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Search of human proteins with 239744603
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744603 PREDICTED: hypothetical protein XP_002343238 [Homo
sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755792 PREDICTED: hypothetical protein [Homo sapiens] 530 e-151
gi|239750294 PREDICTED: hypothetical protein XP_002347346 [Homo ... 530 e-151
gi|239744603 PREDICTED: hypothetical protein XP_002343238 [Homo ... 530 e-151
gi|21389447 TBC1 domain family, member 20 [Homo sapiens] 34 0.14
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens] 32 0.71
gi|169160919 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|169162159 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|169161152 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 30 1.6
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 30 1.6
gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens] 30 2.1
gi|239754209 PREDICTED: hypothetical protein [Homo sapiens] 29 3.5
gi|239748740 PREDICTED: hypothetical protein [Homo sapiens] 29 3.5
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 28 6.0
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 28 6.0
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 28 6.0
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 28 6.0
gi|4885649 SUMO-1 activating enzyme subunit 2 [Homo sapiens] 28 6.0
gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens] 28 7.9
>gi|239755792 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 530 bits (1364), Expect = e-151
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MQVQYIEVMFTCLGGAVEVGFDHFVFQEGGLLPPELGRKKTPGDFLAHRHGRVPHQEARL 60
MQVQYIEVMFTCLGGAVEVGFDHFVFQEGGLLPPELGRKKTPGDFLAHRHGRVPHQEARL
Sbjct: 1 MQVQYIEVMFTCLGGAVEVGFDHFVFQEGGLLPPELGRKKTPGDFLAHRHGRVPHQEARL 60
Query: 61 GQHLAQALEQVLQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHA 120
GQHLAQALEQVLQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHA
Sbjct: 61 GQHLAQALEQVLQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHA 120
Query: 121 GEEVKTYQMVVGAELADLTVVKAVVHVAPLASVHQLILFEVQLPPCSKLPGSEQAVLLQQ 180
GEEVKTYQMVVGAELADLTVVKAVVHVAPLASVHQLILFEVQLPPCSKLPGSEQAVLLQQ
Sbjct: 121 GEEVKTYQMVVGAELADLTVVKAVVHVAPLASVHQLILFEVQLPPCSKLPGSEQAVLLQQ 180
Query: 181 KHQVLVYCPMHRVPQDDHELIVKQLPHFGGPQKDHDAQGAQPSSFLCTGWLCGWLGQKER 240
KHQVLVYCPMHRVPQDDHELIVKQLPHFGGPQKDHDAQGAQPSSFLCTGWLCGWLGQKER
Sbjct: 181 KHQVLVYCPMHRVPQDDHELIVKQLPHFGGPQKDHDAQGAQPSSFLCTGWLCGWLGQKER 240
Query: 241 RAGRDSPLGGAPSAGWG 257
RAGRDSPLGGAPSAGWG
Sbjct: 241 RAGRDSPLGGAPSAGWG 257
>gi|239750294 PREDICTED: hypothetical protein XP_002347346 [Homo
sapiens]
Length = 257
Score = 530 bits (1364), Expect = e-151
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MQVQYIEVMFTCLGGAVEVGFDHFVFQEGGLLPPELGRKKTPGDFLAHRHGRVPHQEARL 60
MQVQYIEVMFTCLGGAVEVGFDHFVFQEGGLLPPELGRKKTPGDFLAHRHGRVPHQEARL
Sbjct: 1 MQVQYIEVMFTCLGGAVEVGFDHFVFQEGGLLPPELGRKKTPGDFLAHRHGRVPHQEARL 60
Query: 61 GQHLAQALEQVLQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHA 120
GQHLAQALEQVLQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHA
Sbjct: 61 GQHLAQALEQVLQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHA 120
Query: 121 GEEVKTYQMVVGAELADLTVVKAVVHVAPLASVHQLILFEVQLPPCSKLPGSEQAVLLQQ 180
GEEVKTYQMVVGAELADLTVVKAVVHVAPLASVHQLILFEVQLPPCSKLPGSEQAVLLQQ
Sbjct: 121 GEEVKTYQMVVGAELADLTVVKAVVHVAPLASVHQLILFEVQLPPCSKLPGSEQAVLLQQ 180
Query: 181 KHQVLVYCPMHRVPQDDHELIVKQLPHFGGPQKDHDAQGAQPSSFLCTGWLCGWLGQKER 240
KHQVLVYCPMHRVPQDDHELIVKQLPHFGGPQKDHDAQGAQPSSFLCTGWLCGWLGQKER
Sbjct: 181 KHQVLVYCPMHRVPQDDHELIVKQLPHFGGPQKDHDAQGAQPSSFLCTGWLCGWLGQKER 240
Query: 241 RAGRDSPLGGAPSAGWG 257
RAGRDSPLGGAPSAGWG
Sbjct: 241 RAGRDSPLGGAPSAGWG 257
>gi|239744603 PREDICTED: hypothetical protein XP_002343238 [Homo
sapiens]
Length = 257
Score = 530 bits (1364), Expect = e-151
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MQVQYIEVMFTCLGGAVEVGFDHFVFQEGGLLPPELGRKKTPGDFLAHRHGRVPHQEARL 60
MQVQYIEVMFTCLGGAVEVGFDHFVFQEGGLLPPELGRKKTPGDFLAHRHGRVPHQEARL
Sbjct: 1 MQVQYIEVMFTCLGGAVEVGFDHFVFQEGGLLPPELGRKKTPGDFLAHRHGRVPHQEARL 60
Query: 61 GQHLAQALEQVLQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHA 120
GQHLAQALEQVLQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHA
Sbjct: 61 GQHLAQALEQVLQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHA 120
Query: 121 GEEVKTYQMVVGAELADLTVVKAVVHVAPLASVHQLILFEVQLPPCSKLPGSEQAVLLQQ 180
GEEVKTYQMVVGAELADLTVVKAVVHVAPLASVHQLILFEVQLPPCSKLPGSEQAVLLQQ
Sbjct: 121 GEEVKTYQMVVGAELADLTVVKAVVHVAPLASVHQLILFEVQLPPCSKLPGSEQAVLLQQ 180
Query: 181 KHQVLVYCPMHRVPQDDHELIVKQLPHFGGPQKDHDAQGAQPSSFLCTGWLCGWLGQKER 240
KHQVLVYCPMHRVPQDDHELIVKQLPHFGGPQKDHDAQGAQPSSFLCTGWLCGWLGQKER
Sbjct: 181 KHQVLVYCPMHRVPQDDHELIVKQLPHFGGPQKDHDAQGAQPSSFLCTGWLCGWLGQKER 240
Query: 241 RAGRDSPLGGAPSAGWG 257
RAGRDSPLGGAPSAGWG
Sbjct: 241 RAGRDSPLGGAPSAGWG 257
>gi|21389447 TBC1 domain family, member 20 [Homo sapiens]
Length = 403
Score = 33.9 bits (76), Expect = 0.14
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 28 EGGLLPPELGRKKTPGDFLAHRHGRVPHQEARLGQHLAQALEQVLQVLQVASPGVRTIPG 87
EGGLL E+ RK P + + P G++L Q + QVL +R P
Sbjct: 57 EGGLLTDEIRRKVWPKLLNVNANDPPPIS----GKNLRQMSKDYQQVLLDVRRSLRRFPP 112
Query: 88 DVPE---AGIHDDQVGGVLARLQLFQDGLEVIGVHAGEEVKTYQMVVGAELADLTVVKAV 144
+PE G+ ++ + +L L+ G H + V T+ +VVG LA V K
Sbjct: 113 GMPEEQREGLQEELIDIILLILERNPQLHYYQGYH--DIVVTFLLVVGERLATSLVEKLS 170
Query: 145 VH 146
H
Sbjct: 171 TH 172
>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
Length = 474
Score = 31.6 bits (70), Expect = 0.71
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 26/112 (23%)
Query: 20 GFDHFVFQEGGLLPPELGRKKTPGDFLAHRH------GRVPHQEARLGQHLAQALEQ--V 71
G D + +PP G PG FLAH H G +P G L QA++Q +
Sbjct: 135 GTDQTEAEAPAAVPPPQGGP--PGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCL 192
Query: 72 LQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHAGEE 123
L AS G +P P G Q+GL + G AG E
Sbjct: 193 ADHLLTASWGADPVPTKAPGEG----------------QEGLPLTGACAGGE 228
>gi|169160919 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 92 AGIHDDQVGGVLARLQLFQDGLEVIGVHAGEEVKTYQMVVGAELADLTVVKAV-VHVAPL 150
AG+H V+ ++++ + L + H G + +V AD + A+ HV L
Sbjct: 222 AGVHAQ----VVHQVRVTPEALPALAAHVGPLTRVRALVREEVRADAEGLAALGAHVGLL 277
Query: 151 ASVHQLILFEVQLP 164
A VH L+L +V+ P
Sbjct: 278 ARVHALVLHQVRAP 291
>gi|169162159 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 92 AGIHDDQVGGVLARLQLFQDGLEVIGVHAGEEVKTYQMVVGAELADLTVVKAV-VHVAPL 150
AG+H V+ ++++ + L + H G + +V AD + A+ HV L
Sbjct: 222 AGVHAQ----VVHQVRVTPEALPALAAHVGPLTRVRALVREEVRADAEGLAALGAHVGLL 277
Query: 151 ASVHQLILFEVQLP 164
A VH L+L +V+ P
Sbjct: 278 ARVHALVLHQVRAP 291
>gi|169161152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 92 AGIHDDQVGGVLARLQLFQDGLEVIGVHAGEEVKTYQMVVGAELADLTVVKAV-VHVAPL 150
AG+H V+ ++++ + L + H G + +V AD + A+ HV L
Sbjct: 222 AGVHAQ----VVHQVRVTPEALPALAAHVGPLTRVRALVREEVRADAEGLAALGAHVGLL 277
Query: 151 ASVHQLILFEVQLP 164
A VH L+L +V+ P
Sbjct: 278 ARVHALVLHQVRAP 291
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 30.4 bits (67), Expect = 1.6
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 26/110 (23%)
Query: 20 GFDHFVFQEGGLLPPELGRKKTPGDFLAHRH------GRVPHQEARLGQHLAQALEQ--V 71
G D + +PP G PG FLAH H G +P G L QA++Q +
Sbjct: 148 GTDQTEAEAPAAVPPPQGGP--PGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCL 205
Query: 72 LQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHAG 121
L AS G +P P G Q+GL + G AG
Sbjct: 206 ADHLLTASWGADPVPTKAPGEG----------------QEGLPLTGACAG 239
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 1.6
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 26/110 (23%)
Query: 20 GFDHFVFQEGGLLPPELGRKKTPGDFLAHRH------GRVPHQEARLGQHLAQALEQ--V 71
G D + +PP G PG FLAH H G +P G L QA++Q +
Sbjct: 135 GTDQTEAEAPAAVPPPQGGP--PGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCL 192
Query: 72 LQVLQVASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLEVIGVHAG 121
L AS G +P P G Q+GL + G AG
Sbjct: 193 ADHLLTASWGADPVPTKAPGEG----------------QEGLPLTGACAG 226
>gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens]
Length = 728
Score = 30.0 bits (66), Expect = 2.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 77 VASPGVRTIPGDVPEAGIHDDQVGGVLARLQLFQDGLE 114
+ SPG R +P VP+A D G+ A L+ + LE
Sbjct: 513 LGSPGARALPSAVPDAAAPADAPSGLEAELEHLRQALE 550
>gi|239754209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 29.3 bits (64), Expect = 3.5
Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 46 LAHRHGRVPHQEARLGQH----LAQALEQVLQVLQVASPGVRTIPG---DVPEAGIH--D 96
L H RVP QE +H L ALEQ+L VA G R + DV +H
Sbjct: 50 LVHALARVPVQEGLAPEHGRELLGDALEQLLDGRAVADEGGRHLQAAGRDVAHGRLHVVG 109
Query: 97 DQVGGVLARLQLFQDGLEVIGVH---AGEEVKTYQMVVGAELADLTVVKAVVHV 147
D + V A L L + L V +H A E+ Q+ A +A V V H+
Sbjct: 110 DPLHEVAAVLVLHVEHLLVHLLHGHAAPEDGSHRQVAAVARVAGGHHVLGVEHL 163
>gi|239748740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 29.3 bits (64), Expect = 3.5
Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 12/114 (10%)
Query: 46 LAHRHGRVPHQEARLGQH----LAQALEQVLQVLQVASPGVRTIPG---DVPEAGIH--D 96
L H RVP QE +H L ALEQ+L VA G R + DV +H
Sbjct: 50 LVHALARVPVQEGLAPEHGRELLGDALEQLLDGRAVADEGGRHLQAAGRDVAHGRLHVVG 109
Query: 97 DQVGGVLARLQLFQDGLEVIGVH---AGEEVKTYQMVVGAELADLTVVKAVVHV 147
D + V A L L + L V +H A E+ Q+ A +A V V H+
Sbjct: 110 DPLHEVAAVLVLHVEHLLVHLLHGHAAPEDGSHRQVAAVARVAGGHHVLGVEHL 163
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 28.5 bits (62), Expect = 6.0
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 28 EGGLLPPELGRKKTPGDFLAHRHGRVPHQEARLG-QHLAQALEQVLQVLQVASPGVRTIP 86
+GG LPP KK + + G +EA G + +A E++LQV ++P T P
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGT-P 311
Query: 87 G 87
G
Sbjct: 312 G 312
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 28.5 bits (62), Expect = 6.0
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 28 EGGLLPPELGRKKTPGDFLAHRHGRVPHQEARLG-QHLAQALEQVLQVLQVASPGVRTIP 86
+GG LPP KK + + G +EA G + +A E++LQV ++P T P
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGT-P 311
Query: 87 G 87
G
Sbjct: 312 G 312
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 28.5 bits (62), Expect = 6.0
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 28 EGGLLPPELGRKKTPGDFLAHRHGRVPHQEARLG-QHLAQALEQVLQVLQVASPGVRTIP 86
+GG LPP KK + + G +EA G + +A E++LQV ++P T P
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGT-P 311
Query: 87 G 87
G
Sbjct: 312 G 312
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 28.5 bits (62), Expect = 6.0
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 28 EGGLLPPELGRKKTPGDFLAHRHGRVPHQEARLG-QHLAQALEQVLQVLQVASPGVRTIP 86
+GG LPP KK + + G +EA G + +A E++LQV ++P T P
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGT-P 311
Query: 87 G 87
G
Sbjct: 312 G 312
>gi|4885649 SUMO-1 activating enzyme subunit 2 [Homo sapiens]
Length = 640
Score = 28.5 bits (62), Expect = 6.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 76 QVASPGVRTIPGDV---PEAGIHDDQVGGVLARLQLFQDGLEVIGVHAGEE 123
+V S G T D P+ G+ D QV V + +LF +E + VH E+
Sbjct: 286 EVQSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEK 336
>gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens]
Length = 1342
Score = 28.1 bits (61), Expect = 7.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 188 CPMHRVP---------QDDHELIVKQLPHFGGPQKDHDAQGAQPSS 224
CP+H VP +D+E + +Q GGP D+ A GA P+S
Sbjct: 1241 CPLHPVPIMPTAGTTPDEDYEYMNRQRDG-GGPGGDYAAMGACPAS 1285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,202,412
Number of Sequences: 37866
Number of extensions: 530320
Number of successful extensions: 1253
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 22
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.