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Search of human proteins with 239743523
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743523 PREDICTED: hypothetical protein XP_002342881 [Homo
sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754849 PREDICTED: hypothetical protein [Homo sapiens] 249 3e-67
gi|239749388 PREDICTED: hypothetical protein [Homo sapiens] 249 3e-67
gi|239743523 PREDICTED: hypothetical protein XP_002342881 [Homo ... 249 3e-67
gi|55770876 notch4 preproprotein [Homo sapiens] 29 0.92
gi|51173722 bromodomain and PHD finger-containing protein 1 isof... 28 1.6
gi|51173720 bromodomain and PHD finger-containing protein 1 isof... 28 1.6
gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens] 27 2.7
gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens] 27 2.7
gi|53831989 tweety 1 isoform 2 [Homo sapiens] 27 2.7
gi|10257437 tweety 1 isoform 1 [Homo sapiens] 27 2.7
gi|113722133 senataxin [Homo sapiens] 27 3.5
gi|37700254 triggering receptor expressed on myeloid cells-like ... 27 3.5
gi|18252045 ADAM metallopeptidase domain 33 isoform alpha prepro... 27 4.6
gi|24041040 ADAM metallopeptidase domain 33 isoform beta preprop... 27 4.6
gi|197276661 paired box 1 [Homo sapiens] 27 4.6
gi|169209613 PREDICTED: hypothetical protein LOC100128785 [Homo ... 27 4.6
gi|169210642 PREDICTED: hypothetical protein LOC100128785 [Homo ... 27 4.6
gi|169210176 PREDICTED: hypothetical protein LOC100128785 [Homo ... 27 4.6
gi|169177385 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|148277018 selenoprotein P isoform 1 precursor [Homo sapiens] 27 4.6
gi|148277022 selenoprotein P isoform 2 [Homo sapiens] 27 4.6
gi|62530391 selenoprotein P isoform 1 precursor [Homo sapiens] 27 4.6
gi|48255955 plasma membrane calcium ATPase 3 isoform 3b [Homo sa... 27 4.6
gi|48255953 plasma membrane calcium ATPase 3 isoform 3a [Homo sa... 27 4.6
gi|146262007 forkhead box D4-like 6 [Homo sapiens] 27 4.6
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 26 6.0
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 26 6.0
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 26 6.0
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
>gi|239754849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 249 bits (636), Expect = 3e-67
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MRMVRVPAPHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST 60
MRMVRVPAPHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST
Sbjct: 1 MRMVRVPAPHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST 60
Query: 61 RWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACAVPPLPLTSGPAQAT 113
RWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACAVPPLPLTSGPAQAT
Sbjct: 61 RWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACAVPPLPLTSGPAQAT 113
>gi|239749388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 249 bits (636), Expect = 3e-67
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MRMVRVPAPHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST 60
MRMVRVPAPHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST
Sbjct: 1 MRMVRVPAPHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST 60
Query: 61 RWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACAVPPLPLTSGPAQAT 113
RWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACAVPPLPLTSGPAQAT
Sbjct: 61 RWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACAVPPLPLTSGPAQAT 113
>gi|239743523 PREDICTED: hypothetical protein XP_002342881 [Homo
sapiens]
Length = 113
Score = 249 bits (636), Expect = 3e-67
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MRMVRVPAPHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST 60
MRMVRVPAPHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST
Sbjct: 1 MRMVRVPAPHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST 60
Query: 61 RWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACAVPPLPLTSGPAQAT 113
RWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACAVPPLPLTSGPAQAT
Sbjct: 61 RWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACAVPPLPLTSGPAQAT 113
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 28.9 bits (63), Expect = 0.92
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 7 PAPHFSHC-----HYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQL-LLLLCRGGG 57
P P SHC +HC C W P NL P + + S + + LC GG
Sbjct: 852 PCPRNSHCLQTGPSFHCLCLQGWTGPLCNL---PLSSCQKAALSQGIDVSSLCHNGG 905
>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform
2 [Homo sapiens]
Length = 1214
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 53 CRGGGGSTRWDDIVGQLAGLRQQQDRLRHSGSNTTS-RVRRPLFCACAVPP 102
C T + Q AGL + + +R +G+N TS VR+ +C PP
Sbjct: 400 CHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPP 450
>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform
1 [Homo sapiens]
Length = 1220
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 53 CRGGGGSTRWDDIVGQLAGLRQQQDRLRHSGSNTTS-RVRRPLFCACAVPP 102
C T + Q AGL + + +R +G+N TS VR+ +C PP
Sbjct: 400 CHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPP 450
>gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens]
Length = 203
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 31 LLDKPAGGGRDCSFSSQLLLLLCR 54
LL AGG DCSF +LL CR
Sbjct: 100 LLGTMAGGAADCSFWERLLARQCR 123
>gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens]
Length = 263
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 31 LLDKPAGGGRDCSFSSQLLLLLCR 54
LL AGG DCSF +LL CR
Sbjct: 100 LLGTMAGGAADCSFWERLLARQCR 123
>gi|53831989 tweety 1 isoform 2 [Homo sapiens]
Length = 460
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 20 CCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLL--CRGGG----GSTRWDDIVGQLA 70
CCC PP + + P GG C S ++ LL C G G G++ D V QL+
Sbjct: 70 CCCRPPEPPGSKIPSPGGG---CVTWSCIVALLAGCTGIGIGFYGNSETSDGVSQLS 123
>gi|10257437 tweety 1 isoform 1 [Homo sapiens]
Length = 450
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 20 CCCSWVAPPRNLLDKPAGGGRDCSFSSQLLLLL--CRGGG----GSTRWDDIVGQLA 70
CCC PP + + P GG C S ++ LL C G G G++ D V QL+
Sbjct: 70 CCCRPPEPPGSKIPSPGGG---CVTWSCIVALLAGCTGIGIGFYGNSETSDGVSQLS 123
>gi|113722133 senataxin [Homo sapiens]
Length = 2677
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 50 LLLCRGGGGSTRWDDIVGQLAGLRQQQDRLRHSGSNTTSRVRRPLFCACA 99
+ L G G+ + IVG L L + R HS N+ +++++ CA
Sbjct: 1958 ICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCA 2007
>gi|37700254 triggering receptor expressed on myeloid cells-like 4
[Homo sapiens]
Length = 200
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 12/43 (27%)
Query: 14 CHYHCHCCCSWV--APPRNLLDKPAGGGRDCSFSSQLLLLLCR 54
C +H CCCSW A P L P Q LLL C+
Sbjct: 9 CCFHLCCCCSWPQGAVPEELHKHP----------GQTLLLQCQ 41
>gi|18252045 ADAM metallopeptidase domain 33 isoform alpha
preproprotein [Homo sapiens]
Length = 813
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 15 HYHCHCCCSWVAPPRNLLDKPAGGG 39
+++CHC W APP DKP GG
Sbjct: 666 NHNCHCAPGW-APP--FCDKPGFGG 687
>gi|24041040 ADAM metallopeptidase domain 33 isoform beta
preproprotein [Homo sapiens]
Length = 787
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 15 HYHCHCCCSWVAPPRNLLDKPAGGG 39
+++CHC W APP DKP GG
Sbjct: 640 NHNCHCAPGW-APP--FCDKPGFGG 661
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 32 LDKPAGGGRDCSFSSQLLLLLCRGGGGSTRWDDIVGQLAG 71
+ P G R S L L L RGGGG+ D G G
Sbjct: 40 VSSPRLGRRGSRLSGALPLCLSRGGGGAQALPDCAGPSPG 79
>gi|169209613 PREDICTED: hypothetical protein LOC100128785 [Homo
sapiens]
Length = 639
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 3 MVRVPAPHFSHCHYHCHCCCSWV-APPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST 60
+ R P H H C C+W+ AP N + G S +LL LL GGS+
Sbjct: 493 LCRPPGVHGHHAATPRSCSCAWLPAPSLNFISFETGH----SLCPELLPLLVHQLGGSS 547
>gi|169210642 PREDICTED: hypothetical protein LOC100128785 [Homo
sapiens]
Length = 639
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 3 MVRVPAPHFSHCHYHCHCCCSWV-APPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST 60
+ R P H H C C+W+ AP N + G S +LL LL GGS+
Sbjct: 493 LCRPPGVHGHHAATPRSCSCAWLPAPSLNFISFETGH----SLCPELLPLLVHQLGGSS 547
>gi|169210176 PREDICTED: hypothetical protein LOC100128785 [Homo
sapiens]
Length = 639
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 3 MVRVPAPHFSHCHYHCHCCCSWV-APPRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGST 60
+ R P H H C C+W+ AP N + G S +LL LL GGS+
Sbjct: 493 LCRPPGVHGHHAATPRSCSCAWLPAPSLNFISFETGH----SLCPELLPLLVHQLGGSS 547
>gi|169177385 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 9 PHFSHCHYHCHCCCSWVAPPRNLLDKPAGGGRDCSFSSQL------LLLLCRGGGGSTRW 62
PHF H C C R+ L + GGG S S + L + G GG+ R
Sbjct: 29 PHFPHLGTRARCPCGCGQARRSALQQLHGGGNRPSALSPVAAEGPWLEVSSSGIGGAGRG 88
Query: 63 DDIVGQLA 70
+ G A
Sbjct: 89 QGLAGSQA 96
>gi|148277018 selenoprotein P isoform 1 precursor [Homo sapiens]
Length = 381
Score = 26.6 bits (57), Expect = 4.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 2 RMVRVPAPHFSHCHYHCH 19
+ V P+PH+ H H+H H
Sbjct: 196 KTVETPSPHYHHEHHHNH 213
>gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
Length = 411
Score = 26.6 bits (57), Expect = 4.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 2 RMVRVPAPHFSHCHYHCH 19
+ V P+PH+ H H+H H
Sbjct: 226 KTVETPSPHYHHEHHHNH 243
>gi|62530391 selenoprotein P isoform 1 precursor [Homo sapiens]
Length = 381
Score = 26.6 bits (57), Expect = 4.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 2 RMVRVPAPHFSHCHYHCH 19
+ V P+PH+ H H+H H
Sbjct: 196 KTVETPSPHYHHEHHHNH 213
>gi|48255955 plasma membrane calcium ATPase 3 isoform 3b [Homo
sapiens]
Length = 1220
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 28 PRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGSTRWDDIVGQLAGL--RQQQDRLRHSGSN 85
P+ D P GG C+ + L+ RG + ++ G ++GL R + N
Sbjct: 15 PQQQRDVPQAGGFGCTLAELRTLMELRGAEALQKIEEAYGDVSGLCRRLKTSPTEGLADN 74
Query: 86 TTS-RVRRPLFCACAVPP 102
T RR ++ +PP
Sbjct: 75 TNDLEKRRQIYGQNFIPP 92
>gi|48255953 plasma membrane calcium ATPase 3 isoform 3a [Homo
sapiens]
Length = 1173
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 28 PRNLLDKPAGGGRDCSFSSQLLLLLCRGGGGSTRWDDIVGQLAGL--RQQQDRLRHSGSN 85
P+ D P GG C+ + L+ RG + ++ G ++GL R + N
Sbjct: 15 PQQQRDVPQAGGFGCTLAELRTLMELRGAEALQKIEEAYGDVSGLCRRLKTSPTEGLADN 74
Query: 86 TTS-RVRRPLFCACAVPP 102
T RR ++ +PP
Sbjct: 75 TNDLEKRRQIYGQNFIPP 92
>gi|146262007 forkhead box D4-like 6 [Homo sapiens]
Length = 417
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 40 RDCSFSSQLLLLLCRGGGGSTRWDDIVGQLAGLRQQQDRLRHSGSNTTSR-----VRRPL 94
R+ S L +LC+G G ++ GLR+ R R + + +S + RPL
Sbjct: 318 READASLSALRVLCKGSGE---------RVQGLRRVCPRPRGATATCSSDHQACCIPRPL 368
Query: 95 FCACAVPPLPL 105
C PP PL
Sbjct: 369 PLCCKCPPPPL 379
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 18 CHCCCSWVAPPRNLLDKPAGGGRDCS 43
C CC W AP +L D+PA G S
Sbjct: 440 CCACCCW-APRSDLKDRPARDGATVS 464
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 18 CHCCCSWVAPPRNLLDKPAGGGRDCS 43
C CC W AP +L D+PA G S
Sbjct: 440 CCACCCW-APRSDLKDRPARDGATVS 464
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 18 CHCCCSWVAPPRNLLDKPAGGGRDCS 43
C CC W AP +L D+PA G S
Sbjct: 354 CCACCCW-APRSDLKDRPARDGATVS 378
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 33 DKPAGGGRDCSFSSQLLLLLCRGGGGSTRWDDIVG-QLAGLRQQQDRLR 80
D+PA GGR S + + GGGGS + G + LR Q LR
Sbjct: 420 DRPAAGGRRAGQHSPRVQVGLLGGGGSDHGGLLFGAAVVVLRGQHGHLR 468
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 33 DKPAGGGRDCSFSSQLLLLLCRGGGGSTRWDDIVG-QLAGLRQQQDRLR 80
D+PA GGR S + + GGGGS + G + LR Q LR
Sbjct: 420 DRPAAGGRRAGQHSPRVQVGLLGGGGSDHGGLLFGAAVVVLRGQHGHLR 468
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,506,885
Number of Sequences: 37866
Number of extensions: 250137
Number of successful extensions: 966
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 44
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.