Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239743590

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo
sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754918 PREDICTED: similar to destrin [Homo sapiens]             211   1e-55
gi|239749458 PREDICTED: similar to destrin [Homo sapiens]             211   1e-55
gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo ...   211   1e-55
gi|5802966 destrin isoform a [Homo sapiens]                           195   7e-51
gi|58530848 destrin isoform b [Homo sapiens]                          161   1e-40
gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing...   160   2e-40
gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing...   159   4e-40
gi|113415024 PREDICTED: similar to destrin [Homo sapiens]             159   4e-40
gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]                      144   1e-35
gi|14719392 cofilin 2 [Homo sapiens]                                  134   2e-32
gi|33946278 cofilin 2 [Homo sapiens]                                  134   2e-32
gi|21071052 helicase-like transcription factor [Homo sapiens]          27   3.5  
gi|21071054 helicase-like transcription factor [Homo sapiens]          27   3.5  
gi|56121815 ADAM metallopeptidase with thrombospondin type 1 mot...    27   4.5  
gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens]     26   5.9  
gi|33519475 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kD...    26   7.7  
gi|193788629 testis expressed 264 [Homo sapiens]                       26   7.7  
gi|7706708 testis expressed 264 [Homo sapiens]                         26   7.7  
gi|64276808 ADAM metallopeptidase with thrombospondin type 1 mot...    26   7.7  

>gi|239754918 PREDICTED: similar to destrin [Homo sapiens]
          Length = 103

 Score =  211 bits (537), Expect = 1e-55
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
           MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV
Sbjct: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60

Query: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
           GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL
Sbjct: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103


>gi|239749458 PREDICTED: similar to destrin [Homo sapiens]
          Length = 103

 Score =  211 bits (537), Expect = 1e-55
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
           MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV
Sbjct: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60

Query: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
           GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL
Sbjct: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103


>gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo
           sapiens]
          Length = 103

 Score =  211 bits (537), Expect = 1e-55
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
           MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV
Sbjct: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60

Query: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
           GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL
Sbjct: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103


>gi|5802966 destrin isoform a [Homo sapiens]
          Length = 165

 Score =  195 bits (495), Expect = 7e-51
 Identities = 96/103 (93%), Positives = 98/103 (95%)

Query: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
           MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDV
Sbjct: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60

Query: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIFFL 103
           GVTIT PFKHFVGMLPEKDCR ALYDASFETKES  EEL+FFL
Sbjct: 61  GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFL 103


>gi|58530848 destrin isoform b [Homo sapiens]
          Length = 148

 Score =  161 bits (407), Expect = 1e-40
 Identities = 79/86 (91%), Positives = 81/86 (94%)

Query: 18  MKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGVTITGPFKHFVGMLPE 77
           MKVRKCSTPEEIKKRKKAVIFCL AD+KCIIVEEGKEILVGDVGVTIT PFKHFVGMLPE
Sbjct: 1   MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60

Query: 78  KDCRCALYDASFETKESSTEELIFFL 103
           KDCR ALYDASFETKES  EEL+FFL
Sbjct: 61  KDCRYALYDASFETKESRKEELMFFL 86


>gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing
           factor) [Homo sapiens]
          Length = 252

 Score =  160 bits (406), Expect = 2e-40
 Identities = 78/92 (84%), Positives = 82/92 (89%)

Query: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI  GD+GV
Sbjct: 96  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155

Query: 63  TITGPFKHFVGMLPEKDCRCALYDASFETKES 94
           TITGPFKHFVGMLPEKDC  ALYDASFETK+S
Sbjct: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKS 187


>gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing
           factor) [Homo sapiens]
          Length = 252

 Score =  159 bits (402), Expect = 4e-40
 Identities = 77/92 (83%), Positives = 82/92 (89%)

Query: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI  GD+GV
Sbjct: 96  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155

Query: 63  TITGPFKHFVGMLPEKDCRCALYDASFETKES 94
           +ITGPFKHFVGMLPEKDC  ALYDASFETK+S
Sbjct: 156 SITGPFKHFVGMLPEKDCCYALYDASFETKKS 187


>gi|113415024 PREDICTED: similar to destrin [Homo sapiens]
          Length = 199

 Score =  159 bits (402), Expect = 4e-40
 Identities = 77/92 (83%), Positives = 82/92 (89%)

Query: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI  GD+GV
Sbjct: 43  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102

Query: 63  TITGPFKHFVGMLPEKDCRCALYDASFETKES 94
           +ITGPFKHFVGMLPEKDC  ALYDASFETK+S
Sbjct: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKS 134


>gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]
          Length = 166

 Score =  144 bits (364), Expect = 1e-35
 Identities = 70/101 (69%), Positives = 84/101 (83%)

Query: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
           MASGV V+D V ++F DMKVRK STPEE+KKRKKAV+FCL  D+K II+EEGKEILVGDV
Sbjct: 1   MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60

Query: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIF 101
           G T+  P+  FV MLP+KDCR ALYDA++ETKES  E+L+F
Sbjct: 61  GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVF 101


>gi|14719392 cofilin 2 [Homo sapiens]
          Length = 166

 Score =  134 bits (337), Expect = 2e-32
 Identities = 66/101 (65%), Positives = 80/101 (79%)

Query: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
           MASGV V DEV ++F DMKVRK ST EEIKKRKKAV+FCL  D++ IIVEE K+ILVGD+
Sbjct: 1   MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDI 60

Query: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIF 101
           G T+  P+  FV +LP  DCR ALYDA++ETKES  E+L+F
Sbjct: 61  GDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVF 101


>gi|33946278 cofilin 2 [Homo sapiens]
          Length = 166

 Score =  134 bits (337), Expect = 2e-32
 Identities = 66/101 (65%), Positives = 80/101 (79%)

Query: 1   MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
           MASGV V DEV ++F DMKVRK ST EEIKKRKKAV+FCL  D++ IIVEE K+ILVGD+
Sbjct: 1   MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDI 60

Query: 61  GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIF 101
           G T+  P+  FV +LP  DCR ALYDA++ETKES  E+L+F
Sbjct: 61  GDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVF 101


>gi|21071052 helicase-like transcription factor [Homo sapiens]
          Length = 1009

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)

Query: 25  TPEEIKK---RKKAVIFCLGADEKCII 48
           TPEE++K   RK  +I   G+DE+C I
Sbjct: 736 TPEELRKKLIRKMKLILSSGSDEECAI 762


>gi|21071054 helicase-like transcription factor [Homo sapiens]
          Length = 1009

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)

Query: 25  TPEEIKK---RKKAVIFCLGADEKCII 48
           TPEE++K   RK  +I   G+DE+C I
Sbjct: 736 TPEELRKKLIRKMKLILSSGSDEECAI 762


>gi|56121815 ADAM metallopeptidase with thrombospondin type 1 motif,
           10 preproprotein [Homo sapiens]
          Length = 1103

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 8   ADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCI 47
           ADE CR  + +K R+C   E   +     ++CL    +CI
Sbjct: 475 ADEQCRFQHGVKSRQCKYGEVCSE-----LWCLSKSNRCI 509


>gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens]
          Length = 859

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 24  STPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVG 61
           S  EE+KK+  AV  C  + E   ++   +E++ G  G
Sbjct: 628 SVQEELKKKFSAVSLCNISTEVLKVINATEELIAGSTG 665


>gi|33519475 NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa
           precursor [Homo sapiens]
          Length = 727

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 7/45 (15%)

Query: 27  EEIKKRKKAVIFCLGADEKCIIVEE-GKEILV------GDVGVTI 64
           E I+K    V+F LGAD  CI  ++  K+  +      GDVG  I
Sbjct: 535 EAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPI 579


>gi|193788629 testis expressed 264 [Homo sapiens]
          Length = 313

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 74  MLPEKDCRCALYDASFETKESSTEELI 100
           M+P   CRCA+     E +ES + ELI
Sbjct: 86  MVPPDKCRCAVGSILSEGEESPSPELI 112


>gi|7706708 testis expressed 264 [Homo sapiens]
          Length = 313

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 74  MLPEKDCRCALYDASFETKESSTEELI 100
           M+P   CRCA+     E +ES + ELI
Sbjct: 86  MVPPDKCRCAVGSILSEGEESPSPELI 112


>gi|64276808 ADAM metallopeptidase with thrombospondin type 1 motif,
           6 preproprotein [Homo sapiens]
          Length = 1117

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 8   ADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCI 47
           ADE CR  Y    R+C   E  ++     ++CL    +C+
Sbjct: 486 ADEQCRFQYGATSRQCKYGEVCRE-----LWCLSKSNRCV 520


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,909,628
Number of Sequences: 37866
Number of extensions: 147966
Number of successful extensions: 305
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 19
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press