Guide to the Human Genome
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Search of human proteins with 239743486

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo
sapiens]
         (226 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]          469   e-132
gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]          469   e-132
gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo sap...   469   e-132
gi|223890243 ribosomal protein L10 [Homo sapiens]                     130   7e-31
gi|18152783 ribosomal protein L10-like protein [Homo sapiens]         126   1e-29
gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens]          113   2e-25
gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens]          113   2e-25
gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo sap...   113   2e-25
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa...   108   5e-24
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ...   108   5e-24
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ...   108   5e-24
gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens]           84   7e-17
gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo ...    84   7e-17
gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo ...    84   7e-17
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]                 29   2.9  
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]                 29   2.9  
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]                 29   2.9  
gi|110347431 latent transforming growth factor beta binding prot...    29   2.9  
gi|51593090 mucin 13, epithelial transmembrane [Homo sapiens]          29   3.7  
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]            28   4.9  
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]            28   4.9  
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ...    28   4.9  
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]            28   4.9  
gi|150170725 zinc and ring finger 4 [Homo sapiens]                     28   6.4  
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho...    28   8.3  
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho...    28   8.3  
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho...    28   8.3  
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom...    28   8.3  
gi|239747259 PREDICTED: hypothetical protein [Homo sapiens]            28   8.3  
gi|31377634 guanylate binding protein 4 [Homo sapiens]                 28   8.3  

>gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]
          Length = 226

 Score =  469 bits (1206), Expect = e-132
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60
           MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH
Sbjct: 1   MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60

Query: 61  VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120
           VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT
Sbjct: 61  VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120

Query: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180
           SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME
Sbjct: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180

Query: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226
           MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV
Sbjct: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226


>gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]
          Length = 226

 Score =  469 bits (1206), Expect = e-132
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60
           MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH
Sbjct: 1   MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60

Query: 61  VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120
           VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT
Sbjct: 61  VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120

Query: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180
           SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME
Sbjct: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180

Query: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226
           MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV
Sbjct: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226


>gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo
           sapiens]
          Length = 226

 Score =  469 bits (1206), Expect = e-132
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60
           MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH
Sbjct: 1   MQRGGGPNGNLCHSVYENVCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEH 60

Query: 61  VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120
           VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT
Sbjct: 61  VIEALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAEKQLIPITVGSSIPPIVTLRT 120

Query: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180
           SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME
Sbjct: 121 SGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLPYQRPLMME 180

Query: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226
           MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV
Sbjct: 181 MLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAICVHVTHEEV 226


>gi|223890243 ribosomal protein L10 [Homo sapiens]
          Length = 214

 Score =  130 bits (328), Expect = 7e-31
 Identities = 65/87 (74%), Positives = 71/87 (81%)

Query: 28  IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
           +RGAF KPQG VARVHIGQVIMSI TKLQNKEHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFT 174

Query: 88  KFSVDEFEDMMAEKQLIPITVGSSIPP 114
           KF+ DEFEDM+AEK+LIP   G    P
Sbjct: 175 KFNADEFEDMVAEKRLIPDGCGVKYIP 201


>gi|18152783 ribosomal protein L10-like protein [Homo sapiens]
          Length = 214

 Score =  126 bits (317), Expect = 1e-29
 Identities = 63/87 (72%), Positives = 70/87 (80%)

Query: 28  IRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFT 87
           +RGAF KPQG VARVHIGQVIMSI TKLQN+EHVIEAL +A FKFPGRQ IH S+KW FT
Sbjct: 115 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFT 174

Query: 88  KFSVDEFEDMMAEKQLIPITVGSSIPP 114
           KF+ DEFEDM+A+K LIP   G    P
Sbjct: 175 KFNADEFEDMVAKKCLIPDGCGVKYVP 201


>gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens]
          Length = 150

 Score =  113 bits (282), Expect = 2e-25
 Identities = 60/96 (62%), Positives = 69/96 (71%), Gaps = 3/96 (3%)

Query: 19  VCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNI 78
           VC ++    +  AF KPQG VARVHIGQVIM I TKLQNKEHVI AL +  FKFPG Q +
Sbjct: 44  VCRLQTGMQV--AFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKV 101

Query: 79  HFSEKWDFTKFSVDEFEDMMAEKQLIPITVG-SSIP 113
           H S+KW FTKF+ DEFE ++AEKQL P   G  SIP
Sbjct: 102 HISKKWGFTKFNADEFEYVVAEKQLSPDGCGVKSIP 137


>gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens]
          Length = 150

 Score =  113 bits (282), Expect = 2e-25
 Identities = 60/96 (62%), Positives = 69/96 (71%), Gaps = 3/96 (3%)

Query: 19  VCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNI 78
           VC ++    +  AF KPQG VARVHIGQVIM I TKLQNKEHVI AL +  FKFPG Q +
Sbjct: 44  VCRLQTGMQV--AFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKV 101

Query: 79  HFSEKWDFTKFSVDEFEDMMAEKQLIPITVG-SSIP 113
           H S+KW FTKF+ DEFE ++AEKQL P   G  SIP
Sbjct: 102 HISKKWGFTKFNADEFEYVVAEKQLSPDGCGVKSIP 137


>gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo
           sapiens]
          Length = 150

 Score =  113 bits (282), Expect = 2e-25
 Identities = 60/96 (62%), Positives = 69/96 (71%), Gaps = 3/96 (3%)

Query: 19  VCSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNI 78
           VC ++    +  AF KPQG VARVHIGQVIM I TKLQNKEHVI AL +  FKFPG Q +
Sbjct: 44  VCRLQTGMQV--AFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKV 101

Query: 79  HFSEKWDFTKFSVDEFEDMMAEKQLIPITVG-SSIP 113
           H S+KW FTKF+ DEFE ++AEKQL P   G  SIP
Sbjct: 102 HISKKWGFTKFNADEFEYVVAEKQLSPDGCGVKSIP 137


>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
           sapiens]
          Length = 281

 Score =  108 bits (269), Expect = 5e-24
 Identities = 54/74 (72%), Positives = 59/74 (79%), Gaps = 3/74 (4%)

Query: 20  CSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIH 79
           C +E    I+GAF KPQG VARVHIGQV  SICTKLQNKEHVIEA C+A FKFPG Q IH
Sbjct: 211 CRLET--GIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIH 267

Query: 80  FSEKWDFTKFSVDE 93
            S+KW FTKF+VDE
Sbjct: 268 ISKKWGFTKFNVDE 281


>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
           sapiens]
          Length = 158

 Score =  108 bits (269), Expect = 5e-24
 Identities = 54/74 (72%), Positives = 59/74 (79%), Gaps = 3/74 (4%)

Query: 20  CSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIH 79
           C +E    I+GAF KPQG VARVHIGQV  SICTKLQNKEHVIEA C+A FKFPG Q IH
Sbjct: 88  CRLET--GIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIH 144

Query: 80  FSEKWDFTKFSVDE 93
            S+KW FTKF+VDE
Sbjct: 145 ISKKWGFTKFNVDE 158


>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
           sapiens]
          Length = 158

 Score =  108 bits (269), Expect = 5e-24
 Identities = 54/74 (72%), Positives = 59/74 (79%), Gaps = 3/74 (4%)

Query: 20  CSMENVASIRGAFEKPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIH 79
           C +E    I+GAF KPQG VARVHIGQV  SICTKLQNKEHVIEA C+A FKFPG Q IH
Sbjct: 88  CRLET--GIQGAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIH 144

Query: 80  FSEKWDFTKFSVDE 93
            S+KW FTKF+VDE
Sbjct: 145 ISKKWGFTKFNVDE 158


>gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens]
          Length = 186

 Score = 84.3 bits (207), Expect = 7e-17
 Identities = 42/59 (71%), Positives = 46/59 (77%)

Query: 34  KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
           KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK  G Q I  S+KW FTKF VD
Sbjct: 128 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 186


>gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo
           sapiens]
          Length = 180

 Score = 84.3 bits (207), Expect = 7e-17
 Identities = 42/59 (71%), Positives = 46/59 (77%)

Query: 34  KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
           KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK  G Q I  S+KW FTKF VD
Sbjct: 122 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 180


>gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo
           sapiens]
          Length = 186

 Score = 84.3 bits (207), Expect = 7e-17
 Identities = 42/59 (71%), Positives = 46/59 (77%)

Query: 34  KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
           KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK  G Q I  S+KW FTKF VD
Sbjct: 128 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 186


>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
          Length = 548

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 50  SICTKLQNKEHVIEALCKANFKFPGR-QNIHFSEKWDFTKFSVDEFEDMMAE--KQLIPI 106
           ++CTK     H+    CK  F+ PG  Q+     + D       E+  +MAE  +  +P 
Sbjct: 277 TVCTKCGGAGHIASD-CK--FQRPGDPQSAQDKARMD------KEYLSLMAELGEAPVPA 327

Query: 107 TVGSSIPPIVTLRTSGTRRAEELARPRPPT 136
           +VGS+  P  T   S  R A     P PP+
Sbjct: 328 SVGSTSGPATTPLASAPRPAAPANNPPPPS 357


>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
          Length = 638

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 50  SICTKLQNKEHVIEALCKANFKFPGR-QNIHFSEKWDFTKFSVDEFEDMMAE--KQLIPI 106
           ++CTK     H+    CK  F+ PG  Q+     + D       E+  +MAE  +  +P 
Sbjct: 277 TVCTKCGGAGHIASD-CK--FQRPGDPQSAQDKARMD------KEYLSLMAELGEAPVPA 327

Query: 107 TVGSSIPPIVTLRTSGTRRAEELARPRPPT 136
           +VGS+  P  T   S  R A     P PP+
Sbjct: 328 SVGSTSGPATTPLASAPRPAAPANNPPPPS 357


>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
          Length = 639

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 50  SICTKLQNKEHVIEALCKANFKFPGR-QNIHFSEKWDFTKFSVDEFEDMMAE--KQLIPI 106
           ++CTK     H+    CK  F+ PG  Q+     + D       E+  +MAE  +  +P 
Sbjct: 277 TVCTKCGGAGHIASD-CK--FQRPGDPQSAQDKARMD------KEYLSLMAELGEAPVPA 327

Query: 107 TVGSSIPPIVTLRTSGTRRAEELARPRPPT 136
           +VGS+  P  T   S  R A     P PP+
Sbjct: 328 SVGSTSGPATTPLASAPRPAAPANNPPPPS 357


>gi|110347431 latent transforming growth factor beta binding protein
           4 isoform a [Homo sapiens]
          Length = 1624

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 174 QRPLMMEMLWPVYRECTEDFRSSASPSDVRRLKTPHSDYANAAIC 218
           +RPL++ +L P++   T     S SPS V  +    S  A+ A+C
Sbjct: 9   RRPLLLVLLLPLFAAATSAASPSPSPSQVVEVPGVPSRPASVAVC 53


>gi|51593090 mucin 13, epithelial transmembrane [Homo sapiens]
          Length = 511

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 50  SICTKLQNKEHVI--------EALCKANFKFPGRQNIHFSEKWDFTKFSVDEFEDMMAE- 100
           S+C KL N    +         + CK    FPG+ ++  SE +D  +     ++D+ +E 
Sbjct: 185 SLCVKLHNTSFCLCLEGYYYNSSTCKKGKVFPGKISVTVSETFDPEEKHSMAYQDLHSEI 244

Query: 101 KQLIPITVGSSI---PPIVTLRTSGTRRAE 127
             L     G+S+     I+T+ TS + R+E
Sbjct: 245 TSLFKDVFGTSVYGQTVILTVSTSLSPRSE 274


>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 556

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 120 TSGTRRAEELARPRPPTSPWKAQASC 145
           + G  RA+ LARP  PT   K Q SC
Sbjct: 273 SGGHHRAQRLARPARPTEIMKLQISC 298


>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 884

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 120 TSGTRRAEELARPRPPTSPWKAQASC 145
           + G  RA+ LARP  PT   K Q SC
Sbjct: 601 SGGHHRAQRLARPARPTEIMKLQISC 626


>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
           sapiens]
          Length = 884

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 120 TSGTRRAEELARPRPPTSPWKAQASC 145
           + G  RA+ LARP  PT   K Q SC
Sbjct: 601 SGGHHRAQRLARPARPTEIMKLQISC 626


>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 884

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 120 TSGTRRAEELARPRPPTSPWKAQASC 145
           + G  RA+ LARP  PT   K Q SC
Sbjct: 601 SGGHHRAQRLARPARPTEIMKLQISC 626


>gi|150170725 zinc and ring finger 4 [Homo sapiens]
          Length = 429

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 138 PWKAQA---SCALQRPSRAQGQDSFDMTARQF--HNAYLPYQRP 176
           PW +QA   SC + + S A  +DSFD T   F   +  LP  RP
Sbjct: 338 PWFSQAPRRSCPVCKQSVAATEDSFDSTTYSFRDEDPSLPGHRP 381


>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 113 PPIVTLRTSGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLP 172
           PP+ +  ++ + RA   + P PP  P     + ALQ P+         +     H A  P
Sbjct: 329 PPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPP 388

Query: 173 YQRPLM 178
              PL+
Sbjct: 389 IAPPLV 394


>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 113 PPIVTLRTSGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLP 172
           PP+ +  ++ + RA   + P PP  P     + ALQ P+         +     H A  P
Sbjct: 329 PPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPP 388

Query: 173 YQRPLM 178
              PL+
Sbjct: 389 IAPPLV 394


>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 113 PPIVTLRTSGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLP 172
           PP+ +  ++ + RA   + P PP  P     + ALQ P+         +     H A  P
Sbjct: 329 PPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPP 388

Query: 173 YQRPLM 178
              PL+
Sbjct: 389 IAPPLV 394


>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
           sapiens]
          Length = 559

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 113 PPIVTLRTSGTRRAEELARPRPPTSPWKAQASCALQRPSRAQGQDSFDMTARQFHNAYLP 172
           PP+ +  ++ + RA   + P PP  P     + ALQ P+         +     H A  P
Sbjct: 329 PPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPP 388

Query: 173 YQRPLM 178
              PL+
Sbjct: 389 IAPPLV 394


>gi|239747259 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 176

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 108 VGSSIPPIVTLRTSGTRRAEELARPRPPTSPWK 140
           +GS + P V LR  G+ R +   RP P T P K
Sbjct: 1   MGSGLHPWVVLRPEGSARLQGHFRPPPKTIPAK 33


>gi|31377634 guanylate binding protein 4 [Homo sapiens]
          Length = 640

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 59  EHVIEALCKANFKFPGRQNIHFSEK----WDF 86
           EH+ E++ +  F  PG  N++  EK    WD+
Sbjct: 430 EHLTESILRGIFSVPGGHNLYLEEKKQVEWDY 461


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,572,199
Number of Sequences: 37866
Number of extensions: 410449
Number of successful extensions: 1232
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 30
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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