Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239743622

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743622 PREDICTED: hypothetical protein XP_002342908 [Homo
sapiens]
         (145 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754942 PREDICTED: hypothetical protein [Homo sapiens]           296   5e-81
gi|239749484 PREDICTED: hypothetical protein [Homo sapiens]           296   5e-81
gi|239743622 PREDICTED: hypothetical protein XP_002342908 [Homo ...   296   5e-81
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            41   4e-04
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens]            39   0.002
gi|38787904 BMP-2 inducible kinase isoform b [Homo sapiens]            39   0.002
gi|21687252 zinc finger protein 296 [Homo sapiens]                     37   0.004
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             37   0.006
gi|5730027 KH domain containing, RNA binding, signal transductio...    37   0.008
gi|59806361 hypothetical protein LOC387104 [Homo sapiens]              35   0.017
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]            35   0.022
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]            35   0.022
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ...    35   0.022
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]     35   0.022
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]     35   0.022
gi|7710121 engrailed homeobox 2 [Homo sapiens]                         34   0.038
gi|4758024 coilin [Homo sapiens]                                       34   0.038
gi|26787962 advanced glycosylation end product-specific receptor...    34   0.049
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]            33   0.064
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]            33   0.064
gi|25777645 small conductance calcium-activated potassium channe...    33   0.064
gi|239754620 PREDICTED: hypothetical protein [Homo sapiens]            33   0.084
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa...    33   0.084
gi|122937319 even-skipped homeobox 2 [Homo sapiens]                    33   0.084
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]         33   0.11 
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ...    33   0.11 
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ...    33   0.11 

>gi|239754942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 145

 Score =  296 bits (757), Expect = 5e-81
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MQSLLEHGLLLLLFFLLPIHDGQDDFPLLLREVAEVRHLGLQRRLRGRRDGSQAAPGPDR 60
           MQSLLEHGLLLLLFFLLPIHDGQDDFPLLLREVAEVRHLGLQRRLRGRRDGSQAAPGPDR
Sbjct: 1   MQSLLEHGLLLLLFFLLPIHDGQDDFPLLLREVAEVRHLGLQRRLRGRRDGSQAAPGPDR 60

Query: 61  SRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRG 120
           SRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRG
Sbjct: 61  SRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRG 120

Query: 121 GRARGEGGLRSALREMFLLPGGEGL 145
           GRARGEGGLRSALREMFLLPGGEGL
Sbjct: 121 GRARGEGGLRSALREMFLLPGGEGL 145


>gi|239749484 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 145

 Score =  296 bits (757), Expect = 5e-81
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MQSLLEHGLLLLLFFLLPIHDGQDDFPLLLREVAEVRHLGLQRRLRGRRDGSQAAPGPDR 60
           MQSLLEHGLLLLLFFLLPIHDGQDDFPLLLREVAEVRHLGLQRRLRGRRDGSQAAPGPDR
Sbjct: 1   MQSLLEHGLLLLLFFLLPIHDGQDDFPLLLREVAEVRHLGLQRRLRGRRDGSQAAPGPDR 60

Query: 61  SRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRG 120
           SRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRG
Sbjct: 61  SRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRG 120

Query: 121 GRARGEGGLRSALREMFLLPGGEGL 145
           GRARGEGGLRSALREMFLLPGGEGL
Sbjct: 121 GRARGEGGLRSALREMFLLPGGEGL 145


>gi|239743622 PREDICTED: hypothetical protein XP_002342908 [Homo
           sapiens]
          Length = 145

 Score =  296 bits (757), Expect = 5e-81
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MQSLLEHGLLLLLFFLLPIHDGQDDFPLLLREVAEVRHLGLQRRLRGRRDGSQAAPGPDR 60
           MQSLLEHGLLLLLFFLLPIHDGQDDFPLLLREVAEVRHLGLQRRLRGRRDGSQAAPGPDR
Sbjct: 1   MQSLLEHGLLLLLFFLLPIHDGQDDFPLLLREVAEVRHLGLQRRLRGRRDGSQAAPGPDR 60

Query: 61  SRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRG 120
           SRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRG
Sbjct: 61  SRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRG 120

Query: 121 GRARGEGGLRSALREMFLLPGGEGL 145
           GRARGEGGLRSALREMFLLPGGEGL
Sbjct: 121 GRARGEGGLRSALREMFLLPGGEGL 145


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 34  AEVRHLGLQRRLRGRRDGSQ-AAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGA-AAGAA 91
           AE R    +RR + R DG Q AA G +      W R     R G S G GG  +  +G A
Sbjct: 683 AEARKKPRRRRAKSRGDGGQNAAVGINP-----WQRRGKKPRLGKSRGGGGAKSRGSGGA 737

Query: 92  SSAGTNTYKSMAFNPRRQPPSPKKSRGRGGRARGEGGLRSALREMFLLPGGE 143
            S G+   KS +    ++  + K   G G + R  GG +S   E  +  GG+
Sbjct: 738 KSRGSGGAKSRS---GKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQ 786



 Score = 38.9 bits (89), Expect = 0.002
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 34  AEVRHLGLQRRLRGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGG--TGAAAGAA 91
           A  + LG + R   RR    AA G  + R   W        G  + G+G     AAAG  
Sbjct: 111 AGTKSLGGRGRKPRRRGQKAAATGSKKPR---WRAQKSAAAGSKNRGAGAQKAAAAAGVK 167

Query: 92  SSAGTNTYKSMAFNPRRQPPSPKKSRGRGGRARGEGGLRSALRE 135
           S  G    K+ A   + +  S KK R RG ++RG+   +   RE
Sbjct: 168 SQGGEKPQKAAAAGAKSR--SGKKPRRRGAKSRGDEDKKGRQRE 209



 Score = 33.1 bits (74), Expect = 0.084
 Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 40  GLQRRLRGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTY 99
           G + RLRG++    A  G +  +H  W +   G  G  + G G   AAA    S G    
Sbjct: 68  GKKARLRGQKG---AVAGKEARQH--WQKAA-GAGGAENRGGGEQKAAAAGTKSLGGRGR 121

Query: 100 KSMAFNPRRQPPSPKKSRGR-------GGRARGEGGLRSALREMFLLPGGE 143
           K      +      KK R R       G + RG G  ++A        GGE
Sbjct: 122 KPRRRGQKAAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGE 172



 Score = 30.4 bits (67), Expect = 0.55
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 75  GGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRGGRARGEGGLRSAL 133
           G  S GSGG        ++AG+ +  + A    ++  + KK R R  ++RG+GG  +A+
Sbjct: 650 GATSRGSGGKQPRWQKPAAAGSESSAAAAVG--QEAEARKKPRRRRAKSRGDGGQNAAV 706



 Score = 30.0 bits (66), Expect = 0.71
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 46  RGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGA----AAGAASSAGTNTY-- 99
           RG         G  +SR    +++  GK+   S   GG GA      GA S +G      
Sbjct: 724 RGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTA 783

Query: 100 --KSMAFNPRRQPPSPKKSRGRGGRARGEG 127
             +  A    ++PP  K   GRG +A   G
Sbjct: 784 GGQKAAAAGGKKPPRVKSRGGRGQKAAAGG 813



 Score = 26.6 bits (57), Expect = 7.9
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 43  RRLRGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSM 102
           RR +    G+++  G D+       R   G++             A AA   G  + K  
Sbjct: 369 RRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKK-- 426

Query: 103 AFNPRRQPPSPKKSRGRGGRARGEGGLRSALR 134
              PRR+   PK ++ RGG++R  GG +   R
Sbjct: 427 ---PRRR--GPKAAKSRGGKSRSGGGKKPRRR 453



 Score = 26.6 bits (57), Expect = 7.9
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 49  RDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRR 108
           R G    PG        W +   G     S G GG  A    A+  G  + K      ++
Sbjct: 588 RGGGDKQPG--------WQKAAAGVTKSRS-GDGGKKAWRQKAAGTGAKSRKKPWRRGQK 638

Query: 109 QPPSPKKSRGRGGRARGEGG 128
              + +K+   G  +RG GG
Sbjct: 639 DAAAAEKAWATGATSRGSGG 658


>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 73  KRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQP---PSPKKSRGRGGRARGEGGL 129
           K GG   G+GG    AG A  A            RR P   P+PK+ +G G  AR +   
Sbjct: 50  KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADA-- 107

Query: 130 RSALREMFLLPGGEG 144
            +A +     PGGEG
Sbjct: 108 LTAGKSAEPAPGGEG 122


>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 73  KRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQP---PSPKKSRGRGGRARGEGGL 129
           K GG   G+GG    AG A  A            RR P   P+PK+ +G G  AR +   
Sbjct: 50  KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADA-- 107

Query: 130 RSALREMFLLPGGEG 144
            +A +     PGGEG
Sbjct: 108 LTAGKSAEPAPGGEG 122


>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 73  KRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQP---PSPKKSRGRGGRARGEGGL 129
           K GG   G+GG    AG A  A            RR P   P+PK+ +G G  AR +   
Sbjct: 19  KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADA-- 76

Query: 130 RSALREMFLLPGGEG 144
            +A +     PGGEG
Sbjct: 77  LTAGKSAEPAPGGEG 91


>gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens]
          Length = 1161

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 72  GKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRGG-----RARGE 126
           G  GG + G G  GA AGA   +G ++     F   R   + ++S   GG       R  
Sbjct: 12  GGSGGGAAGGGAGGAGAGAGCGSGGSSVGVRVFAVGRHQVTLEESLAEGGFSTVFLVRTH 71

Query: 127 GGLRSALREMFL 138
           GG+R AL+ M++
Sbjct: 72  GGIRCALKRMYV 83


>gi|38787904 BMP-2 inducible kinase isoform b [Homo sapiens]
          Length = 662

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 72  GKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRGG-----RARGE 126
           G  GG + G G  GA AGA   +G ++     F   R   + ++S   GG       R  
Sbjct: 12  GGSGGGAAGGGAGGAGAGAGCGSGGSSVGVRVFAVGRHQVTLEESLAEGGFSTVFLVRTH 71

Query: 127 GGLRSALREMFL 138
           GG+R AL+ M++
Sbjct: 72  GGIRCALKRMYV 83


>gi|21687252 zinc finger protein 296 [Homo sapiens]
          Length = 475

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 49  RDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAA-------AGAASSAGTNTYKS 101
           ++ + AAP P+ + H     +TL   GG   G+  T          +GA +  G +T+ +
Sbjct: 296 QEQASAAP-PEPAVHAAAPTSTLPCSGGEGAGAAATAGVQEPGAPGSGAQAGPGGDTWGA 354

Query: 102 MAFNPRRQPP-----SPKKSRGRGGRARGEGG 128
           +    R  P      SPKK    GG++RG GG
Sbjct: 355 ITTEQRTDPANSQKASPKKMPKSGGKSRGPGG 386


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 44  RLRGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMA 103
           R RGRR   +  P P R      SR       G+  G+ G G   G+    G +  ++  
Sbjct: 404 RRRGRR---RPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKE 460

Query: 104 FNPRRQPPSPKKSRGRGGRARGEGGLRSA 132
             PR +P S   S G  GR  G  G  S+
Sbjct: 461 RPPRARPASTSPSPGAHGRRGGPEGKSSS 489



 Score = 36.6 bits (83), Expect = 0.008
 Identities = 36/115 (31%), Positives = 47/115 (40%), Gaps = 21/115 (18%)

Query: 39  LGLQRRLRGRRDGSQAAPG---PDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAG 95
           L  + R  GR+ GSQ + G   P  S    W      + GG+   SG  G   G+A S  
Sbjct: 278 LSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQ--RNGGSGQRSGAHGGRPGSAHSPP 335

Query: 96  TNTY--------KSMAFNPR-----RQPPSPKK---SRGRGGRARGEGGLRSALR 134
                       K+ A  P      ++ PSP+    S+GRGGRA G  G R   R
Sbjct: 336 DKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRR 390


>gi|5730027 KH domain containing, RNA binding, signal transduction
           associated 1 [Homo sapiens]
          Length = 443

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 74  RGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRGGRARGEGGLRSAL 133
           R   S+G  G+   +GA        + S+   P RQPP P +SRG GG +RG      A 
Sbjct: 10  RMSRSSGRSGSMDPSGA--------HPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPAT 61

Query: 134 REMFLLP 140
           +   LLP
Sbjct: 62  QPPPLLP 68


>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
          Length = 947

 Score = 35.4 bits (80), Expect = 0.017
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 45  LRGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAF 104
           L GRR G    P  +  R +    + LG+      G GG G   GA   +G         
Sbjct: 135 LGGRRPG----PPEEPPRELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSGERE------ 184

Query: 105 NPRRQPPSPKKSRGRGGRARGEGG 128
               QPP P+  RG+G RA+  GG
Sbjct: 185 GGAPQPPPPRGWRGKGVRAQQRGG 208



 Score = 31.2 bits (69), Expect = 0.32
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 17/89 (19%)

Query: 47  GRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNP 106
           G R+G    P P R    W  +   G R     GSGG GA+   +SS+   T        
Sbjct: 181 GEREGGAPQPPPPRG---WRGK---GVRAQQRGGSGGEGASPSPSSSSAGKT-------- 226

Query: 107 RRQPPSPKKSRGRGGRARGEGGLRSALRE 135
              P +  ++ G G    G GG  S  +E
Sbjct: 227 ---PGTGSRNSGSGVAGGGSGGGGSYWKE 252


>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 466

 Score = 35.0 bits (79), Expect = 0.022
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 46  RGRRDGSQAAPGPDRSRHVWWSRTTL-GKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAF 104
           R R  G  A  GP R R    +RT L G+R   + G G   A +  A S   +       
Sbjct: 80  RPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPA 139

Query: 105 NPRRQPPSPKKSRGRGGRARGEG 127
           +  R+P +   + G GGRA   G
Sbjct: 140 SALRRPLTQWDASGGGGRASHSG 162


>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 650

 Score = 35.0 bits (79), Expect = 0.022
 Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 22/113 (19%)

Query: 50  DGSQAAPGPDRSRHVWWSRTTLGKRG----------GNSTGSGGTGAAAGAASSAGTNTY 99
           +G++  PGP  SR  W     L  RG           +        AA  +A+SA   T 
Sbjct: 194 EGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTA 253

Query: 100 KSMAFNP------RRQPPSPKKSRG------RGGRARGEGGLRSALREMFLLP 140
            S    P      RR+ P P ++ G       G RA GEG   S    + L P
Sbjct: 254 PSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVELGP 306



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 52  SQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQP- 110
           S A P   RS+     R     R G + G G  GA A    SAG+ T + +   P  +P 
Sbjct: 256 SVAQPSSARSQR---RRAPCPHRAGGADGVGSHGARAPGEGSAGSGT-ERVELGPHVRPF 311

Query: 111 -PSPKKSRGRGGRARGEGGLRSALREMFLLPGGEGL 145
              P  S   GG  R    L   L  + L P   GL
Sbjct: 312 FLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTGL 347



 Score = 27.7 bits (60), Expect = 3.5
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 75  GGNSTGSGGTGAAAGAASS------------AGTNTYKSMAFNPRRQPPSPKKSRGRGGR 122
           G  + G GG   AAGAASS            + T+   +      R  P P  SR   GR
Sbjct: 152 GVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGR 211

Query: 123 ARGEGGLR 130
           A   GGLR
Sbjct: 212 A---GGLR 216


>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
           sapiens]
          Length = 725

 Score = 35.0 bits (79), Expect = 0.022
 Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 22/113 (19%)

Query: 50  DGSQAAPGPDRSRHVWWSRTTLGKRG----------GNSTGSGGTGAAAGAASSAGTNTY 99
           +G++  PGP  SR  W     L  RG           +        AA  +A+SA   T 
Sbjct: 194 EGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTA 253

Query: 100 KSMAFNP------RRQPPSPKKSRG------RGGRARGEGGLRSALREMFLLP 140
            S    P      RR+ P P ++ G       G RA GEG   S    + L P
Sbjct: 254 PSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVELGP 306



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 52  SQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQP- 110
           S A P   RS+     R     R G + G G  GA A    SAG+ T + +   P  +P 
Sbjct: 256 SVAQPSSARSQR---RRAPCPHRAGGADGVGSHGARAPGEGSAGSGT-ERVELGPHVRPF 311

Query: 111 -PSPKKSRGRGGRARGEGGLRSALREMFLLPGGEGL 145
              P  S   GG  R    L   L  + L P   GL
Sbjct: 312 FLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTGL 347



 Score = 27.7 bits (60), Expect = 3.5
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 75  GGNSTGSGGTGAAAGAASS------------AGTNTYKSMAFNPRRQPPSPKKSRGRGGR 122
           G  + G GG   AAGAASS            + T+   +      R  P P  SR   GR
Sbjct: 152 GVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGR 211

Query: 123 ARGEGGLR 130
           A   GGLR
Sbjct: 212 A---GGLR 216


>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
          Length = 1512

 Score = 35.0 bits (79), Expect = 0.022
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 43  RRLRGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSG-GTGAAAGAASSAGTNTYKS 101
           RR  G+R GS+A+    R  H    R  + K G +S+  G    A+A ++SS+      S
Sbjct: 217 RRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDS 276

Query: 102 MAFNPR----RQPPSPKK 115
            A   R    ++PPS  K
Sbjct: 277 KAHRSRTKSSKEPPSAYK 294



 Score = 28.1 bits (61), Expect = 2.7
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 83  GTGAAAGAASSAGTNTYK-SMAFNPRRQPPSPKKSRGRGGRARG-EGGLRSALREMFLLP 140
           GT AAA AA++A ++ +        +R     +++ GR  R RG   G  +  R +F LP
Sbjct: 65  GTAAAAAAAAAASSSCFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLP 124


>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
          Length = 1452

 Score = 35.0 bits (79), Expect = 0.022
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 43  RRLRGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSG-GTGAAAGAASSAGTNTYKS 101
           RR  G+R GS+A+    R  H    R  + K G +S+  G    A+A ++SS+      S
Sbjct: 217 RRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDS 276

Query: 102 MAFNPR----RQPPSPKK 115
            A   R    ++PPS  K
Sbjct: 277 KAHRSRTKSSKEPPSAYK 294



 Score = 28.1 bits (61), Expect = 2.7
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 83  GTGAAAGAASSAGTNTYK-SMAFNPRRQPPSPKKSRGRGGRARG-EGGLRSALREMFLLP 140
           GT AAA AA++A ++ +        +R     +++ GR  R RG   G  +  R +F LP
Sbjct: 65  GTAAAAAAAAAASSSCFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLP 124


>gi|7710121 engrailed homeobox 2 [Homo sapiens]
          Length = 333

 Score = 34.3 bits (77), Expect = 0.038
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 72  GKRGGNSTGSGGTGAAAGAASSAGTNTYKSM----AFNPRRQPP------SPKKSRGRGG 121
           G  GG   G+GG G A+GA    G    + +    +  PR+ PP       P  + G   
Sbjct: 91  GAGGGRGGGAGGEGGASGAEGGGGAGGSEQLLGSGSREPRQNPPCAPGAGGPLPAAGSDS 150

Query: 122 RARGEGGLRS 131
              GEGG ++
Sbjct: 151 PGDGEGGSKT 160


>gi|4758024 coilin [Homo sapiens]
          Length = 576

 Score = 34.3 bits (77), Expect = 0.038
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 56  PGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKK 115
           PGP  S        T G  G   +GS G G A GA+ S          +       S K 
Sbjct: 353 PGPGLSSQ------TAGAAGWRRSGSNGGGQAPGASPSVSLPASLGRGWGREENLFSWKG 406

Query: 116 SRGRGGRARGEG 127
           ++GRG R RG G
Sbjct: 407 AKGRGMRGRGRG 418


>gi|26787962 advanced glycosylation end product-specific receptor
           isoform 2 precursor [Homo sapiens]
          Length = 342

 Score = 33.9 bits (76), Expect = 0.049
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 49  RDGSQAAPGPDRSRHVWWSRTTLGK-RGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPR 107
           +D S    G  R+R    +    G+ R GNS+   G     G +  A      + A  PR
Sbjct: 259 KDVSDLERGAGRTRRGGANCRLCGRIRAGNSSPGPGDPGRPGDSRPAHWGHLVAKAATPR 318

Query: 108 RQPPSPKKSRGRGGRARGE 126
           R    P+K  GRGG  R E
Sbjct: 319 RGEEGPRKPGGRGGACRTE 337


>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 33.5 bits (75), Expect = 0.064
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 46  RGRRDGSQAAPGPDRSRHVWWSRTTL-GKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAF 104
           R R  G  A  GP R R    +RT L G+R   + G G   A +  A S   +       
Sbjct: 80  RPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPA 139

Query: 105 NPRRQPPSPKKSRGRGGRARGEG 127
           +  R+P +   + G GGR    G
Sbjct: 140 SALRRPLTQWDASGGGGRGSHSG 162


>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 33.5 bits (75), Expect = 0.064
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 46  RGRRDGSQAAPGPDRSRHVWWSRTTL-GKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAF 104
           R R  G  A  GP R R    +RT L G+R   + G G   A +  A S   +       
Sbjct: 80  RPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPA 139

Query: 105 NPRRQPPSPKKSRGRGGRARGEG 127
           +  R+P +   + G GGR    G
Sbjct: 140 SALRRPLTQWDASGGGGRGSHSG 162


>gi|25777645 small conductance calcium-activated potassium channel
           protein 2 isoform a [Homo sapiens]
          Length = 579

 Score = 33.5 bits (75), Expect = 0.064
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 72  GKRGGNSTGSGGTGAAAGAASSAGTNTYK 100
           G  GG STG GG G  +G  SS+GT + K
Sbjct: 83  GTGGGGSTGGGGGGGGSGHGSSSGTKSSK 111


>gi|239754620 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 551

 Score = 33.1 bits (74), Expect = 0.084
 Identities = 21/62 (33%), Positives = 26/62 (41%)

Query: 60  RSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGR 119
           R R + W        G      GGT   + AA+ A  +     A  PR  PPSP  S+GR
Sbjct: 362 RVRALLWDAGRGAAAGRGLCALGGTKRGSQAATGAQPSVATWRAVLPRTPPPSPPGSQGR 421

Query: 120 GG 121
            G
Sbjct: 422 QG 423


>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
           sapiens]
          Length = 443

 Score = 33.1 bits (74), Expect = 0.084
 Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 15/116 (12%)

Query: 29  LLREVAEVRHL----GLQRRLRGRRDGSQAAPG----------PDRSRHVWWSRTTLGKR 74
           LL   A + H     G+Q+   G R+      G          P    H W +  + G  
Sbjct: 11  LLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGG 70

Query: 75  GGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRGGRARGEGGLR 130
           GG   G GG G   G     G+    S    P  +P    +  GRG    G G L+
Sbjct: 71  GGGG-GGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQ 125


>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
          Length = 476

 Score = 33.1 bits (74), Expect = 0.084
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 71  LGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQ 109
           LG RGG   G GG G   G A + G + +   A  PR +
Sbjct: 409 LGSRGGGGGGGGGGGGGGGGAGAGGGSDFGCSAAAPRSE 447


>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
          Length = 474

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 72  GKRGGNSTGSGGTGAAAGAASSAGTNTYKSMAFNPRRQPPSPKKSRGRGGRARGEGGLRS 131
           G  GG   GS   G   G AS  G N+            P+ KKS G        GG+  
Sbjct: 165 GHGGGGGGGSSNAGGGGGGASGGGANS-----------KPAQKKSCGSKVAGGAGGGVSK 213

Query: 132 ALREMFLLPGGEG 144
              ++ L  GG G
Sbjct: 214 PHAKLILAGGGGG 226


>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
           sapiens]
          Length = 333

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 19/100 (19%)

Query: 44  RLRGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMA 103
           R RG R   ++  GP R   VW           +  G GG     G A  +G        
Sbjct: 219 RGRGPRRARRSGRGPRRGPEVW---------PRSEEGPGGLAEVRGGARRSGR------- 262

Query: 104 FNPRRQPPS-PKKSRGRGGRARGEGGLRSALREMFLLPGG 142
             PRR P   P+   G GG A   GG    L E+   PGG
Sbjct: 263 -GPRRGPEVWPRSEEGSGGLAEVRGG-PGGLAEVRGGPGG 300


>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
           sapiens]
          Length = 296

 Score = 32.7 bits (73), Expect = 0.11
 Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 19/100 (19%)

Query: 44  RLRGRRDGSQAAPGPDRSRHVWWSRTTLGKRGGNSTGSGGTGAAAGAASSAGTNTYKSMA 103
           R RG R   ++  GP R   VW           +  G GG     G A  +G        
Sbjct: 182 RGRGPRRARRSGRGPRRGPEVW---------PRSEEGPGGLAEVRGGARRSGR------- 225

Query: 104 FNPRRQPPS-PKKSRGRGGRARGEGGLRSALREMFLLPGG 142
             PRR P   P+   G GG A   GG    L E+   PGG
Sbjct: 226 -GPRRGPEVWPRSEEGSGGLAEVRGG-PGGLAEVRGGPGG 263


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,735,620
Number of Sequences: 37866
Number of extensions: 353961
Number of successful extensions: 4045
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 3147
Number of HSP's gapped (non-prelim): 910
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press