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Search of human proteins with 239743590
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo
sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754918 PREDICTED: similar to destrin [Homo sapiens] 211 1e-55
gi|239749458 PREDICTED: similar to destrin [Homo sapiens] 211 1e-55
gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo ... 211 1e-55
gi|5802966 destrin isoform a [Homo sapiens] 195 7e-51
gi|58530848 destrin isoform b [Homo sapiens] 161 1e-40
gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing... 160 2e-40
gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing... 159 4e-40
gi|113415024 PREDICTED: similar to destrin [Homo sapiens] 159 4e-40
gi|5031635 cofilin 1 (non-muscle) [Homo sapiens] 144 1e-35
gi|14719392 cofilin 2 [Homo sapiens] 134 2e-32
gi|33946278 cofilin 2 [Homo sapiens] 134 2e-32
gi|21071052 helicase-like transcription factor [Homo sapiens] 27 3.5
gi|21071054 helicase-like transcription factor [Homo sapiens] 27 3.5
gi|56121815 ADAM metallopeptidase with thrombospondin type 1 mot... 27 4.5
gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens] 26 5.9
gi|33519475 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kD... 26 7.7
gi|193788629 testis expressed 264 [Homo sapiens] 26 7.7
gi|7706708 testis expressed 264 [Homo sapiens] 26 7.7
gi|64276808 ADAM metallopeptidase with thrombospondin type 1 mot... 26 7.7
>gi|239754918 PREDICTED: similar to destrin [Homo sapiens]
Length = 103
Score = 211 bits (537), Expect = 1e-55
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
Query: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL
Sbjct: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
>gi|239749458 PREDICTED: similar to destrin [Homo sapiens]
Length = 103
Score = 211 bits (537), Expect = 1e-55
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
Query: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL
Sbjct: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
>gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo
sapiens]
Length = 103
Score = 211 bits (537), Expect = 1e-55
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
Query: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL
Sbjct: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
>gi|5802966 destrin isoform a [Homo sapiens]
Length = 165
Score = 195 bits (495), Expect = 7e-51
Identities = 96/103 (93%), Positives = 98/103 (95%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
Query: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
GVTIT PFKHFVGMLPEKDCR ALYDASFETKES EEL+FFL
Sbjct: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFL 103
>gi|58530848 destrin isoform b [Homo sapiens]
Length = 148
Score = 161 bits (407), Expect = 1e-40
Identities = 79/86 (91%), Positives = 81/86 (94%)
Query: 18 MKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGVTITGPFKHFVGMLPE 77
MKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDVGVTIT PFKHFVGMLPE
Sbjct: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
Query: 78 KDCRCALYDASFETKESSTEELIFFL 103
KDCR ALYDASFETKES EEL+FFL
Sbjct: 61 KDCRYALYDASFETKESRKEELMFFL 86
>gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 160 bits (406), Expect = 2e-40
Identities = 78/92 (84%), Positives = 82/92 (89%)
Query: 3 SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62
SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI GD+GV
Sbjct: 96 SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
Query: 63 TITGPFKHFVGMLPEKDCRCALYDASFETKES 94
TITGPFKHFVGMLPEKDC ALYDASFETK+S
Sbjct: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKS 187
>gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 159 bits (402), Expect = 4e-40
Identities = 77/92 (83%), Positives = 82/92 (89%)
Query: 3 SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62
SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI GD+GV
Sbjct: 96 SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
Query: 63 TITGPFKHFVGMLPEKDCRCALYDASFETKES 94
+ITGPFKHFVGMLPEKDC ALYDASFETK+S
Sbjct: 156 SITGPFKHFVGMLPEKDCCYALYDASFETKKS 187
>gi|113415024 PREDICTED: similar to destrin [Homo sapiens]
Length = 199
Score = 159 bits (402), Expect = 4e-40
Identities = 77/92 (83%), Positives = 82/92 (89%)
Query: 3 SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62
SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI GD+GV
Sbjct: 43 SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
Query: 63 TITGPFKHFVGMLPEKDCRCALYDASFETKES 94
+ITGPFKHFVGMLPEKDC ALYDASFETK+S
Sbjct: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKS 134
>gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]
Length = 166
Score = 144 bits (364), Expect = 1e-35
Identities = 70/101 (69%), Positives = 84/101 (83%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
MASGV V+D V ++F DMKVRK STPEE+KKRKKAV+FCL D+K II+EEGKEILVGDV
Sbjct: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
Query: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIF 101
G T+ P+ FV MLP+KDCR ALYDA++ETKES E+L+F
Sbjct: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVF 101
>gi|14719392 cofilin 2 [Homo sapiens]
Length = 166
Score = 134 bits (337), Expect = 2e-32
Identities = 66/101 (65%), Positives = 80/101 (79%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
MASGV V DEV ++F DMKVRK ST EEIKKRKKAV+FCL D++ IIVEE K+ILVGD+
Sbjct: 1 MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDI 60
Query: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIF 101
G T+ P+ FV +LP DCR ALYDA++ETKES E+L+F
Sbjct: 61 GDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVF 101
>gi|33946278 cofilin 2 [Homo sapiens]
Length = 166
Score = 134 bits (337), Expect = 2e-32
Identities = 66/101 (65%), Positives = 80/101 (79%)
Query: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
MASGV V DEV ++F DMKVRK ST EEIKKRKKAV+FCL D++ IIVEE K+ILVGD+
Sbjct: 1 MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDI 60
Query: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIF 101
G T+ P+ FV +LP DCR ALYDA++ETKES E+L+F
Sbjct: 61 GDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVF 101
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 25 TPEEIKK---RKKAVIFCLGADEKCII 48
TPEE++K RK +I G+DE+C I
Sbjct: 736 TPEELRKKLIRKMKLILSSGSDEECAI 762
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 25 TPEEIKK---RKKAVIFCLGADEKCII 48
TPEE++K RK +I G+DE+C I
Sbjct: 736 TPEELRKKLIRKMKLILSSGSDEECAI 762
>gi|56121815 ADAM metallopeptidase with thrombospondin type 1 motif,
10 preproprotein [Homo sapiens]
Length = 1103
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 8 ADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCI 47
ADE CR + +K R+C E + ++CL +CI
Sbjct: 475 ADEQCRFQHGVKSRQCKYGEVCSE-----LWCLSKSNRCI 509
>gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens]
Length = 859
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 24 STPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVG 61
S EE+KK+ AV C + E ++ +E++ G G
Sbjct: 628 SVQEELKKKFSAVSLCNISTEVLKVINATEELIAGSTG 665
>gi|33519475 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa
precursor [Homo sapiens]
Length = 727
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 27 EEIKKRKKAVIFCLGADEKCIIVEE-GKEILV------GDVGVTI 64
E I+K V+F LGAD CI ++ K+ + GDVG I
Sbjct: 535 EAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPI 579
>gi|193788629 testis expressed 264 [Homo sapiens]
Length = 313
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 74 MLPEKDCRCALYDASFETKESSTEELI 100
M+P CRCA+ E +ES + ELI
Sbjct: 86 MVPPDKCRCAVGSILSEGEESPSPELI 112
>gi|7706708 testis expressed 264 [Homo sapiens]
Length = 313
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 74 MLPEKDCRCALYDASFETKESSTEELI 100
M+P CRCA+ E +ES + ELI
Sbjct: 86 MVPPDKCRCAVGSILSEGEESPSPELI 112
>gi|64276808 ADAM metallopeptidase with thrombospondin type 1 motif,
6 preproprotein [Homo sapiens]
Length = 1117
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 8 ADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCI 47
ADE CR Y R+C E ++ ++CL +C+
Sbjct: 486 ADEQCRFQYGATSRQCKYGEVCRE-----LWCLSKSNRCV 520
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,909,628
Number of Sequences: 37866
Number of extensions: 147966
Number of successful extensions: 305
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 19
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.