
gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]    26   7.2  
gi|239746595 PREDICTED: hypothetical protein XP_002343793 [Homo ...    26   9.4  
gi|4557567 epiregulin preproprotein [Homo sapiens]                     26   9.4  
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ...    26   9.4  
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]              26   9.4  
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ...    26   9.4  

>gi|239756073 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 127

 Score =  266 bits (681), Expect = 2e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
           MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60

Query: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
           CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120

Query: 121 AAAGGTV 127
           AAAGGTV
Sbjct: 121 AAAGGTV 127


>gi|239756071 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 127

 Score =  266 bits (681), Expect = 2e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
           MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60

Query: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
           CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120

Query: 121 AAAGGTV 127
           AAAGGTV
Sbjct: 121 AAAGGTV 127


>gi|239750602 PREDICTED: hypothetical protein XP_002347477 isoform 1
           [Homo sapiens]
          Length = 127

 Score =  266 bits (681), Expect = 2e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
           MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60

Query: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
           CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120

Query: 121 AAAGGTV 127
           AAAGGTV
Sbjct: 121 AAAGGTV 127


>gi|239750600 PREDICTED: hypothetical protein XP_002347478 isoform 2
           [Homo sapiens]
          Length = 127

 Score =  266 bits (681), Expect = 2e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
           MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60

Query: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
           CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120

Query: 121 AAAGGTV 127
           AAAGGTV
Sbjct: 121 AAAGGTV 127


>gi|239744909 PREDICTED: hypothetical protein XP_002343293 isoform 1
           [Homo sapiens]
          Length = 127

 Score =  266 bits (681), Expect = 2e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
           MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60

Query: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
           CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120

Query: 121 AAAGGTV 127
           AAAGGTV
Sbjct: 121 AAAGGTV 127


>gi|239744907 PREDICTED: hypothetical protein XP_002343294 isoform 2
           [Homo sapiens]
          Length = 127

 Score =  266 bits (681), Expect = 2e-72
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60
           MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV
Sbjct: 1   MRLREVGYLAALTLGRVLHRSIKVDWHIWAPFTGHNDVSLLRAGPVCTVGVPGAVCQAAV 60

Query: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120
           CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG
Sbjct: 61  CDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVHKGVHWFAPPLCHIPAPHHLVTVGG 120

Query: 121 AAAGGTV 127
           AAAGGTV
Sbjct: 121 AAAGGTV 127


>gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo
           sapiens]
          Length = 245

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 37  DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
           + + LR    CT GV  A+      D H G  ++  + P         TD          
Sbjct: 91  EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPTCR---CYSTD---------- 131

Query: 97  KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
              HWF+ P C + A H    VGG  AG  +
Sbjct: 132 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 159


>gi|239749213 PREDICTED: mucin 3B, cell surface associated, partial
           [Homo sapiens]
          Length = 1063

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 37  DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
           + + LR    CT GV  A+      D H G  ++  + P         TD          
Sbjct: 909 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPACR---CYSTD---------- 949

Query: 97  KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
              HWF+ P C + A H    VGG  AG  +
Sbjct: 950 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 977


>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
          Length = 1486

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 37   DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
            + + LR    CT GV  A+      D H G  ++  + P         TD          
Sbjct: 1332 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPACR---CYSTD---------- 1372

Query: 97   KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
               HWF+ P C + A H    VGG  AG  +
Sbjct: 1373 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 1400


>gi|169170721 PREDICTED: similar to intestinal mucin [Homo sapiens]
          Length = 310

 Score = 29.6 bits (65), Expect = 0.65
 Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 37  DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
           + + LR    CT GV  A+      D H G  ++  + P         TD          
Sbjct: 156 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPACR---CYSTD---------- 196

Query: 97  KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
              HWF+ P C + A H    VGG  AG  +
Sbjct: 197 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 224


>gi|239754456 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 135

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 46 VCTVGVPGAVCQAAVCDVHAGVALVAVALPVLA 78
          VCT GV   VC A VC   AGV +   A P  A
Sbjct: 15 VCTAGV--CVCTAGVCVCTAGVCMCTDAQPTTA 45


>gi|169169843 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 213

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 83  LETDILDIYQGLVHKGVHW-------FAPPLCHIPAPHHLVTVGGAAAG 124
           L  ++ +   G   +G+ W       F PP CH P  H L    G  AG
Sbjct: 140 LALELAEDVPGAARQGLLWTEVRARSFVPPRCHPPTAHLLAGERGVEAG 188


>gi|169168890 PREDICTED: hypothetical protein LOC441172 [Homo
           sapiens]
          Length = 324

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 83  LETDILDIYQGLVHKGVHW-------FAPPLCHIPAPHHLVTVGGAAAG 124
           L  ++ +   G   +G+ W       F PP CH P  H L    G  AG
Sbjct: 140 LALELAEDVPGAARQGLLWTEVRARSFVPPRCHPPTAHLLAGKRGVEAG 188


>gi|169169339 PREDICTED: hypothetical protein LOC441172 [Homo
           sapiens]
          Length = 324

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 83  LETDILDIYQGLVHKGVHW-------FAPPLCHIPAPHHLVTVGGAAAG 124
           L  ++ +   G   +G+ W       F PP CH P  H L    G  AG
Sbjct: 140 LALELAEDVPGAARQGLLWTEVRARSFVPPRCHPPTAHLLAGKRGVEAG 188


>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
           sapiens]
          Length = 323

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)

Query: 100 HWFAPP----LCHIPAPHHLVTVGGAAA 123
           HW   P    +C +P PHH V+  GA +
Sbjct: 287 HWGGMPCPCSMCQVPPPHHHVSAMGAGS 314


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 26.6 bits (57), Expect = 5.5
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 15   GRVLHRSIKVDWHIWAPFTGHNDVSLLRA----GPVCTVGVPGAVCQAAVCDVHAGVALV 70
            G VLHR+   D+ + A  T  N   LLRA     P+   G PG    + V     G    
Sbjct: 1714 GPVLHRNNIADYALSAGTTAMNAQRLLRATKLKKPILLEGSPGVGKTSLV-----GALAK 1768

Query: 71   AVALPVLAGDLFLETDILDIY 91
            A    ++  +L  +TDI D++
Sbjct: 1769 ASGNTLVRINLSEQTDITDLF 1789


>gi|52627207 olfactory receptor, family 4, subfamily C, member 12
           [Homo sapiens]
          Length = 309

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 9   LAALTLGRVLHRSIKVDWHIWAPFTGHN 36
           +A   +G  LH +I++ + +W PF G N
Sbjct: 143 VAVAWVGGFLHATIQILFTVWLPFCGPN 170


>gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]
          Length = 1379

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 102 FAPPLCHIPAPHHLVTVGG 120
           +APP C +P PH     GG
Sbjct: 679 YAPPTCTMPLPHEEKAAGG 697


>gi|239746595 PREDICTED: hypothetical protein XP_002343793 [Homo
           sapiens]
          Length = 663

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 110 PAPHHLVTVGGAAAGGTV 127
           P+P HL++VG A + GT+
Sbjct: 91  PSPTHLISVGSAQSQGTI 108


>gi|4557567 epiregulin preproprotein [Homo sapiens]
          Length = 169

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 47  CTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIY 91
           C VG  G  C+     VH  ++   VAL V+   LFL T +   Y
Sbjct: 94  CEVGYTGVRCEHFFLTVHQPLSKEYVALTVILIILFLITVVGSTY 138


>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
            [Homo sapiens]
          Length = 2649

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 19   HRSIKVDWHIWA--PFTGHNDVSLLR 42
            H S++VDW+ WA  P   + DV L R
Sbjct: 1660 HYSLQVDWYTWATSPIRRYLDVVLQR 1685


>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
          Length = 739

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 38  VSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALP 75
           + LL AGP   V V  A   A V  +++GV + A+ LP
Sbjct: 494 LQLLAAGPGSPVKVAAAAGPANVHLINSGVGVTALQLP 531


>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
            [Homo sapiens]
          Length = 2080

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 19   HRSIKVDWHIWA--PFTGHNDVSLLR 42
            H S++VDW+ WA  P   + DV L R
Sbjct: 1091 HYSLQVDWYTWATSPIRRYLDVVLQR 1116


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.143    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,353,181
Number of Sequences: 37866
Number of extensions: 220438
Number of successful extensions: 560
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 24
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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