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Search of human proteins with 239743240
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743240 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
(109 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754618 PREDICTED: hypothetical protein isoform 1 [Homo sap... 229 5e-61
gi|239754616 PREDICTED: hypothetical protein isoform 2 [Homo sap... 229 5e-61
gi|239749171 PREDICTED: hypothetical protein isoform 1 [Homo sap... 229 5e-61
gi|239749169 PREDICTED: hypothetical protein isoform 2 [Homo sap... 229 5e-61
gi|239743240 PREDICTED: hypothetical protein isoform 1 [Homo sap... 229 5e-61
gi|239743238 PREDICTED: hypothetical protein isoform 2 [Homo sap... 229 5e-61
gi|239508915 PREDICTED: hypothetical protein isoform 1 [Homo sap... 229 5e-61
gi|239508913 PREDICTED: hypothetical protein isoform 2 [Homo sap... 229 5e-61
gi|4504165 gelsolin isoform a precursor [Homo sapiens] 30 0.32
gi|8567388 period 3 [Homo sapiens] 28 1.2
gi|148727298 keratin associated protein 10-6 [Homo sapiens] 28 1.6
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 28 1.6
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 28 2.1
gi|190610006 zinc finger protein 671 [Homo sapiens] 27 4.6
gi|32140182 keratin associated protein 10-10 [Homo sapiens] 27 4.6
gi|154426324 hypothetical protein LOC55049 isoform 1 [Homo sapiens] 26 6.0
gi|4826876 osteomodulin [Homo sapiens] 26 6.0
gi|154426266 hypothetical protein LOC55049 isoform 2 [Homo sapiens] 26 6.0
>gi|239754618 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 109
Score = 229 bits (583), Expect = 5e-61
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH
Sbjct: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
Query: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP
Sbjct: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
>gi|239754616 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 164
Score = 229 bits (583), Expect = 5e-61
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH
Sbjct: 56 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 115
Query: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP
Sbjct: 116 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 164
>gi|239749171 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 109
Score = 229 bits (583), Expect = 5e-61
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH
Sbjct: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
Query: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP
Sbjct: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
>gi|239749169 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 164
Score = 229 bits (583), Expect = 5e-61
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH
Sbjct: 56 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 115
Query: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP
Sbjct: 116 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 164
>gi|239743240 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 109
Score = 229 bits (583), Expect = 5e-61
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH
Sbjct: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
Query: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP
Sbjct: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
>gi|239743238 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 164
Score = 229 bits (583), Expect = 5e-61
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH
Sbjct: 56 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 115
Query: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP
Sbjct: 116 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 164
>gi|239508915 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 109
Score = 229 bits (583), Expect = 5e-61
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH
Sbjct: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
Query: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP
Sbjct: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
>gi|239508913 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 164
Score = 229 bits (583), Expect = 5e-61
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 60
MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH
Sbjct: 56 MMLMMTRARAACRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRH 115
Query: 61 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 109
MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP
Sbjct: 116 MGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIRLWGP 164
>gi|4504165 gelsolin isoform a precursor [Homo sapiens]
Length = 782
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 39 HRPSQ-MVCEVTMLL-----PMKAVTRHMGSAQHSMTASQPRTASAMPITCSPMEAIVQR 92
HRP+ ++C +++ L P++A T G++Q A Q R A P + +V+
Sbjct: 4 HRPAPALLCALSLALCALSLPVRAATASRGASQAG--APQGRVPEARPNSM-----VVEH 56
Query: 93 PRELRTWKAEGIRLW 107
P L+ K G+++W
Sbjct: 57 PEFLKAGKEPGLQIW 71
>gi|8567388 period 3 [Homo sapiens]
Length = 1201
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 29 WPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRHMGSAQHSMTASQPRTASAMPITCSPMEA 88
+P L T + P VC +L P +G+ S A P +SAM T P +
Sbjct: 841 FPYLDTFMTVFLPDPPVCP--LLSPSFLPCPFLGATASS--AISPSMSSAMSPTLDPPPS 896
Query: 89 IVQRPRELRTWKAE 102
+ + RE W+A+
Sbjct: 897 VTSQRREEEKWEAQ 910
>gi|148727298 keratin associated protein 10-6 [Homo sapiens]
Length = 365
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 15 CGSASSESYTLHCIWPVLCTTQFIHRPSQM------VCEVTMLLPMKAVTRHMGSAQHSM 68
C AS+ P CT S + VC+ T +P+ + G++ S
Sbjct: 275 CSGASTSCCQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTCCVPVPSC----GASASSC 330
Query: 69 TASQPRTASAMPITCSPM 86
S RTAS + + C PM
Sbjct: 331 QPSCCRTASCVSLLCRPM 348
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 41 PSQMVCEVTMLLPMKAVTRHMGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRE 95
P++ T ++P+K+ +A S T S T +P T P+ A V RP E
Sbjct: 369 PTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSRPAE 423
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 56 AVTRHMGSAQHSMTASQPRTASAMPITCSPMEAIVQRPRELR 97
AV +H S QHS + ++A P+T P+ +Q ++L+
Sbjct: 136 AVQQHSASQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQ 177
>gi|190610006 zinc finger protein 671 [Homo sapiens]
Length = 534
Score = 26.6 bits (57), Expect = 4.6
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 12 CRSCGSASSESYTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRHMGSAQHSMTAS 71
C CG A S+S L+ W + + R + ++ L+ + V H G
Sbjct: 427 CSECGKAFSQSSHLNVHWRIHSSDYECSRCGKAFSCISKLIQHQKV--HSGE-------- 476
Query: 72 QPRTASAMPITCSPM-EAIVQRPRELRTWK 100
P CS +A QRP +R WK
Sbjct: 477 -------KPYECSKCGKAFTQRPNLIRHWK 499
>gi|32140182 keratin associated protein 10-10 [Homo sapiens]
Length = 251
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 15 CGSASSESYTLHCIWPVLCTTQFIHRPSQM------VCEVTMLLPMKAVTRHMGSAQHSM 68
C AS+ P CT S + VC+ T +P+ + G++ S
Sbjct: 161 CSGASTSCCQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTCCVPVPSC----GASASSC 216
Query: 69 TASQPRTASAMPITCSPM 86
S RTAS + + C P+
Sbjct: 217 QPSCCRTASCVSLLCRPV 234
>gi|154426324 hypothetical protein LOC55049 isoform 1 [Homo sapiens]
Length = 201
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 64 AQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIR 105
A T ++ R A P +P+ +VQR +L+ +A+G R
Sbjct: 16 AAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFR 57
>gi|4826876 osteomodulin [Homo sapiens]
Length = 421
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 23 YTLHCIWPVLCTTQFIHRPSQMVCEVTMLLPMKAVTRHM 61
YTL C+ C T F PS M C+ L + + H+
Sbjct: 58 YTLGCVSECFCPTNF---PSSMYCDNRKLKTIPNIPMHI 93
>gi|154426266 hypothetical protein LOC55049 isoform 2 [Homo sapiens]
Length = 179
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 64 AQHSMTASQPRTASAMPITCSPMEAIVQRPRELRTWKAEGIR 105
A T ++ R A P +P+ +VQR +L+ +A+G R
Sbjct: 16 AAEEATEARGREEPAWPWKDAPIRTLVQRIHQLQAERAQGFR 57
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.127 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,047,158
Number of Sequences: 37866
Number of extensions: 145624
Number of successful extensions: 729
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 19
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.