Guide to the Human Genome
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Name: LOC100133176 Sequence: fasta or formatted (55aa) NCBI GI: 169213164
Description:

PREDICTED: similar to zinc finger protein 195

Not currently referenced in the text

Other entries for this name:
alt mRNA {55aa} PREDICTED: similar to zinc finger protein 195
alt mRNA {55aa} PREDICTED: similar to zinc finger protein 195
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.8          1           1
 C cysteine            3.6          2           1
 D aspartate           0.0          0           0
 E glutamate           9.1          5           1
 F phenylalanine       1.8          1           1
 G glycine             7.3          4           1
 H histidine           3.6          2           1
 I isoleucine          9.1          5           1
 K lysine              3.6          2           1
 L leucine             9.1          5           1
 M methionine          1.8          1           1
 N asparagine          5.5          3           1
 P proline             3.6          2           1
 Q glutamine           5.5          3           1
 R arginine            3.6          2           1
 S serine              9.1          5           1
 T threonine          10.9          6           1
 V valine              7.3          4           2
 W tryptophan          1.8          1           1
 Y tyrosine            1.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 195 [Homo... 
LOC100133176          1.000   PREDICTED: similar to zinc finger protein 195 [Homo...
LOC100133176          1.000   PREDICTED: similar to zinc finger protein 195 [Homo...
ZNF195                0.522   zinc finger protein 195 isoform 3 
LOC729806             0.522   PREDICTED: similar to hCG1725380 
LOC729806             0.522   PREDICTED: similar to hCG1725380 
LOC729806             0.522   PREDICTED: similar to hCG1725380 
ZNF195                0.500   zinc finger protein 195 isoform 2 
ZNF195                0.500   zinc finger protein 195 isoform 1 
ZNF727                0.478   zinc finger protein 727 
LOC100294071          0.478   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF679                0.467   zinc finger protein 679 
LOC728927             0.467   PREDICTED: similar to hCG40110 
LOC728927             0.467   PREDICTED: similar to hCG40110 
LOC728927             0.467   PREDICTED: hypothetical protein LOC728927 
LOC728927             0.467   PREDICTED: similar to hCG40110 
ZNF682                0.467   zinc finger protein 682 isoform 2 
ZNF682                0.467   zinc finger protein 682 isoform 1 
ZNF716                0.411   zinc finger protein 716 
ZNF716                0.411   PREDICTED: zinc finger protein 716 
ZNF716                0.411   PREDICTED: zinc finger protein 716 
ZNF716                0.411   PREDICTED: zinc finger protein 716 
ZNF735                0.411   zinc finger protein 735 
ZNF720                0.400   zinc finger protein 720 
ZNF85                 0.400   zinc finger protein 85 
ZNF716                0.389   PREDICTED: zinc finger protein 716 
ZNF492                0.389   zinc finger protein 492 
ZNF98                 0.389   zinc finger protein 98 
LOC730110             0.378   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.378   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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