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Search of human proteins with 239743857
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743857 PREDICTED: hypothetical protein XP_002342979 [Homo
sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743857 PREDICTED: hypothetical protein XP_002342979 [Homo ... 336 6e-93
gi|239755066 PREDICTED: similar to tight junction protein 2 (zon... 333 3e-92
gi|239749588 PREDICTED: hypothetical protein XP_002347097 [Homo ... 333 3e-92
gi|40254988 LSM domain containing 1 [Homo sapiens] 29 1.6
gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens] 29 2.1
gi|21717832 sperm equatorial segment protein 1 [Homo sapiens] 29 2.1
gi|46410931 attractin-like 1 [Homo sapiens] 28 2.7
gi|54607051 glucocerebrosidase precursor [Homo sapiens] 28 4.6
gi|54607049 glucocerebrosidase precursor [Homo sapiens] 28 4.6
gi|54607047 glucocerebrosidase precursor [Homo sapiens] 28 4.6
gi|54607045 glucocerebrosidase precursor [Homo sapiens] 28 4.6
gi|54607043 glucocerebrosidase precursor [Homo sapiens] 28 4.6
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 27 6.0
gi|116325989 hyperpolarization activated cyclic nucleotide-gated... 27 7.8
gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo ... 27 7.8
gi|48255955 plasma membrane calcium ATPase 3 isoform 3b [Homo sa... 27 7.8
gi|48255953 plasma membrane calcium ATPase 3 isoform 3a [Homo sa... 27 7.8
gi|39725717 coiled-coil domain containing 141 [Homo sapiens] 27 7.8
>gi|239743857 PREDICTED: hypothetical protein XP_002342979 [Homo
sapiens]
Length = 163
Score = 336 bits (861), Expect = 6e-93
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MLISSHQSLVTEPVFQRKPETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSKGKEEAAK 60
MLISSHQSLVTEPVFQRKPETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSKGKEEAAK
Sbjct: 1 MLISSHQSLVTEPVFQRKPETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSKGKEEAAK 60
Query: 61 RQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPS 120
RQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPS
Sbjct: 61 RQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPS 120
Query: 121 VLNLHQLSPGFSMRTHELESHHVSMVHSNWRRTIPAAWQEWLV 163
VLNLHQLSPGFSMRTHELESHHVSMVHSNWRRTIPAAWQEWLV
Sbjct: 121 VLNLHQLSPGFSMRTHELESHHVSMVHSNWRRTIPAAWQEWLV 163
>gi|239755066 PREDICTED: similar to tight junction protein 2 (zona
occludens 2) [Homo sapiens]
Length = 163
Score = 333 bits (855), Expect = 3e-92
Identities = 162/163 (99%), Positives = 162/163 (99%)
Query: 1 MLISSHQSLVTEPVFQRKPETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSKGKEEAAK 60
MLISSHQSLVTEPVFQRKPETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSKGKEEAAK
Sbjct: 1 MLISSHQSLVTEPVFQRKPETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSKGKEEAAK 60
Query: 61 RQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPS 120
RQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQ EPS
Sbjct: 61 RQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQIEPS 120
Query: 121 VLNLHQLSPGFSMRTHELESHHVSMVHSNWRRTIPAAWQEWLV 163
VLNLHQLSPGFSMRTHELESHHVSMVHSNWRRTIPAAWQEWLV
Sbjct: 121 VLNLHQLSPGFSMRTHELESHHVSMVHSNWRRTIPAAWQEWLV 163
>gi|239749588 PREDICTED: hypothetical protein XP_002347097 [Homo
sapiens]
Length = 163
Score = 333 bits (855), Expect = 3e-92
Identities = 162/163 (99%), Positives = 162/163 (99%)
Query: 1 MLISSHQSLVTEPVFQRKPETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSKGKEEAAK 60
MLISSHQSLVTEPVFQRKPETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSKGKEEAAK
Sbjct: 1 MLISSHQSLVTEPVFQRKPETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSKGKEEAAK 60
Query: 61 RQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPS 120
RQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQ EPS
Sbjct: 61 RQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQIEPS 120
Query: 121 VLNLHQLSPGFSMRTHELESHHVSMVHSNWRRTIPAAWQEWLV 163
VLNLHQLSPGFSMRTHELESHHVSMVHSNWRRTIPAAWQEWLV
Sbjct: 121 VLNLHQLSPGFSMRTHELESHHVSMVHSNWRRTIPAAWQEWLV 163
>gi|40254988 LSM domain containing 1 [Homo sapiens]
Length = 173
Score = 29.3 bits (64), Expect = 1.6
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 45 VLHVAWDSKGKEE--AAKRQLLMRKNSYCFLIYILQVRKQNTDFGPLKQV---TGSDCSV 99
+LH A DS G+ E AA+R R+ L +++R TD L T DC+V
Sbjct: 70 LLHPAQDSDGEREDSAAERA---RQQLEALLNKTMRIRM--TDGRTLVGCFLCTDRDCNV 124
Query: 100 LLNSEQKATDSSNPVPQTEPSVLNLHQLSPGFSMRTHELE 139
+L S Q+ S+ EP VL L + PG + + E++
Sbjct: 125 ILGSAQEFLKPSDSFSAGEPRVLGL-AMVPGHHIVSIEVQ 163
>gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens]
Length = 636
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 86 FGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPSVLNLHQLSPGFSMRTHELESHHVSM 145
F PL ++TG D +V + A S P P +P S F + T E ++ S
Sbjct: 83 FDPLAELTGKDSNVTASPTAPACPSDKPAPVQKPPSSG---TSSEFEVVTPEEQNSPESS 139
Query: 146 VHSN 149
H+N
Sbjct: 140 SHAN 143
>gi|21717832 sperm equatorial segment protein 1 [Homo sapiens]
Length = 350
Score = 28.9 bits (63), Expect = 2.1
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 80 RKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPS 120
+K++T+ P + ++ S++L++E+ ++ P P+ EP+
Sbjct: 112 KKKHTESTPFWSIKPNNVSIVLHAEEPYIENEEPEPEPEPA 152
>gi|46410931 attractin-like 1 [Homo sapiens]
Length = 1379
Score = 28.5 bits (62), Expect = 2.7
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 31 ACTFKMLALLKAVW-VLHVAWDSKGKEEAAKRQLLMRKNSYCFLIYILQVRKQNTDF--G 87
+C +L + VW + W S+ +E+ + + M + + L+V + T+F G
Sbjct: 1239 SCFLSLLLVAAVVWKIKQTCWASRRREQLLRERQQMASRPFASVDVALEVGAEQTEFLRG 1298
Query: 88 PLK 90
PL+
Sbjct: 1299 PLE 1301
>gi|54607051 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 80 RKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPSVLNLHQLSPGFSMRTH 136
+K + D L GS V+LN K P+ +P+V L +SPG+S+ T+
Sbjct: 479 QKNDLDAVALMHPDGSAVVVVLNRSSKDV----PLTIKDPAVGFLETISPGYSIHTY 531
>gi|54607049 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 80 RKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPSVLNLHQLSPGFSMRTH 136
+K + D L GS V+LN K P+ +P+V L +SPG+S+ T+
Sbjct: 479 QKNDLDAVALMHPDGSAVVVVLNRSSKDV----PLTIKDPAVGFLETISPGYSIHTY 531
>gi|54607047 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 80 RKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPSVLNLHQLSPGFSMRTH 136
+K + D L GS V+LN K P+ +P+V L +SPG+S+ T+
Sbjct: 479 QKNDLDAVALMHPDGSAVVVVLNRSSKDV----PLTIKDPAVGFLETISPGYSIHTY 531
>gi|54607045 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 80 RKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPSVLNLHQLSPGFSMRTH 136
+K + D L GS V+LN K P+ +P+V L +SPG+S+ T+
Sbjct: 479 QKNDLDAVALMHPDGSAVVVVLNRSSKDV----PLTIKDPAVGFLETISPGYSIHTY 531
>gi|54607043 glucocerebrosidase precursor [Homo sapiens]
Length = 536
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 80 RKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPSVLNLHQLSPGFSMRTH 136
+K + D L GS V+LN K P+ +P+V L +SPG+S+ T+
Sbjct: 479 QKNDLDAVALMHPDGSAVVVVLNRSSKDV----PLTIKDPAVGFLETISPGYSIHTY 531
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 27.3 bits (59), Expect = 6.0
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 56 EEAAKRQLLMRKNSYCFLIYILQVRKQ-NTDFGPLKQVTGSDCSVLLNSEQKATDSSNPV 114
++A + + + + C I LQ++ Q N GP G ++ + D +
Sbjct: 103 QDATRPVRVFSQENVCDRIKALQLKIQCNVKMGPPPPPGGLPAKRGEDAGMSSEDDG--L 160
Query: 115 PQTEPSVLNLHQLSPGFSMRTHELESHHVS 144
P++ P + LH + PG +++ + HVS
Sbjct: 161 PRSPPEMSLLHDVGPGTTIKVSVVSPDHVS 190
>gi|116325989 hyperpolarization activated cyclic nucleotide-gated
potassium channel 1 [Homo sapiens]
Length = 890
Score = 26.9 bits (58), Expect = 7.8
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 93 TGSDCSVLLNSEQKATDSSNPVPQTEPSVLNLHQLSPGFSMRTHELESHHVSMVHSNWRR 152
T S S++ Q+ S P PQT+P + +PG S +E+ ++ ++N R
Sbjct: 723 TASQLSLMQQQPQQQVQQSQP-PQTQPQQPSPQPQTPGSSTPKNEVHKSTQALHNTNLTR 781
Query: 153 TI 154
+
Sbjct: 782 EV 783
>gi|150417984 ATP-binding cassette, sub-family A, member 7 [Homo
sapiens]
Length = 2146
Score = 26.9 bits (58), Expect = 7.8
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 37 LALLKAVWVLHVAWDSKGKEEAAKRQLLMRKNSYCFLIYILQVRKQNTDFGPLKQVTGSD 96
LAL +A LH ++ E+ A+ L +R S L +LQ R + T GPL+ ++ +
Sbjct: 171 LALGQAQEPLHSLLEAA--EDLAQELLALR--SLVELRALLQ-RPRGTS-GPLELLSEAL 224
Query: 97 CSVLLNSEQ--------KATDSSNPVPQTEPSVLNLHQLSPGFSMRTHELESHHVSMVHS 148
CSV S +A+D V Q S L LSP S L+SH +S +
Sbjct: 225 CSVRGPSSTVGPSLNWYEASDLMELVGQEPESALPDSSLSPACSELIGALDSHPLSRL-- 282
Query: 149 NWRRTIP 155
WRR P
Sbjct: 283 LWRRLKP 289
>gi|48255955 plasma membrane calcium ATPase 3 isoform 3b [Homo
sapiens]
Length = 1220
Score = 26.9 bits (58), Expect = 7.8
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 20 ETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSK----GKEEAAKRQLLMRKNSYCFLIY 75
+TH PSA T K+L LL ++ A+ +K KE A RQ + K L +
Sbjct: 492 DTHYKEIPAPSALTPKILDLLVHAISINSAYTTKILPPEKEGALPRQ-VGNKTECALLGF 550
Query: 76 ILQVRKQNTDFGPLKQVTGSD 96
+L +++ DF P+++ D
Sbjct: 551 VLDLKR---DFQPVREQIPED 568
>gi|48255953 plasma membrane calcium ATPase 3 isoform 3a [Homo
sapiens]
Length = 1173
Score = 26.9 bits (58), Expect = 7.8
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 20 ETHAGSYRVPSACTFKMLALLKAVWVLHVAWDSK----GKEEAAKRQLLMRKNSYCFLIY 75
+TH PSA T K+L LL ++ A+ +K KE A RQ + K L +
Sbjct: 492 DTHYKEIPAPSALTPKILDLLVHAISINSAYTTKILPPEKEGALPRQ-VGNKTECALLGF 550
Query: 76 ILQVRKQNTDFGPLKQVTGSD 96
+L +++ DF P+++ D
Sbjct: 551 VLDLKR---DFQPVREQIPED 568
>gi|39725717 coiled-coil domain containing 141 [Homo sapiens]
Length = 875
Score = 26.9 bits (58), Expect = 7.8
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 37 LALLKAVWVLHVAWDSKGKEEAAKRQLLMRKNSYCF------------------LIYILQ 78
L+LL+ W L GK++ A + ++K S+ L +IL
Sbjct: 88 LSLLRLAWQLKATESKPGKQQWAAFKEQLKKTSHNLKLLQEALMPVSALDLGGSLQFILD 147
Query: 79 VRKQNTDFGPLKQVTGSDCSVLLNSEQKATDSSNPVPQTEPSVLNL 124
+R++ D P Q + ++ ++ T PV + + +L
Sbjct: 148 LRQKWNDMKPQFQQLNDEVQYIMKESEELTGRGAPVKEKSQQLKDL 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.129 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,918,263
Number of Sequences: 37866
Number of extensions: 291221
Number of successful extensions: 640
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 18
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.